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Results: 1 to 20 of 35

1.

Novel genetic susceptibility loci for diabetic end-stage renal disease identified through robust naive Bayes classification.

Sambo F, Malovini A, Sandholm N, Stavarachi M, Forsblom C, Mäkinen VP, Harjutsalo V, Lithovius R, Gordin D, Parkkonen M, Saraheimo M, Thorn LM, Tolonen N, Wadén J, He B, Osterholm AM, Tuomilehto J, Lajer M, Salem RM, McKnight AJ; GENIE Consortium, Tarnow L, Panduru NM, Barbarini N, Di Camillo B, Toffolo GM, Tryggvason K, Bellazzi R, Cobelli C; FinnDiane Study Group, Groop PH.

Diabetologia. 2014 Aug;57(8):1611-22. doi: 10.1007/s00125-014-3256-2. Epub 2014 May 29.

PMID:
24871321
[PubMed - in process]
2.

Leucine modulates dynamic phosphorylation events in insulin signaling pathway and enhances insulin-dependent glycogen synthesis in human skeletal muscle cells.

Di Camillo B, Eduati F, Nair SK, Avogaro A, Toffolo GM.

BMC Cell Biol. 2014 Mar 20;15:9. doi: 10.1186/1471-2121-15-9.

PMID:
24646332
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Reducing bias in RNA sequencing data: a novel approach to compute counts.

Finotello F, Lavezzo E, Bianco L, Barzon L, Mazzon P, Fontana P, Toppo S, Di Camillo B.

BMC Bioinformatics. 2014;15 Suppl 1:S7. doi: 10.1186/1471-2105-15-S1-S7. Epub 2014 Jan 10.

PMID:
24564404
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

ABACUS: an entropy-based cumulative bivariate statistic robust to rare variants and different direction of genotype effect.

Di Camillo B, Sambo F, Toffolo G, Cobelli C.

Bioinformatics. 2014 Feb 1;30(3):384-91. doi: 10.1093/bioinformatics/btt697. Epub 2013 Nov 28.

PMID:
24292361
[PubMed - indexed for MEDLINE]
5.

Genomic comparative analysis and gene function prediction in infectious diseases: application to the investigation of a meningitis outbreak.

Lavezzo E, Toppo S, Franchin E, Di Camillo B, Finotello F, Falda M, Manganelli R, Palù G, Barzon L.

BMC Infect Dis. 2013 Nov 19;13:554. doi: 10.1186/1471-2334-13-554.

PMID:
24252229
[PubMed - in process]
Free Article
6.

Accurate human papillomavirus genotyping by 454 pyrosequencing.

Militello V, Lavezzo E, Costanzi G, Franchin E, Di Camillo B, Toppo S, Palù G, Barzon L.

Clin Microbiol Infect. 2013 Oct;19(10):E428-34. doi: 10.1111/1469-0691.12219. Epub 2013 Apr 10.

PMID:
23573945
[PubMed - indexed for MEDLINE]
7.

Microarray demonstrates different gene expression profiling signatures between Waldenström macroglobulinemia and IgM monoclonal gammopathy of undetermined significance.

Trojani A, Greco A, Tedeschi A, Lodola M, Di Camillo B, Ricci F, Turrini M, Varettoni M, Rattotti S, Morra E.

Clin Lymphoma Myeloma Leuk. 2013 Apr;13(2):208-10. doi: 10.1016/j.clml.2013.02.012. Epub 2013 Mar 9.

PMID:
23477935
[PubMed - indexed for MEDLINE]
8.

A large-scale evaluation of computational protein function prediction.

Radivojac P, Clark WT, Oron TR, Schnoes AM, Wittkop T, Sokolov A, Graim K, Funk C, Verspoor K, Ben-Hur A, Pandey G, Yunes JM, Talwalkar AS, Repo S, Souza ML, Piovesan D, Casadio R, Wang Z, Cheng J, Fang H, Gough J, Koskinen P, Törönen P, Nokso-Koivisto J, Holm L, Cozzetto D, Buchan DW, Bryson K, Jones DT, Limaye B, Inamdar H, Datta A, Manjari SK, Joshi R, Chitale M, Kihara D, Lisewski AM, Erdin S, Venner E, Lichtarge O, Rentzsch R, Yang H, Romero AE, Bhat P, Paccanaro A, Hamp T, Kaßner R, Seemayer S, Vicedo E, Schaefer C, Achten D, Auer F, Boehm A, Braun T, Hecht M, Heron M, Hönigschmid P, Hopf TA, Kaufmann S, Kiening M, Krompass D, Landerer C, Mahlich Y, Roos M, Björne J, Salakoski T, Wong A, Shatkay H, Gatzmann F, Sommer I, Wass MN, Sternberg MJ, Škunca N, Supek F, Bošnjak M, Panov P, Džeroski S, Šmuc T, Kourmpetis YA, van Dijk AD, ter Braak CJ, Zhou Y, Gong Q, Dong X, Tian W, Falda M, Fontana P, Lavezzo E, Di Camillo B, Toppo S, Lan L, Djuric N, Guo Y, Vucetic S, Bairoch A, Linial M, Babbitt PC, Brenner SE, Orengo C, Rost B, Mooney SD, Friedberg I.

