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Results: 1 to 20 of 56

1.

Bidirectional genomic exchange between Helicobacter pylori strains from a family in Coventry, United Kingdom.

Krebes J, Didelot X, Kennemann L, Suerbaum S.

Int J Med Microbiol. 2014 Aug 17. pii: S1438-4221(14)00106-4. doi: 10.1016/j.ijmm.2014.08.007. [Epub ahead of print]

PMID:
25218701
[PubMed - as supplied by publisher]
2.

Progressive genomic convergence of two Helicobacter pylori strains during mixed infection of a patient with chronic gastritis.

Cao Q, Didelot X, Wu Z, Li Z, He L, Li Y, Ni M, You Y, Lin X, Li Z, Gong Y, Zheng M, Zhang M, Liu J, Wang W, Bo X, Falush D, Wang S, Zhang J.

Gut. 2014 Jul 9. pii: gutjnl-2014-307345. doi: 10.1136/gutjnl-2014-307345. [Epub ahead of print]

PMID:
25007814
[PubMed - as supplied by publisher]
Free Article
3.

OutbreakTools: a new platform for disease outbreak analysis using the R software.

Jombart T, Aanensen DM, Baguelin M, Birrell P, Cauchemez S, Camacho A, Colijn C, Collins C, Cori A, Didelot X, Fraser C, Frost S, Hens N, Hugues J, Höhle M, Opatowski L, Rambaut A, Ratmann O, Soubeyrand S, Suchard MA, Wallinga J, Ypma R, Ferguson N.

Epidemics. 2014 Jun;7:28-34. doi: 10.1016/j.epidem.2014.04.003. Epub 2014 Apr 18.

PMID:
24928667
[PubMed - in process]
Free PMC Article
4.

Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus.

Everitt RG, Didelot X, Batty EM, Miller RR, Knox K, Young BC, Bowden R, Auton A, Votintseva A, Larner-Svensson H, Charlesworth J, Golubchik T, Ip CL, Godwin H, Fung R, Peto TE, Walker AS, Crook DW, Wilson DJ.

Nat Commun. 2014 May 23;5:3956. doi: 10.1038/ncomms4956.

PMID:
24853639
[PubMed - in process]
Free PMC Article
5.

A Bayesian Approach to Inferring the Phylogenetic Structure of Communities from Metagenomic Data.

O'Brien JD, Didelot X, Iqbal Z, Amenga-Etego L, Ahiska B, Falush D.

Genetics. 2014 May 1;197(3):925-937. [Epub ahead of print]

PMID:
24793089
[PubMed - as supplied by publisher]
Free PMC Article
6.

Bayesian inference of infectious disease transmission from whole-genome sequence data.

Didelot X, Gardy J, Colijn C.

Mol Biol Evol. 2014 Jul;31(7):1869-79. doi: 10.1093/molbev/msu121. Epub 2014 Apr 8.

PMID:
24714079
[PubMed - in process]
Free PMC Article
7.

Efficient inference of recombination hot regions in bacterial genomes.

Yahara K, Didelot X, Ansari MA, Sheppard SK, Falush D.

Mol Biol Evol. 2014 Jun;31(6):1593-605. doi: 10.1093/molbev/msu082. Epub 2014 Feb 27.

PMID:
24586045
[PubMed - in process]
Free PMC Article
8.

Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data.

Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C, Ferguson N.

PLoS Comput Biol. 2014 Jan;10(1):e1003457. doi: 10.1371/journal.pcbi.1003457. Epub 2014 Jan 23.

PMID:
24465202
[PubMed - in process]
Free PMC Article
9.

Healthcare-associated outbreak of meticillin-resistant Staphylococcus aureus bacteraemia: role of a cryptic variant of an epidemic clone.

Miller RM, Price JR, Batty EM, Didelot X, Wyllie D, Golubchik T, Crook DW, Paul J, Peto TE, Wilson DJ, Cule M, Ip CL, Day NP, Moore CE, Bowden R, Llewelyn MJ.

J Hosp Infect. 2014 Feb;86(2):83-9. doi: 10.1016/j.jhin.2013.11.007. Epub 2013 Dec 21.

PMID:
24433924
[PubMed - in process]
Free PMC Article
10.

Recombination shapes genome architecture in an organism from the archaeal domain.

Krause DJ, Didelot X, Cadillo-Quiroz H, Whitaker RJ.

