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Items: 11

1.

Corrigendum: A genome-wide search for epigenetically regulated genes in zebra finch using MethylCap-seq and RNA-seq.

Steyaert S, Diddens J, Galle J, De Meester E, De Keulenaer S, Bakker A, Sohnius-Wilhelmi N, Frankl-Vilches C, Van der Linden A, Van Criekinge W, Berghe WV, De Meyer T.

Sci Rep. 2016 Mar 17;6:22472. doi: 10.1038/srep22472. No abstract available.

2.

A genome-wide search for eigenetically regulated genes in zebra finch using MethylCap-seq and RNA-seq.

Steyaert S, Diddens J, Galle J, De Meester E, De Keulenaer S, Bakker A, Sohnius-Wilhelmi N, Frankl-Vilches C, Van der Linden A, Van Criekinge W, Vanden Berghe W, De Meyer T.

Sci Rep. 2016 Feb 11;6:20957. doi: 10.1038/srep20957.

3.

Toward the most ideal case-control design with related and unrelated dogs in whole-exome sequencing studies.

Broeckx BJ, Coopman F, Verhoeven GE, De Keulenaer S, De Meester E, Bavegems V, Smets P, Van Ryssen B, Van Nieuwerburgh F, Deforce D.

Anim Genet. 2016 Apr;47(2):200-7. doi: 10.1111/age.12400. Epub 2015 Dec 22.

PMID:
26689130
4.

Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes.

Broeckx BJ, Hitte C, Coopman F, Verhoeven GE, De Keulenaer S, De Meester E, Derrien T, Alfoldi J, Lindblad-Toh K, Bosmans T, Gielen I, Van Bree H, Van Ryssen B, Saunders JH, Van Nieuwerburgh F, Deforce D.

Sci Rep. 2015 Aug 3;5:12810. doi: 10.1038/srep12810.

5.

PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration.

Crappé J, Ndah E, Koch A, Steyaert S, Gawron D, De Keulenaer S, De Meester E, De Meyer T, Van Criekinge W, Van Damme P, Menschaert G.

Nucleic Acids Res. 2015 Mar 11;43(5):e29. doi: 10.1093/nar/gku1283. Epub 2014 Dec 15.

6.

A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites.

Koch A, Gawron D, Steyaert S, Ndah E, Crappé J, De Keulenaer S, De Meester E, Ma M, Shen B, Gevaert K, Van Criekinge W, Van Damme P, Menschaert G.

Proteomics. 2014 Dec;14(23-24):2688-98. doi: 10.1002/pmic.201400180. Epub 2014 Oct 2.

7.

Illumina sequencing of 15 deafness genes using fragmented amplicons.

Van Nieuwerburgh F, De Keulenaer S, De Schrijver J, Vandesompele J, Van Criekinge W, Coucke PJ, Deforce D.

BMC Res Notes. 2014 Aug 9;7:509. doi: 10.1186/1756-0500-7-509.

8.

Development and performance of a targeted whole exome sequencing enrichment kit for the dog (Canis Familiaris Build 3.1).

Broeckx BJ, Coopman F, Verhoeven GE, Bavegems V, De Keulenaer S, De Meester E, Van Niewerburgh F, Deforce D.

Sci Rep. 2014 Jul 7;4:5597. doi: 10.1038/srep05597.

9.

Quality evaluation of methyl binding domain based kits for enrichment DNA-methylation sequencing.

De Meyer T, Mampaey E, Vlemmix M, Denil S, Trooskens G, