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Results: 16

1.

A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor.

Luo MC, Gu YQ, You FM, Deal KR, Ma Y, Hu Y, Huo N, Wang Y, Wang J, Chen S, Jorgensen CM, Zhang Y, McGuire PE, Pasternak S, Stein JC, Ware D, Kramer M, McCombie WR, Kianian SF, Martis MM, Mayer KF, Sehgal SK, Li W, Gill BS, Bevan MW, Simková H, Dolezel J, Weining S, Lazo GR, Anderson OD, Dvorak J.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7940-5. doi: 10.1073/pnas.1219082110. Epub 2013 Apr 22.

PMID:
23610408
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Rapid genome mapping in nanochannel arrays for highly complete and accurate de novo sequence assembly of the complex Aegilops tauschii genome.

Hastie AR, Dong L, Smith A, Finklestein J, Lam ET, Huo N, Cao H, Kwok PY, Deal KR, Dvorak J, Luo MC, Gu Y, Xiao M.

PLoS One. 2013;8(2):e55864. doi: 10.1371/journal.pone.0055864. Epub 2013 Feb 6.

PMID:
23405223
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Insular organization of gene space in grass genomes.

Gottlieb A, Müller HG, Massa AN, Wanjugi H, Deal KR, You FM, Xu X, Gu YQ, Luo MC, Anderson OD, Chan AP, Rabinowicz P, Devos KM, Dvorak J.

PLoS One. 2013;8(1):e54101. doi: 10.1371/journal.pone.0054101. Epub 2013 Jan 11.

PMID:
23326580
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Genome-wide SNP discovery in walnut with an AGSNP pipeline updated for SNP discovery in allogamous organisms.

You FM, Deal KR, Wang J, Britton MT, Fass JN, Lin D, Dandekar AM, Leslie CA, Aradhya M, Luo MC, Dvorak J.

BMC Genomics. 2012 Jul 31;13:354. doi: 10.1186/1471-2164-13-354.

PMID:
22849334
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The origin of spelt and free-threshing hexaploid wheat.

Dvorak J, Deal KR, Luo MC, You FM, von Borstel K, Dehghani H.

J Hered. 2012 May-Jun;103(3):426-41. doi: 10.1093/jhered/esr152. Epub 2012 Feb 29.

PMID:
22378960
[PubMed - indexed for MEDLINE]
Free Article
6.

Gene space dynamics during the evolution of Aegilops tauschii, Brachypodium distachyon, Oryza sativa, and Sorghum bicolor genomes.

Massa AN, Wanjugi H, Deal KR, O'Brien K, You FM, Maiti R, Chan AP, Gu YQ, Luo MC, Anderson OD, Rabinowicz PD, Dvorak J, Devos KM.

Mol Biol Evol. 2011 Sep;28(9):2537-47. doi: 10.1093/molbev/msr080. Epub 2011 Apr 6.

PMID:
21470968
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence.

You FM, Huo N, Deal KR, Gu YQ, Luo MC, McGuire PE, Dvorak J, Anderson OD.

BMC Genomics. 2011 Jan 25;12:59. doi: 10.1186/1471-2164-12-59.

PMID:
21266061
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes.

Akhunov ED, Akhunova AR, Anderson OD, Anderson JA, Blake N, Clegg MT, Coleman-Derr D, Conley EJ, Crossman CC, Deal KR, Dubcovsky J, Gill BS, Gu YQ, Hadam J, Heo H, Huo N, Lazo GR, Luo MC, Ma YQ, Matthews DE, McGuire PE, Morrell PL, Qualset CO, Renfro J, Tabanao D, Talbert LE, Tian C, Toleno DM, Warburton ML, You FM, Zhang W, Dvorak J.

BMC Genomics. 2010 Dec 14;11:702. doi: 10.1186/1471-2164-11-702.

PMID:
21156062
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A new implementation of high-throughput five-dimensional clone pooling strategy for BAC library screening.

You FM, Luo MC, Xu K, Deal KR, Anderson OD, Dvorak J.

BMC Genomics. 2010 Dec 6;11:692. doi: 10.1186/1471-2164-11-692.

PMID:
21129228
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS.

Fleury D, Luo MC, Dvorak J, Ramsay L, Gill BS, Anderson OD, You FM, Shoaei Z, Deal KR, Langridge P.

BMC Genomics. 2010 Jun 17;11:382. doi: 10.1186/1471-2164-11-382.

PMID:
20553621
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genome comparisons reveal a dominant mechanism of chromosome number reduction in grasses and accelerated genome evolution in Triticeae.

Luo MC, Deal KR, Akhunov ED, Akhunova AR, Anderson OD, Anderson JA, Blake N, Clegg MT, Coleman-Derr D, Conley EJ, Crossman CC, Dubcovsky J, Gill BS, Gu YQ, Hadam J, Heo HY, Huo N, Lazo G, Ma Y, Matthews DE, McGuire PE, Morrell PL, Qualset CO, Renfro J, Tabanao D, Talbert LE, Tian C, Toleno DM, Warburton ML, You FM, Zhang W, Dvorak J.

Proc Natl Acad Sci U S A. 2009 Sep 15;106(37):15780-5. doi: 10.1073/pnas.0908195106. Epub 2009 Aug 26.

PMID:
19717446
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A high-throughput strategy for screening of bacterial artificial chromosome libraries and anchoring of clones on a genetic map constructed with single nucleotide polymorphisms.

Luo MC, Xu K, Ma Y, Deal KR, Nicolet CM, Dvorak J.

BMC Genomics. 2009 Jan 18;10:28. doi: 10.1186/1471-2164-10-28.

PMID:
19149906
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Discovery and mapping of wheat Ph1 suppressors.

Dvorak J, Deal KR, Luo MC.

Genetics. 2006 Sep;174(1):17-27. Epub 2006 May 15.

PMID:
16702426
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Molecular characterization of a diagnostic DNA marker for domesticated tetraploid wheat provides evidence for gene flow from wild tetraploid wheat to hexaploid wheat.

Dvorak J, Akhunov ED, Akhunov AR, Deal KR, Luo MC.

Mol Biol Evol. 2006 Jul;23(7):1386-96. Epub 2006 May 4.

PMID:
16675504
[PubMed - indexed for MEDLINE]
Free Article
15.

Comparative genetic maps reveal extreme crossover localization in the Aegilops speltoides chromosomes.

Luo MC, Deal KR, Yang ZL, Dvorak J.

Theor Appl Genet. 2005 Oct;111(6):1098-106. Epub 2005 Oct 11.

PMID:
16088396
[PubMed - indexed for MEDLINE]
16.

Construction and evaluation of cDNA libraries for large-scale expressed sequence tag sequencing in wheat (Triticum aestivum L.).

Zhang D, Choi DW, Wanamaker S, Fenton RD, Chin A, Malatrasi M, Turuspekov Y, Walia H, Akhunov ED, Kianian P, Otto C, Simons K, Deal KR, Echenique V, Stamova B, Ross K, Butler GE, Strader L, Verhey SD, Johnson R, Altenbach S, Kothari K, Tanaka C, Shah MM, Laudencia-Chingcuanco D, Han P, Miller RE, Crossman CC, Chao S, Lazo GR, Klueva N, Gustafson JP, Kianian SF, Dubcovsky J, Walker-Simmons MK, Gill KS, Dvorák J, Anderson OD, Sorrells ME, McGuire PE, Qualset CO, Nguyen HT, Close TJ.

Genetics. 2004 Oct;168(2):595-608.

PMID:
15514038
[PubMed - indexed for MEDLINE]
Free PMC Article

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