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Items: 1 to 20 of 39

1.

MEMHDX: An interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets.

Hourdel V, Volant S, O'Brien DP, Chenal A, Chamot-Rooke J, Dillies MA, Brier S.

Bioinformatics. 2016 Jul 13. pii: btw420. [Epub ahead of print]

2.

GH16 and GH81 family β-(1,3)-glucanases in Aspergillus fumigatus are essential for conidial cell wall morphogenesis.

Mouyna I, Aimanianda V, Hartl L, Prevost MC, Sismeiro O, Dillies MA, Jagla B, Legendre R, Coppee JY, Latgé JP.

Cell Microbiol. 2016 Jun 15. doi: 10.1111/cmi.12630. [Epub ahead of print]

PMID:
27306610
3.

SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data.

Varet H, Brillet-Guéguen L, Coppée JY, Dillies MA.

PLoS One. 2016 Jun 9;11(6):e0157022. doi: 10.1371/journal.pone.0157022. eCollection 2016.

4.

Bacteriocin from epidemic Listeria strains alters the host intestinal microbiota to favor infection.

Quereda JJ, Dussurget O, Nahori MA, Ghozlane A, Volant S, Dillies MA, Regnault B, Kennedy S, Mondot S, Villoing B, Cossart P, Pizarro-Cerda J.

Proc Natl Acad Sci U S A. 2016 May 17;113(20):5706-11. doi: 10.1073/pnas.1523899113. Epub 2016 May 2.

5.

Comparative analysis of viral RNA signatures on different RIG-I-like receptors.

Sanchez David RY, Combredet C, Sismeiro O, Dillies MA, Jagla B, Coppée JY, Mura M, Guerbois Galla M, Despres P, Tangy F, Komarova AV.

Elife. 2016 Mar 24;5. pii: e11275. doi: 10.7554/eLife.11275.

6.

Bacteriophages to reduce gut carriage of antibiotic resistant uropathogens with low impact on microbiota composition.

Galtier M, De Sordi L, Maura D, Arachchi H, Volant S, Dillies MA, Debarbieux L.

Environ Microbiol. 2016 Jul;18(7):2237-45. doi: 10.1111/1462-2920.13284. Epub 2016 Apr 28.

PMID:
26971586
7.

Overexpression of the Heterochromatinization Factor BAHD1 in HEK293 Cells Differentially Reshapes the DNA Methylome on Autosomes and X Chromosome.

Libertini E, Lebreton A, Lakisic G, Dillies MA, Beck S, Coppée JY, Cossart P, Bierne H.

Front Genet. 2015 Dec 1;6:339. doi: 10.3389/fgene.2015.00339. eCollection 2015.

8.

Normal and Cystic Fibrosis Human Bronchial Epithelial Cells Infected with Pseudomonas aeruginosa Exhibit Distinct Gene Activation Patterns.

Balloy V, Varet H, Dillies MA, Proux C, Jagla B, Coppée JY, Tabary O, Corvol H, Chignard M, Guillot L.

PLoS One. 2015 Oct 20;10(10):e0140979. doi: 10.1371/journal.pone.0140979. eCollection 2015.

9.

Adaptation in Toxic Environments: Arsenic Genomic Islands in the Bacterial Genus Thiomonas.

Freel KC, Krueger MC, Farasin J, Brochier-Armanet C, Barbe V, Andrès J, Cholley PE, Dillies MA, Jagla B, Koechler S, Leva Y, Magdelenat G, Plewniak F, Proux C, Coppée JY, Bertin PN, Heipieper HJ, Arsène-Ploetze F.

PLoS One. 2015 Sep 30;10(9):e0139011. doi: 10.1371/journal.pone.0139011. eCollection 2015.

10.

Single nucleotide resolution RNA-seq uncovers new regulatory mechanisms in the opportunistic pathogen Streptococcus agalactiae.

Rosinski-Chupin I, Sauvage E, Sismeiro O, Villain A, Da Cunha V, Caliot ME, Dillies MA, Trieu-Cuot P, Bouloc P, Lartigue MF, Glaser P.

BMC Genomics. 2015 May 30;16:419. doi: 10.1186/s12864-015-1583-4.

11.

Repressor activity of the RpoS/σS-dependent RNA polymerase requires DNA binding.

