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Results: 1 to 20 of 42

1.

Toxicogenomic markers for corticosteroid treatment in beef cattle: integrated analysis of transcriptomic data.

Pegolo S, Di Camillo B, Montesissa C, Cannizzo FT, Biolatti B, Bargelloni L.

Food Chem Toxicol. 2014 Dec 19. pii: S0278-6915(14)00500-6. doi: 10.1016/j.fct.2014.12.001. [Epub ahead of print]

PMID:
25533795
[PubMed - as supplied by publisher]
2.

Early origins of adult disease: Low birth weight and vascular remodeling.

Visentin S, Grumolato F, Nardelli GB, Di Camillo B, Grisan E, Cosmi E.

Atherosclerosis. 2014 Dec;237(2):391-399. doi: 10.1016/j.atherosclerosis.2014.09.027. Epub 2014 Sep 30. Review.

PMID:
25463063
[PubMed - as supplied by publisher]
3.

Changes in microRNA expression during disease progression in patients with chronic viral hepatitis.

Sinigaglia A, Lavezzo E, Trevisan M, Sanavia T, Di Camillo B, Peta E, Scarpa M, Castagliuolo I, Guido M, Sarcognato S, Cappellesso R, Fassina A, Cardin R, Farinati F, Palù G, Barzon L.

Liver Int. 2014 Nov 24. doi: 10.1111/liv.12737. [Epub ahead of print]

PMID:
25417901
[PubMed - as supplied by publisher]
4.

Measuring differential gene expression with RNA-seq: challenges and strategies for data analysis.

Finotello F, Di Camillo B.

Brief Funct Genomics. 2014 Sep 18. pii: elu035. [Epub ahead of print] Review.

PMID:
25240000
[PubMed - as supplied by publisher]
5.

3DSpectra: A 3-dimensional quantification algorithm for LC-MS labeled profile data.

Nasso S, Hartler J, Trajanoski Z, Di Camillo B, Mechtler K, Toffolo GM.

J Proteomics. 2014 Sep 16;112C:156-165. doi: 10.1016/j.jprot.2014.08.017. [Epub ahead of print]

PMID:
25218586
[PubMed - as supplied by publisher]
6.

Global genomic and transcriptomic analysis of human pancreatic islets reveals novel genes influencing glucose metabolism.

Fadista J, Vikman P, Laakso EO, Mollet IG, Esguerra JL, Taneera J, Storm P, Osmark P, Ladenvall C, Prasad RB, Hansson KB, Finotello F, Uvebrant K, Ofori JK, Di Camillo B, Krus U, Cilio CM, Hansson O, Eliasson L, Rosengren AH, Renström E, Wollheim CB, Groop L.

Proc Natl Acad Sci U S A. 2014 Sep 23;111(38):13924-9. doi: 10.1073/pnas.1402665111. Epub 2014 Sep 8.

PMID:
25201977
[PubMed - in process]
7.

Compression and fast retrieval of SNP data.

Sambo F, Di Camillo B, Toffolo G, Cobelli C.

Bioinformatics. 2014 Nov 1;30(21):3078-85. doi: 10.1093/bioinformatics/btu495. Epub 2014 Jul 26.

PMID:
25064564
[PubMed - in process]
8.

Novel genetic susceptibility loci for diabetic end-stage renal disease identified through robust naive Bayes classification.

Sambo F, Malovini A, Sandholm N, Stavarachi M, Forsblom C, Mäkinen VP, Harjutsalo V, Lithovius R, Gordin D, Parkkonen M, Saraheimo M, Thorn LM, Tolonen N, Wadén J, He B, Osterholm AM, Tuomilehto J, Lajer M, Salem RM, McKnight AJ; GENIE Consortium, Tarnow L, Panduru NM, Barbarini N, Di Camillo B, Toffolo GM, Tryggvason K, Bellazzi R, Cobelli C; FinnDiane Study Group, Groop PH.

Diabetologia. 2014 Aug;57(8):1611-22. doi: 10.1007/s00125-014-3256-2. Epub 2014 May 29.

PMID:
24871321
[PubMed - in process]
9.

Leucine modulates dynamic phosphorylation events in insulin signaling pathway and enhances insulin-dependent glycogen synthesis in human skeletal muscle cells.

Di Camillo B, Eduati F, Nair SK, Avogaro A, Toffolo GM.

BMC Cell Biol. 2014 Mar 20;15:9. doi: 10.1186/1471-2121-15-9.

PMID:
24646332
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Reducing bias in RNA sequencing data: a novel approach to compute counts.

Finotello F, Lavezzo E, Bianco L, Barzon L, Mazzon P, Fontana P, Toppo S, Di Camillo B.

BMC Bioinformatics. 2014;15 Suppl 1:S7. doi: 10.1186/1471-2105-15-S1-S7. Epub 2014 Jan 10.

PMID:
24564404
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

ABACUS: an entropy-based cumulative bivariate statistic robust to rare variants and different direction of genotype effect.

Di Camillo B, Sambo F, Toffolo G, Cobelli C.

Bioinformatics. 2014 Feb 1;30(3):384-91. doi: 10.1093/bioinformatics/btt697. Epub 2013 Nov 28.

