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Items: 14

1.

Extensive Transcriptome Changes During Natural Onset and Release of Vegetative Bud Dormancy in Populus.

Howe GT, Horvath DP, Dharmawardhana P, Priest HD, Mockler TC, Strauss SH.

Front Plant Sci. 2015 Dec 17;6:989. doi: 10.3389/fpls.2015.00989. eCollection 2015.

2.

Gramene 2016: comparative plant genomics and pathway resources.

Tello-Ruiz MK, Stein J, Wei S, Preece J, Olson A, Naithani S, Amarasinghe V, Dharmawardhana P, Jiao Y, Mulvaney J, Kumari S, Chougule K, Elser J, Wang B, Thomason J, Bolser DM, Kerhornou A, Walts B, Fonseca NA, Huerta L, Keays M, Tang YA, Parkinson H, Fabregat A, McKay S, Weiser J, D'Eustachio P, Stein L, Petryszak R, Kersey PJ, Jaiswal P, Ware D.

Nucleic Acids Res. 2016 Jan 4;44(D1):D1133-40. doi: 10.1093/nar/gkv1179. Epub 2015 Nov 8.

3.

Environmental stresses modulate abundance and timing of alternatively spliced circadian transcripts in Arabidopsis.

Filichkin SA, Cumbie JS, Dharmawardhana P, Jaiswal P, Chang JH, Palusa SG, Reddy AS, Megraw M, Mockler TC.

Mol Plant. 2015 Feb;8(2):207-27. doi: 10.1016/j.molp.2014.10.011. Epub 2015 Jan 8.

4.

The floral transcriptome of Eucalyptus grandis.

Vining KJ, Romanel E, Jones RC, Klocko A, Alves-Ferreira M, Hefer CA, Amarasinghe V, Dharmawardhana P, Naithani S, Ranik M, Wesley-Smith J, Solomon L, Jaiswal P, Myburg AA, Strauss SH.

New Phytol. 2015 Jun;206(4):1406-22. doi: 10.1111/nph.13077. Epub 2014 Oct 29.

PMID:
25353719
5.

A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress.

Dharmawardhana P, Ren L, Amarasinghe V, Monaco M, Thomason J, Ravenscroft D, McCouch S, Ware D, Jaiswal P.

Rice (N Y). 2013 May 29;6(1):15. doi: 10.1186/1939-8433-6-15.

PMID:
24280345
6.

Gramene 2013: comparative plant genomics resources.

Monaco MK, Stein J, Naithani S, Wei S, Dharmawardhana P, Kumari S, Amarasinghe V, Youens-Clark K, Thomason J, Preece J, Pasternak S, Olson A, Jiao Y, Lu Z, Bolser D, Kerhornou A, Staines D, Walts B, Wu G, D'Eustachio P, Haw R, Croft D, Kersey PJ, Stein L, Jaiswal P, Ware D.

Nucleic Acids Res. 2014 Jan;42(Database issue):D1193-9. doi: 10.1093/nar/gkt1110. Epub 2013 Nov 11.

7.

Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus.

Rodgers-Melnick E, Mane SP, Dharmawardhana P, Slavov GT, Crasta OR, Strauss SH, Brunner AM, Difazio SP.

Genome Res. 2012 Jan;22(1):95-105. doi: 10.1101/gr.125146.111. Epub 2011 Oct 5.

8.

Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules.

Filichkin SA, Breton G, Priest HD, Dharmawardhana P, Jaiswal P, Fox SE, Michael TP, Chory J, Kay SA, Mockler TC.

PLoS One. 2011;6(6):e16907. doi: 10.1371/journal.pone.0016907. Epub 2011 Jun 9.

9.

The genome of woodland strawberry (Fragaria vesca).

Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton JM, Rees DJ, Williams KP, Holt SH, Ruiz Rojas JJ, Chatterjee M, Liu B, Silva H, Meisel L, Adato A, Filichkin SA, Troggio M, Viola R, Ashman TL, Wang H, Dharmawardhana P, Elser J, Raja R, Priest HD, Bryant DW Jr, Fox SE, Givan SA, Wilhelm LJ, Naithani S, Christoffels A, Salama DY, Carter J, Lopez Girona E, Zdepski A, Wang W, Kerstetter RA, Schwab W, Korban SS, Davik J, Monfort A, Denoyes-Rothan B, Arus P, Mittler R, Flinn B, Aharoni A, Bennetzen JL, Salzberg SL, Dickerman AW, Velasco R, Borodovsky M, Veilleux RE, Folta KM.

Nat Genet. 2011 Feb;43(2):109-16. doi: 10.1038/ng.740. Epub 2010 Dec 26.

10.

Gramene database in 2010: updates and extensions.

Youens-Clark K, Buckler E, Casstevens T, Chen C, Declerck G, Derwent P, Dharmawardhana P, Jaiswal P, Kersey P, Karthikeyan AS, Lu J, McCouch SR, Ren L, Spooner W, Stein JC, Thomason J, Wei S, Ware D.

Nucleic Acids Res. 2011 Jan;39(Database issue):D1085-94. doi: 10.1093/nar/gkq1148. Epub 2010 Nov 13.

11.

Gibberellin-associated cisgenes modify growth, stature and wood properties in Populus.

Han KM, Dharmawardhana P, Arias RS, Ma C, Busov V, Strauss SH.

Plant Biotechnol J. 2011 Feb;9(2):162-78. doi: 10.1111/j.1467-7652.2010.00537.x.

PMID:
20573046
12.

Genome-wide transcriptome analysis of the transition from primary to secondary stem development in Populus trichocarpa.

Dharmawardhana P, Brunner AM, Strauss SH.

BMC Genomics. 2010 Mar 4;11:150. doi: 10.1186/1471-2164-11-150.

13.

Genome scale transcriptome analysis of shoot organogenesis in Populus.

Bao Y, Dharmawardhana P, Mockler TC, Strauss SH.

BMC Plant Biol. 2009 Nov 17;9:132. doi: 10.1186/1471-2229-9-132.

14.

WUS and STM-based reporter genes for studying meristem development in poplar.

Bao Y, Dharmawardhana P, Arias R, Allen MB, Ma C, Strauss SH.

Plant Cell Rep. 2009 Jun;28(6):947-62. doi: 10.1007/s00299-009-0685-3. Epub 2009 Mar 12.

PMID:
19280192
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