Lévi-Meyrueis C, Monteil V, Sismeiro O, Dillies MA, Kolb A, Monot M, Dupuy B, Duarte SS, Jagla B, Coppée JY, Beraud M, Norel F.

Nucleic Acids Res. 2015 Feb 18;43(3):1456-68. doi: 10.1093/nar/gku1379. Epub 2015 Jan 10.

12.

Differences in gene transcriptomic pattern of Plasmodium falciparum in children with cerebral malaria and asymptomatic carriers.

Almelli T, Nuel G, Bischoff E, Aubouy A, Elati M, Wang CW, Dillies MA, Coppée JY, Ayissi GN, Basco LK, Rogier C, Ndam NT, Deloron P, Tahar R.

PLoS One. 2014 Dec 5;9(12):e114401. doi: 10.1371/journal.pone.0114401. eCollection 2014.

13.

Expanding the RpoS/σS-network by RNA sequencing and identification of σS-controlled small RNAs in Salmonella.

Lévi-Meyrueis C, Monteil V, Sismeiro O, Dillies MA, Monot M, Jagla B, Coppée JY, Dupuy B, Norel F.

PLoS One. 2014 May 8;9(5):e96918. doi: 10.1371/journal.pone.0096918. eCollection 2014.

14.

A putative regulatory genetic locus modulates virulence in the pathogen Leptospira interrogans.

Eshghi A, Becam J, Lambert A, Sismeiro O, Dillies MA, Jagla B, Wunder EA Jr, Ko AI, Coppee JY, Goarant C, Picardeau M.

Infect Immun. 2014 Jun;82(6):2542-52. doi: 10.1128/IAI.01803-14. Epub 2014 Mar 31.

15.

Identification of the virulence landscape essential for Entamoeba histolytica invasion of the human colon.

Thibeaux R, Weber C, Hon CC, Dillies MA, Avé P, Coppée JY, Labruyère E, Guillén N.

PLoS Pathog. 2013;9(12):e1003824. doi: 10.1371/journal.ppat.1003824. Epub 2013 Dec 19.

16.

Identification and characterization of the genetic changes responsible for the characteristic smooth-to-rough morphotype alterations of clinically persistent Mycobacterium abscessus.

Pawlik A, Garnier G, Orgeur M, Tong P, Lohan A, Le Chevalier F, Sapriel G, Roux AL, Conlon K, Honoré N, Dillies MA, Ma L, Bouchier C, Coppée JY, Gaillard JL, Gordon SV, Loftus B, Brosch R, Herrmann JL.

Mol Microbiol. 2013 Nov;90(3):612-29. doi: 10.1111/mmi.12387. Epub 2013 Sep 17.

17.

Massive activation of archaeal defense genes during viral infection.

Quax TE, Voet M, Sismeiro O, Dillies MA, Jagla B, Coppée JY, Sezonov G, Forterre P, van der Oost J, Lavigne R, Prangishvili D.

J Virol. 2013 Aug;87(15):8419-28. doi: 10.1128/JVI.01020-13. Epub 2013 May 22.

18.

Identification of RNA partners of viral proteins in infected cells.

Komarova AV, Combredet C, Sismeiro O, Dillies MA, Jagla B, Sanchez David RY, Vabret N, Coppée JY, Vidalain PO, Tangy F.

RNA Biol. 2013 Jun;10(6):944-56. doi: 10.4161/rna.24453. Epub 2013 Apr 1.

19.

Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26.

Andres J, Arsène-Ploetze F, Barbe V, Brochier-Armanet C, Cleiss-Arnold J, Coppée JY, Dillies MA, Geist L, Joublin A, Koechler S, Lassalle F, Marchal M, Médigue C, Muller D, Nesme X, Plewniak F, Proux C, Ramírez-Bahena MH, Schenowitz C, Sismeiro O, Vallenet D, Santini JM, Bertin PN.

Genome Biol Evol. 2013;5(5):934-53. doi: 10.1093/gbe/evt061.

20.

Quantification of stochastic noise of splicing and polyadenylation in Entamoeba histolytica.

Hon CC, Weber C, Sismeiro O, Proux C, Koutero M, Deloger M, Das S, Agrahari M, Dillies MA, Jagla B, Coppee JY, Bhattacharya A, Guillen N.

Nucleic Acids Res. 2013 Feb 1;41(3):1936-52. doi: 10.1093/nar/gks1271. Epub 2012 Dec 20.

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