Nat Methods. 2013 Mar;10(3):221-7. doi: 10.1038/nmeth.2340. Epub 2013 Jan 27.

PMID:
23353650
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Bag of Naïve Bayes: biomarker selection and classification from genome-wide SNP data.

Sambo F, Trifoglio E, Di Camillo B, Toffolo GM, Cobelli C.

BMC Bioinformatics. 2012;13 Suppl 14:S2. doi: 10.1186/1471-2105-13-S14-S2. Epub 2012 Sep 7.

PMID:
23095127
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

MORE: mixed optimization for reverse engineering--an application to modeling biological networks response via sparse systems of nonlinear differential equations.

Sambo F, de Oca MA, Di Camillo B, Toffolo G, Stützle T.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Sep-Oct;9(5):1459-71. doi: 10.1109/TCBB.2012.56.

PMID:
22837424
[PubMed - indexed for MEDLINE]
11.

Integrating literature-constrained and data-driven inference of signalling networks.

Eduati F, De Las Rivas J, Di Camillo B, Toffolo G, Saez-Rodriguez J.

Bioinformatics. 2012 Sep 15;28(18):2311-7. doi: 10.1093/bioinformatics/bts363. Epub 2012 Jun 25.

PMID:
22734019
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Confined 3D microenvironment regulates early differentiation in human pluripotent stem cells.

Giobbe GG, Zagallo M, Riello M, Serena E, Masi G, Barzon L, Di Camillo B, Elvassore N.

Biotechnol Bioeng. 2012 Dec;109(12):3119-32. doi: 10.1002/bit.24571. Epub 2012 Jun 20.

PMID:
22674472
[PubMed - indexed for MEDLINE]
13.

Qualitative reasoning for biological network inference from systematic perturbation experiments.

Badaloni S, Di Camillo B, Sambo F.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Sep-Oct;9(5):1482-91.

PMID:
22585141
[PubMed - indexed for MEDLINE]
14.

Improving biomarker list stability by integration of biological knowledge in the learning process.

Sanavia T, Aiolli F, Da San Martino G, Bisognin A, Di Camillo B.

BMC Bioinformatics. 2012 Mar 28;13 Suppl 4:S22. doi: 10.1186/1471-2105-13-S4-S22.

PMID:
22536969
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms.

Falda M, Toppo S, Pescarolo A, Lavezzo E, Di Camillo B, Facchinetti A, Cilia E, Velasco R, Fontana P.

BMC Bioinformatics. 2012 Mar 28;13 Suppl 4:S14. doi: 10.1186/1471-2105-13-S4-S14.

PMID:
22536960
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Effect of size and heterogeneity of samples on biomarker discovery: synthetic and real data assessment.

Di Camillo B, Sanavia T, Martini M, Jurman G, Sambo F, Barla A, Squillario M, Furlanello C, Toffolo G, Cobelli C.

PLoS One. 2012;7(3):e32200. doi: 10.1371/journal.pone.0032200. Epub 2012 Mar 5.

PMID:
22403633
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Function-based discovery of significant transcriptional temporal patterns in insulin stimulated muscle cells.

Di Camillo B, Irving BA, Schimke J, Sanavia T, Toffolo G, Cobelli C, Nair KS.

PLoS One. 2012;7(3):e32391. doi: 10.1371/journal.pone.0032391. Epub 2012 Mar 1.

PMID:
22396763
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Quantitative modeling of the terminal differentiation of B cells and mechanisms of lymphomagenesis.

Martínez MR, Corradin A, Klein U, Álvarez MJ, Toffolo GM, di Camillo B, Califano A, Stolovitzky GA.

Proc Natl Acad Sci U S A. 2012 Feb 14;109(7):2672-7. doi: 10.1073/pnas.1113019109. Epub 2012 Jan 30.

PMID:
22308355
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Dynamic modeling of miRNA-mediated feed-forward loops.

Eduati F, Di Camillo B, Karbiener M, Scheideler M, Corà D, Caselle M, Toffolo G.

J Comput Biol. 2012 Feb;19(2):188-99. doi: 10.1089/cmb.2011.0274.

PMID:
22300320
[PubMed - indexed for MEDLINE]
20.

Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data.

Finotello F, Lavezzo E, Fontana P, Peruzzo D, Albiero A, Barzon L, Falda M, Di Camillo B, Toppo S.

Brief Bioinform. 2012 May;13(3):269-80. doi: 10.1093/bib/bbr063. Epub 2011 Oct 21. Review.

PMID:
22021898
[PubMed - indexed for MEDLINE]
Free Article

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