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Results: 1 to 20 of 62

1.

Epidemic clones, oceanic gene pools and eco-LD in the free living marine pathogen Vibrio parahaemolyticus.

Cui Y, Yang X, Didelot X, Guo C, Li D, Yan Y, Zhang Y, Yuan Y, Yang H, Wang J, Wang J, Song Y, Zhou D, Falush D, Yang R.

Mol Biol Evol. 2015 Jan 19. pii: msv009. [Epub ahead of print]

PMID:
25605790
[PubMed - as supplied by publisher]
Free Article
2.

Klebsiella pneumoniae carbapenemase (KPC) producing K. pneumoniae at a Single Institution: Insights into Endemicity from Whole Genome Sequencing.

Mathers AJ, Stoesser N, Sheppard AE, Pankhurst L, Giess A, Yeh AJ, Didelot X, Turner SD, Sebra R, Kasarskis A, Peto T, Crook D, Sifri CD.

Antimicrob Agents Chemother. 2015 Jan 5. pii: AAC.04292-14. [Epub ahead of print]

PMID:
25561339
[PubMed - as supplied by publisher]
3.

The application of genomics to tracing bacterial pathogen transmission.

Croucher NJ, Didelot X.

Curr Opin Microbiol. 2014 Nov 22;23C:62-67. doi: 10.1016/j.mib.2014.11.004. [Epub ahead of print] Review.

PMID:
25461574
[PubMed - as supplied by publisher]
4.

The Complexity and Diversity of the Pathogenicity Locus in Clostridium difficile Clade 5.

Elliott B, Dingle KE, Didelot X, Crook DW, Riley TV.

Genome Biol Evol. 2014 Nov 8;6(12):3159-70. doi: 10.1093/gbe/evu248.

PMID:
25381663
[PubMed - in process]
Free Article
5.

Genome sequencing of an extended series of NDM-producing Klebsiella pneumoniae isolates from neonatal infections in a Nepali hospital characterizes the extent of community- versus hospital-associated transmission in an endemic setting.

Stoesser N, Giess A, Batty EM, Sheppard AE, Walker AS, Wilson DJ, Didelot X, Bashir A, Sebra R, Kasarskis A, Sthapit B, Shakya M, Kelly D, Pollard AJ, Peto TE, Crook DW, Donnelly P, Thorson S, Amatya P, Joshi S.

Antimicrob Agents Chemother. 2014 Dec;58(12):7347-57. doi: 10.1128/AAC.03900-14. Epub 2014 Sep 29.

PMID:
25267672
[PubMed - in process]
Free PMC Article
6.

Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles.

Nandi T, Holden MT, Didelot X, Mehershahi K, Boddey JA, Beacham I, Peak I, Harting J, Baybayan P, Guo Y, Wang S, How LC, Sim B, Essex-Lopresti A, Sarkar-Tyson M, Nelson M, Smither S, Ong C, Aw LT, Hoon CH, Michell S, Studholme DJ, Titball R, Chen SL, Parkhill J, Tan P.

Genome Res. 2015 Jan;25(1):129-41. doi: 10.1101/gr.177543.114. Epub 2014 Sep 18.

PMID:
25236617
[PubMed - in process]
7.

Bidirectional genomic exchange between Helicobacter pylori strains from a family in Coventry, United Kingdom.

Krebes J, Didelot X, Kennemann L, Suerbaum S.

Int J Med Microbiol. 2014 Nov;304(8):1135-46. doi: 10.1016/j.ijmm.2014.08.007. Epub 2014 Aug 17.

PMID:
25218701
[PubMed - in process]
8.

Progressive genomic convergence of two Helicobacter pylori strains during mixed infection of a patient with chronic gastritis.

Cao Q, Didelot X, Wu Z, Li Z, He L, Li Y, Ni M, You Y, Lin X, Li Z, Gong Y, Zheng M, Zhang M, Liu J, Wang W, Bo X, Falush D, Wang S, Zhang J.

Gut. 2014 Jul 9. pii: gutjnl-2014-307345. doi: 10.1136/gutjnl-2014-307345. [Epub ahead of print]

PMID:
25007814
[PubMed - as supplied by publisher]
Free Article
9.

OutbreakTools: a new platform for disease outbreak analysis using the R software.

Jombart T, Aanensen DM, Baguelin M, Birrell P, Cauchemez S, Camacho A, Colijn C, Collins C, Cori A, Didelot X, Fraser C, Frost S, Hens N, Hugues J, Höhle M, Opatowski L, Rambaut A, Ratmann O, Soubeyrand S, Suchard MA, Wallinga J, Ypma R, Ferguson N.

Epidemics. 2014 Jun;7:28-34. doi: 10.1016/j.epidem.2014.04.003. Epub 2014 Apr 18.

