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Results: 1 to 20 of 23

1.

DNA materials: bridging nanotechnology and biotechnology.

Yang D, Hartman MR, Derrien TL, Hamada S, An D, Yancey KG, Cheng R, Ma M, Luo D.

Acc Chem Res. 2014 Jun 17;47(6):1902-11. doi: 10.1021/ar5001082. Epub 2014 Jun 2.

PMID:
24884022
[PubMed - in process]
2.

Rippled area formed by surface plasmon polaritons upon femtosecond laser double-pulse irradiation of silicon.

Derrien TJ, Krüger J, Itina TE, Höhm S, Rosenfeld A, Bonse J.

Opt Express. 2013 Dec 2;21(24):29643-55. doi: 10.1364/OE.21.029643.

PMID:
24514516
[PubMed]
3.

Crystallization of DNA-capped gold nanoparticles in high-concentration, divalent salt environments.

Tan SJ, Kahn JS, Derrien TL, Campolongo MJ, Zhao M, Smilgies DM, Luo D.

Angew Chem Int Ed Engl. 2014 Jan 27;53(5):1316-9. doi: 10.1002/anie.201307113. Epub 2013 Dec 20.

PMID:
24459055
[PubMed - indexed for MEDLINE]
4.

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A, Knowles DG, Lagarde J, Veeravalli L, Ruan X, Ruan Y, Lassmann T, Carninci P, Brown JB, Lipovich L, Gonzalez JM, Thomas M, Davis CA, Shiekhattar R, Gingeras TR, Hubbard TJ, Notredame C, Harrow J, Guigó R.

Genome Res. 2012 Sep;22(9):1775-89. doi: 10.1101/gr.132159.111.

PMID:
22955988
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

GENCODE: the reference human genome annotation for The ENCODE Project.

Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa A, Searle S, Barnes I, Bignell A, Boychenko V, Hunt T, Kay M, Mukherjee G, Rajan J, Despacio-Reyes G, Saunders G, Steward C, Harte R, Lin M, Howald C, Tanzer A, Derrien T, Chrast J, Walters N, Balasubramanian S, Pei B, Tress M, Rodriguez JM, Ezkurdia I, van Baren J, Brent M, Haussler D, Kellis M, Valencia A, Reymond A, Gerstein M, Guigó R, Hubbard TJ.

Genome Res. 2012 Sep;22(9):1760-74. doi: 10.1101/gr.135350.111.

PMID:
22955987
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome.

Howald C, Tanzer A, Chrast J, Kokocinski F, Derrien T, Walters N, Gonzalez JM, Frankish A, Aken BL, Hourlier T, Vogel JH, White S, Searle S, Harrow J, Hubbard TJ, Guigó R, Reymond A.

Genome Res. 2012 Sep;22(9):1698-710. doi: 10.1101/gr.134478.111.

PMID:
22955982
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Landscape of transcription in human cells.

Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, Schlesinger F, Xue C, Marinov GK, Khatun J, Williams BA, Zaleski C, Rozowsky J, Röder M, Kokocinski F, Abdelhamid RF, Alioto T, Antoshechkin I, Baer MT, Bar NS, Batut P, Bell K, Bell I, Chakrabortty S, Chen X, Chrast J, Curado J, Derrien T, Drenkow J, Dumais E, Dumais J, Duttagupta R, Falconnet E, Fastuca M, Fejes-Toth K, Ferreira P, Foissac S, Fullwood MJ, Gao H, Gonzalez D, Gordon A, Gunawardena H, Howald C, Jha S, Johnson R, Kapranov P, King B, Kingswood C, Luo OJ, Park E, Persaud K, Preall JB, Ribeca P, Risk B, Robyr D, Sammeth M, Schaffer L, See LH, Shahab A, Skancke J, Suzuki AM, Takahashi H, Tilgner H, Trout D, Walters N, Wang H, Wrobel J, Yu Y, Ruan X, Hayashizaki Y, Harrow J, Gerstein M, Hubbard T, Reymond A, Antonarakis SE, Hannon G, Giddings MC, Ruan Y, Wold B, Carninci P, Guigó R, Gingeras TR.

Nature. 2012 Sep 6;489(7414):101-8. doi: 10.1038/nature11233.

PMID:
22955620
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The Long Non-Coding RNAs: A New (P)layer in the "Dark Matter".

Derrien T, Guigó R, Johnson R.

Front Genet. 2012 Jan 9;2:107. doi: 10.3389/fgene.2011.00107. eCollection 2011.

