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Profiling and Validation of the Circular RNA Repertoire in Adult Murine Hearts.

Jakobi T, Czaja-Hasse LF, Reinhardt R, Dieterich C.

Genomics Proteomics Bioinformatics. 2016 Apr 27. pii: S1672-0229(16)30033-X. doi: 10.1016/j.gpb.2016.02.003. [Epub ahead of print]


Mondo complexes regulate TFEB via TOR inhibition to promote longevity in response to gonadal signals.

Nakamura S, Karalay Ö, Jäger PS, Horikawa M, Klein C, Nakamura K, Latza C, Templer SE, Dieterich C, Antebi A.

Nat Commun. 2016 Mar 22;7:10944. doi: 10.1038/ncomms10944.


Specific identification and quantification of circular RNAs from sequencing data.

Cheng J, Metge F, Dieterich C.

Bioinformatics. 2015 Nov 9. pii: btv656. [Epub ahead of print]


Ancient gene duplications have shaped developmental stage-specific expression in Pristionchus pacificus.

Baskaran P, Rödelsperger C, Prabh N, Serobyan V, Markov GV, Hirsekorn A, Dieterich C.

BMC Evol Biol. 2015 Sep 15;15:185. doi: 10.1186/s12862-015-0466-2.


Integrin-linked kinase regulates the niche of quiescent epidermal stem cells.

Morgner J, Ghatak S, Jakobi T, Dieterich C, Aumailley M, Wickström SA.

Nat Commun. 2015 Sep 8;6:8198. doi: 10.1038/ncomms9198.


Cross-tissue and cross-species analysis of gene expression in skeletal muscle and electric organ of African weakly-electric fish (Teleostei; Mormyridae).

Lamanna F, Kirschbaum F, Waurick I, Dieterich C, Tiedemann R.

BMC Genomics. 2015 Sep 3;16:668. doi: 10.1186/s12864-015-1858-9.


Transcriptome-wide measurement of ribosomal occupancy by ribosome profiling.

Aeschimann F, Xiong J, Arnold A, Dieterich C, Grosshans H.

Methods. 2015 Sep 1;85:75-89. doi: 10.1016/j.ymeth.2015.06.013. Epub 2015 Jun 20.


Label-Free Protein-RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression.

Boucas J, Fritz C, Schmitt A, Riabinska A, Thelen L, Peifer M, Leeser U, Nuernberg P, Altmueller J, Gaestel M, Dieterich C, Reinhardt HC.

PLoS One. 2015 May 20;10(5):e0125745. doi: 10.1371/journal.pone.0125745. eCollection 2015.


CWC22-dependent pre-mRNA splicing and eIF4A3 binding enables global deposition of exon junction complexes.

Steckelberg AL, Altmueller J, Dieterich C, Gehring NH.

Nucleic Acids Res. 2015 May 19;43(9):4687-700. doi: 10.1093/nar/gkv320. Epub 2015 Apr 13.


A coding-independent function of an alternative Ube3a transcript during neuronal development.

Valluy J, Bicker S, Aksoy-Aksel A, Lackinger M, Sumer S, Fiore R, Wüst T, Seffer D, Metge F, Dieterich C, Wöhr M, Schwarting R, Schratt G.

Nat Neurosci. 2015 May;18(5):666-73. doi: 10.1038/nn.3996. Epub 2015 Apr 13.


A protocol for chemical mutagenesis in Strongyloides ratti.

Guo L, Chang Z, Dieterich C, Streit A.

Exp Parasitol. 2015 Nov;158:2-7. doi: 10.1016/j.exppara.2015.03.001. Epub 2015 Mar 9.


A Grhl2-dependent gene network controls trophoblast branching morphogenesis.

Walentin K, Hinze C, Werth M, Haase N, Varma S, Morell R, Aue A, Pötschke E, Warburton D, Qiu A, Barasch J, Purfürst B, Dieterich C, Popova E, Bader M, Dechend R, Staff AC, Yurtdas ZY, Kilic E, Schmidt-Ott KM.

Development. 2015 Mar 15;142(6):1125-36. doi: 10.1242/dev.113829.


Mitofusin 2 is required to maintain mitochondrial coenzyme Q levels.

Mourier A, Motori E, Brandt T, Lagouge M, Atanassov I, Galinier A, Rappl G, Brodesser S, Hultenby K, Dieterich C, Larsson NG.

J Cell Biol. 2015 Feb 16;208(4):429-42. doi: 10.1083/jcb.201411100.


Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals.

Ivanov A, Memczak S, Wyler E, Torti F, Porath HT, Orejuela MR, Piechotta M, Levanon EY, Landthaler M, Dieterich C, Rajewsky N.

Cell Rep. 2015 Jan 13;10(2):170-7. doi: 10.1016/j.celrep.2014.12.019. Epub 2014 Dec 31.


DoRiNA 2.0--upgrading the doRiNA database of RNA interactions in post-transcriptional regulation.

Blin K, Dieterich C, Wurmus R, Rajewsky N, Landthaler M, Akalin A.

Nucleic Acids Res. 2015 Jan;43(Database issue):D160-7. doi: 10.1093/nar/gku1180. Epub 2014 Nov 21.


Disorder and residual helicity alter p53-Mdm2 binding affinity and signaling in cells.

Borcherds W, Theillet FX, Katzer A, Finzel A, Mishall KM, Powell AT, Wu H, Manieri W, Dieterich C, Selenko P, Loewer A, Daughdrill GW.

Nat Chem Biol. 2014 Dec;10(12):1000-2. doi: 10.1038/nchembio.1668. Epub 2014 Nov 2.


A host beetle pheromone regulates development and behavior in the nematode Pristionchus pacificus.

Cinkornpumin JK, Wisidagama DR, Rapoport V, Go JL, Dieterich C, Wang X, Sommer RJ, Hong RL.

Elife. 2014 Oct 15;3. doi: 10.7554/eLife.03229.


Serum microRNAs in patients with genetic amyotrophic lateral sclerosis and pre-manifest mutation carriers.

Freischmidt A, Müller K, Zondler L, Weydt P, Volk AE, Božič AL, Walter M, Bonin M, Mayer B, von Arnim CA, Otto M, Dieterich C, Holzmann K, Andersen PM, Ludolph AC, Danzer KM, Weishaupt JH.

Brain. 2014 Nov;137(Pt 11):2938-50. doi: 10.1093/brain/awu249. Epub 2014 Sep 5.


The genome of Eimeria falciformis--reduction and specialization in a single host apicomplexan parasite.

Heitlinger E, Spork S, Lucius R, Dieterich C.

BMC Genomics. 2014 Aug 20;15:696. doi: 10.1186/1471-2164-15-696.


Detection of active transcription factor binding sites with the combination of DNase hypersensitivity and histone modifications.

Gusmao EG, Dieterich C, Zenke M, Costa IG.

Bioinformatics. 2014 Nov 15;30(22):3143-51. doi: 10.1093/bioinformatics/btu519. Epub 2014 Aug 1.

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