PMID:
24928667
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Mobile elements drive recombination hotspots in the core genome of Staphylococcus aureus.

Everitt RG, Didelot X, Batty EM, Miller RR, Knox K, Young BC, Bowden R, Auton A, Votintseva A, Larner-Svensson H, Charlesworth J, Golubchik T, Ip CL, Godwin H, Fung R, Peto TE, Walker AS, Crook DW, Wilson DJ.

Nat Commun. 2014 May 23;5:3956. doi: 10.1038/ncomms4956.

PMID:
24853639
[PubMed - in process]
Free PMC Article
11.

A Bayesian approach to inferring the phylogenetic structure of communities from metagenomic data.

O'Brien JD, Didelot X, Iqbal Z, Amenga-Etego L, Ahiska B, Falush D.

Genetics. 2014 Jul;197(3):925-37. doi: 10.1534/genetics.114.161299. Epub 2014 May 1.

PMID:
24793089
[PubMed - in process]
Free PMC Article
12.

Bayesian inference of infectious disease transmission from whole-genome sequence data.

Didelot X, Gardy J, Colijn C.

Mol Biol Evol. 2014 Jul;31(7):1869-79. doi: 10.1093/molbev/msu121. Epub 2014 Apr 8.

PMID:
24714079
[PubMed - in process]
Free PMC Article
13.

Efficient inference of recombination hot regions in bacterial genomes.

Yahara K, Didelot X, Ansari MA, Sheppard SK, Falush D.

Mol Biol Evol. 2014 Jun;31(6):1593-605. doi: 10.1093/molbev/msu082. Epub 2014 Feb 27.

PMID:
24586045
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Bayesian reconstruction of disease outbreaks by combining epidemiologic and genomic data.

Jombart T, Cori A, Didelot X, Cauchemez S, Fraser C, Ferguson N.

PLoS Comput Biol. 2014 Jan;10(1):e1003457. doi: 10.1371/journal.pcbi.1003457. Epub 2014 Jan 23.

PMID:
24465202
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Healthcare-associated outbreak of meticillin-resistant Staphylococcus aureus bacteraemia: role of a cryptic variant of an epidemic clone.

Miller RM, Price JR, Batty EM, Didelot X, Wyllie D, Golubchik T, Crook DW, Paul J, Peto TE, Wilson DJ, Cule M, Ip CL, Day NP, Moore CE, Bowden R, Llewelyn MJ.

J Hosp Infect. 2014 Feb;86(2):83-9. doi: 10.1016/j.jhin.2013.11.007. Epub 2013 Dec 21.

PMID:
24433924
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Recombination shapes genome architecture in an organism from the archaeal domain.

Krause DJ, Didelot X, Cadillo-Quiroz H, Whitaker RJ.

Genome Biol Evol. 2014 Jan;6(1):170-8. doi: 10.1093/gbe/evu003.

PMID:
24391154
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Evolutionary history of the Clostridium difficile pathogenicity locus.

Dingle KE, Elliott B, Robinson E, Griffiths D, Eyre DW, Stoesser N, Vaughan A, Golubchik T, Fawley WN, Wilcox MH, Peto TE, Walker AS, Riley TV, Crook DW, Didelot X.

Genome Biol Evol. 2014 Jan;6(1):36-52. doi: 10.1093/gbe/evt204.

PMID:
24336451
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The ubiquitous nature of Listeria monocytogenes clones: a large-scale Multilocus Sequence Typing study.

Haase JK, Didelot X, Lecuit M, Korkeala H; L. monocytogenes MLST Study Group, Achtman M.

Environ Microbiol. 2014 Feb;16(2):405-16. doi: 10.1111/1462-2920.12342. Epub 2013 Dec 16.

PMID:
24274459
[PubMed - indexed for MEDLINE]
19.

Inference of the properties of the recombination process from whole bacterial genomes.

Ansari MA, Didelot X.

Genetics. 2014 Jan;196(1):253-65. doi: 10.1534/genetics.113.157172. Epub 2013 Oct 30.

PMID:
24172133
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Diverse sources of C. difficile infection identified on whole-genome sequencing.

Eyre DW, Cule ML, Wilson DJ, Griffiths D, Vaughan A, O'Connor L, Ip CL, Golubchik T, Batty EM, Finney JM, Wyllie DH, Didelot X, Piazza P, Bowden R, Dingle KE, Harding RM, Crook DW, Wilcox MH, Peto TE, Walker AS.

N Engl J Med. 2013 Sep 26;369(13):1195-205. doi: 10.1056/NEJMoa1216064.

PMID:
24066741
[PubMed - indexed for MEDLINE]
Free PMC Article

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