PMID:
22303401
[PubMed]
Free PMC Article
9.

Fast computation and applications of genome mappability.

Derrien T, Estellé J, Marco Sola S, Knowles DG, Raineri E, Guigó R, Ribeca P.

PLoS One. 2012;7(1):e30377. doi: 10.1371/journal.pone.0030377. Epub 2012 Jan 19.

PMID:
22276185
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Annotation of the domestic dog genome sequence: finding the missing genes.

Derrien T, Vaysse A, André C, Hitte C.

Mamm Genome. 2012 Feb;23(1-2):124-31. doi: 10.1007/s00335-011-9372-0. Epub 2011 Nov 11.

PMID:
22076420
[PubMed - indexed for MEDLINE]
11.

Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping.

Vaysse A, Ratnakumar A, Derrien T, Axelsson E, Rosengren Pielberg G, Sigurdsson S, Fall T, Seppälä EH, Hansen MS, Lawley CT, Karlsson EK; LUPA Consortium, Bannasch D, Vilà C, Lohi H, Galibert F, Fredholm M, Häggström J, Hedhammar A, André C, Lindblad-Toh K, Hitte C, Webster MT.

PLoS Genet. 2011 Oct;7(10):e1002316. doi: 10.1371/journal.pgen.1002316. Epub 2011 Oct 13.

PMID:
22022279
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The origins, evolution, and functional potential of alternative splicing in vertebrates.

Mudge JM, Frankish A, Fernandez-Banet J, Alioto T, Derrien T, Howald C, Reymond A, Guigó R, Hubbard T, Harrow J.

Mol Biol Evol. 2011 Oct;28(10):2949-59. doi: 10.1093/molbev/msr127. Epub 2011 May 6.

PMID:
21551269
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

[Long non-coding RNAs with enhancer-like function in human cells].

Derrien T, Guigó R.

Med Sci (Paris). 2011 Apr;27(4):359-61. doi: 10.1051/medsci/2011274009. Epub 2011 Apr 28. French. No abstract available.

PMID:
21524398
[PubMed - indexed for MEDLINE]
Free Article
14.

Long noncoding RNAs as enhancers of gene expression.

Ørom UA, Derrien T, Guigo R, Shiekhattar R.

Cold Spring Harb Symp Quant Biol. 2010;75:325-31. doi: 10.1101/sqb.2010.75.058. Epub 2011 Apr 18.

PMID:
21502407
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Long noncoding RNAs with enhancer-like function in human cells.

Ørom UA, Derrien T, Beringer M, Gumireddy K, Gardini A, Bussotti G, Lai F, Zytnicki M, Notredame C, Huang Q, Guigo R, Shiekhattar R.

Cell. 2010 Oct 1;143(1):46-58. doi: 10.1016/j.cell.2010.09.001.

PMID:
20887892
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Revisiting the missing protein-coding gene catalog of the domestic dog.

Derrien T, Thézé J, Vaysse A, André C, Ostrander EA, Galibert F, Hitte C.

BMC Genomics. 2009 Feb 4;10:62. doi: 10.1186/1471-2164-10-62.

PMID:
19193219
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Analysis of the unassembled part of the dog genome sequence: chromosomal localization of 115 genes inferred from multispecies comparative genomics.

Derrien T, André C, Galibert F, Hitte C.

J Hered. 2007;98(5):461-7. Epub 2007 Jun 15.

PMID:
17573383
[PubMed - indexed for MEDLINE]
Free Article
18.

A comparative genome approach to marker ordering.

Faraut T, de Givry S, Chabrier P, Derrien T, Galibert F, Hitte C, Schiex T.

Bioinformatics. 2007 Jan 15;23(2):e50-6.

PMID:
17237105
[PubMed - indexed for MEDLINE]
Free Article
19.

AutoGRAPH: an interactive web server for automating and visualizing comparative genome maps.

Derrien T, André C, Galibert F, Hitte C.

Bioinformatics. 2007 Feb 15;23(4):498-9. Epub 2006 Dec 4.

PMID:
17145741
[PubMed - indexed for MEDLINE]
Free Article
20.

Coat colour in dogs: identification of the merle locus in the Australian shepherd breed.

Hédan B, Corre S, Hitte C, Dréano S, Vilboux T, Derrien T, Denis B, Galibert F, Galibert MD, André C.

BMC Vet Res. 2006 Feb 27;2:9.

PMID:
16504149
[PubMed]
Free PMC Article

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