PMID:
24292361
[PubMed - indexed for MEDLINE]
12.

Genomic comparative analysis and gene function prediction in infectious diseases: application to the investigation of a meningitis outbreak.

Lavezzo E, Toppo S, Franchin E, Di Camillo B, Finotello F, Falda M, Manganelli R, Palù G, Barzon L.

BMC Infect Dis. 2013 Nov 19;13:554. doi: 10.1186/1471-2334-13-554.

PMID:
24252229
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Accurate human papillomavirus genotyping by 454 pyrosequencing.

Militello V, Lavezzo E, Costanzi G, Franchin E, Di Camillo B, Toppo S, Palù G, Barzon L.

Clin Microbiol Infect. 2013 Oct;19(10):E428-34. doi: 10.1111/1469-0691.12219. Epub 2013 Apr 10.

PMID:
23573945
[PubMed - indexed for MEDLINE]
14.

Microarray demonstrates different gene expression profiling signatures between Waldenström macroglobulinemia and IgM monoclonal gammopathy of undetermined significance.

Trojani A, Greco A, Tedeschi A, Lodola M, Di Camillo B, Ricci F, Turrini M, Varettoni M, Rattotti S, Morra E.

Clin Lymphoma Myeloma Leuk. 2013 Apr;13(2):208-10. doi: 10.1016/j.clml.2013.02.012. Epub 2013 Mar 9.

PMID:
23477935
[PubMed - indexed for MEDLINE]
15.

A large-scale evaluation of computational protein function prediction.

Radivojac P, Clark WT, Oron TR, Schnoes AM, Wittkop T, Sokolov A, Graim K, Funk C, Verspoor K, Ben-Hur A, Pandey G, Yunes JM, Talwalkar AS, Repo S, Souza ML, Piovesan D, Casadio R, Wang Z, Cheng J, Fang H, Gough J, Koskinen P, Törönen P, Nokso-Koivisto J, Holm L, Cozzetto D, Buchan DW, Bryson K, Jones DT, Limaye B, Inamdar H, Datta A, Manjari SK, Joshi R, Chitale M, Kihara D, Lisewski AM, Erdin S, Venner E, Lichtarge O, Rentzsch R, Yang H, Romero AE, Bhat P, Paccanaro A, Hamp T, Kaßner R, Seemayer S, Vicedo E, Schaefer C, Achten D, Auer F, Boehm A, Braun T, Hecht M, Heron M, Hönigschmid P, Hopf TA, Kaufmann S, Kiening M, Krompass D, Landerer C, Mahlich Y, Roos M, Björne J, Salakoski T, Wong A, Shatkay H, Gatzmann F, Sommer I, Wass MN, Sternberg MJ, Škunca N, Supek F, Bošnjak M, Panov P, Džeroski S, Šmuc T, Kourmpetis YA, van Dijk AD, ter Braak CJ, Zhou Y, Gong Q, Dong X, Tian W, Falda M, Fontana P, Lavezzo E, Di Camillo B, Toppo S, Lan L, Djuric N, Guo Y, Vucetic S, Bairoch A, Linial M, Babbitt PC, Brenner SE, Orengo C, Rost B, Mooney SD, Friedberg I.

Nat Methods. 2013 Mar;10(3):221-7. doi: 10.1038/nmeth.2340. Epub 2013 Jan 27.

PMID:
23353650
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Bag of Naïve Bayes: biomarker selection and classification from genome-wide SNP data.

Sambo F, Trifoglio E, Di Camillo B, Toffolo GM, Cobelli C.

BMC Bioinformatics. 2012;13 Suppl 14:S2. doi: 10.1186/1471-2105-13-S14-S2. Epub 2012 Sep 7.

PMID:
23095127
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

MORE: mixed optimization for reverse engineering--an application to modeling biological networks response via sparse systems of nonlinear differential equations.

Sambo F, de Oca MA, Di Camillo B, Toffolo G, Stützle T.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Sep-Oct;9(5):1459-71. doi: 10.1109/TCBB.2012.56.

PMID:
22837424
[PubMed - indexed for MEDLINE]
18.

Integrating literature-constrained and data-driven inference of signalling networks.

Eduati F, De Las Rivas J, Di Camillo B, Toffolo G, Saez-Rodriguez J.

Bioinformatics. 2012 Sep 15;28(18):2311-7. doi: 10.1093/bioinformatics/bts363. Epub 2012 Jun 25.

PMID:
22734019
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Confined 3D microenvironment regulates early differentiation in human pluripotent stem cells.

Giobbe GG, Zagallo M, Riello M, Serena E, Masi G, Barzon L, Di Camillo B, Elvassore N.

Biotechnol Bioeng. 2012 Dec;109(12):3119-32. doi: 10.1002/bit.24571. Epub 2012 Jun 20.

PMID:
22674472
[PubMed - indexed for MEDLINE]
20.

Qualitative reasoning for biological network inference from systematic perturbation experiments.

Badaloni S, Di Camillo B, Sambo F.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Sep-Oct;9(5):1482-91.

PMID:
22585141
[PubMed - indexed for MEDLINE]

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