Genome Biol Evol. 2014 Jan;6(1):170-8. doi: 10.1093/gbe/evu003.

PMID:
24391154
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Evolutionary history of the Clostridium difficile pathogenicity locus.

Dingle KE, Elliott B, Robinson E, Griffiths D, Eyre DW, Stoesser N, Vaughan A, Golubchik T, Fawley WN, Wilcox MH, Peto TE, Walker AS, Riley TV, Crook DW, Didelot X.

Genome Biol Evol. 2014 Jan;6(1):36-52. doi: 10.1093/gbe/evt204.

PMID:
24336451
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The ubiquitous nature of Listeria monocytogenes clones: a large-scale Multilocus Sequence Typing study.

Haase JK, Didelot X, Lecuit M, Korkeala H; L. monocytogenes MLST Study Group, Achtman M.

Environ Microbiol. 2014 Feb;16(2):405-16. doi: 10.1111/1462-2920.12342. Epub 2013 Dec 16.

PMID:
24274459
[PubMed - indexed for MEDLINE]
13.

Inference of the properties of the recombination process from whole bacterial genomes.

Ansari MA, Didelot X.

Genetics. 2014 Jan;196(1):253-65. doi: 10.1534/genetics.113.157172. Epub 2013 Oct 30.

PMID:
24172133
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Diverse sources of C. difficile infection identified on whole-genome sequencing.

Eyre DW, Cule ML, Wilson DJ, Griffiths D, Vaughan A, O'Connor L, Ip CL, Golubchik T, Batty EM, Finney JM, Wyllie DH, Didelot X, Piazza P, Bowden R, Dingle KE, Harding RM, Crook DW, Wilcox MH, Peto TE, Walker AS.

N Engl J Med. 2013 Sep 26;369(13):1195-205. doi: 10.1056/NEJMoa1216064.

PMID:
24066741
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Genomic evolution and transmission of Helicobacter pylori in two South African families.

Didelot X, Nell S, Yang I, Woltemate S, van der Merwe S, Suerbaum S.

Proc Natl Acad Sci U S A. 2013 Aug 20;110(34):13880-5. doi: 10.1073/pnas.1304681110. Epub 2013 Jul 29.

PMID:
23898187
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Role of energy sensor TlpD of Helicobacter pylori in gerbil colonization and genome analyses after adaptation in the gerbil.

Behrens W, Schweinitzer T, Bal J, Dorsch M, Bleich A, Kops F, Brenneke B, Didelot X, Suerbaum S, Josenhans C.

Infect Immun. 2013 Oct;81(10):3534-51. doi: 10.1128/IAI.00750-13. Epub 2013 Jul 8.

PMID:
23836820
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter.

Sheppard SK, Didelot X, Meric G, Torralbo A, Jolley KA, Kelly DJ, Bentley SD, Maiden MC, Parkhill J, Falush D.

Proc Natl Acad Sci U S A. 2013 Jul 16;110(29):11923-7. doi: 10.1073/pnas.1305559110. Epub 2013 Jul 1.

PMID:
23818615
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Within-host evolution of Staphylococcus aureus during asymptomatic carriage.

Golubchik T, Batty EM, Miller RR, Farr H, Young BC, Larner-Svensson H, Fung R, Godwin H, Knox K, Votintseva A, Everitt RG, Street T, Cule M, Ip CL, Didelot X, Peto TE, Harding RM, Wilson DJ, Crook DW, Bowden R.

PLoS One. 2013 May 1;8(5):e61319. doi: 10.1371/journal.pone.0061319. Print 2013.

PMID:
23658690
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genomic analysis to improve the management of outbreaks of bacterial infection.

Didelot X.

Expert Rev Anti Infect Ther. 2013 Apr;11(4):335-7. doi: 10.1586/eri.13.15. No abstract available.

PMID:
23566141
[PubMed - indexed for MEDLINE]
20.

Comparative analysis of Chlamydia psittaci genomes reveals the recent emergence of a pathogenic lineage with a broad host range.

Read TD, Joseph SJ, Didelot X, Liang B, Patel L, Dean D.

MBio. 2013 Mar 26;4(2). pii: e00604-12. doi: 10.1128/mBio.00604-12.

PMID:
23532978
[PubMed - indexed for MEDLINE]
Free PMC Article

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