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Results: 10

1.

A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress.

Dharmawardhana P, Ren L, Amarasinghe V, Monaco M, Thomason J, Ravenscroft D, McCouch S, Ware D, Jaiswal P.

Rice (N Y). 2013 May 29;6(1):15. doi: 10.1186/1939-8433-6-15.

PMID:
24280345
[PubMed]
2.

Gramene 2013: comparative plant genomics resources.

Monaco MK, Stein J, Naithani S, Wei S, Dharmawardhana P, Kumari S, Amarasinghe V, Youens-Clark K, Thomason J, Preece J, Pasternak S, Olson A, Jiao Y, Lu Z, Bolser D, Kerhornou A, Staines D, Walts B, Wu G, D'Eustachio P, Haw R, Croft D, Kersey PJ, Stein L, Jaiswal P, Ware D.

Nucleic Acids Res. 2014 Jan;42(Database issue):D1193-9. doi: 10.1093/nar/gkt1110. Epub 2013 Nov 11.

PMID:
24217918
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus.

Rodgers-Melnick E, Mane SP, Dharmawardhana P, Slavov GT, Crasta OR, Strauss SH, Brunner AM, Difazio SP.

Genome Res. 2012 Jan;22(1):95-105. doi: 10.1101/gr.125146.111. Epub 2011 Oct 5.

PMID:
21974993
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules.

Filichkin SA, Breton G, Priest HD, Dharmawardhana P, Jaiswal P, Fox SE, Michael TP, Chory J, Kay SA, Mockler TC.

PLoS One. 2011;6(6):e16907. doi: 10.1371/journal.pone.0016907. Epub 2011 Jun 9.

PMID:
21694767
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The genome of woodland strawberry (Fragaria vesca).

Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton JM, Rees DJ, Williams KP, Holt SH, Ruiz Rojas JJ, Chatterjee M, Liu B, Silva H, Meisel L, Adato A, Filichkin SA, Troggio M, Viola R, Ashman TL, Wang H, Dharmawardhana P, Elser J, Raja R, Priest HD, Bryant DW Jr, Fox SE, Givan SA, Wilhelm LJ, Naithani S, Christoffels A, Salama DY, Carter J, Lopez Girona E, Zdepski A, Wang W, Kerstetter RA, Schwab W, Korban SS, Davik J, Monfort A, Denoyes-Rothan B, Arus P, Mittler R, Flinn B, Aharoni A, Bennetzen JL, Salzberg SL, Dickerman AW, Velasco R, Borodovsky M, Veilleux RE, Folta KM.

Nat Genet. 2011 Feb;43(2):109-16. doi: 10.1038/ng.740. Epub 2010 Dec 26.

PMID:
21186353
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Gramene database in 2010: updates and extensions.

Youens-Clark K, Buckler E, Casstevens T, Chen C, Declerck G, Derwent P, Dharmawardhana P, Jaiswal P, Kersey P, Karthikeyan AS, Lu J, McCouch SR, Ren L, Spooner W, Stein JC, Thomason J, Wei S, Ware D.

Nucleic Acids Res. 2011 Jan;39(Database issue):D1085-94. doi: 10.1093/nar/gkq1148. Epub 2010 Nov 13.

PMID:
21076153
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Gibberellin-associated cisgenes modify growth, stature and wood properties in Populus.

Han KM, Dharmawardhana P, Arias RS, Ma C, Busov V, Strauss SH.

Plant Biotechnol J. 2011 Feb;9(2):162-78. doi: 10.1111/j.1467-7652.2010.00537.x.

PMID:
20573046
[PubMed - indexed for MEDLINE]
8.

Genome-wide transcriptome analysis of the transition from primary to secondary stem development in Populus trichocarpa.

Dharmawardhana P, Brunner AM, Strauss SH.

BMC Genomics. 2010 Mar 4;11:150. doi: 10.1186/1471-2164-11-150.

PMID:
20199690
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genome scale transcriptome analysis of shoot organogenesis in Populus.

Bao Y, Dharmawardhana P, Mockler TC, Strauss SH.

BMC Plant Biol. 2009 Nov 17;9:132. doi: 10.1186/1471-2229-9-132.

PMID:
19919717
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

WUS and STM-based reporter genes for studying meristem development in poplar.

Bao Y, Dharmawardhana P, Arias R, Allen MB, Ma C, Strauss SH.

Plant Cell Rep. 2009 Jun;28(6):947-62. doi: 10.1007/s00299-009-0685-3. Epub 2009 Mar 12.

PMID:
19280192
[PubMed - indexed for MEDLINE]

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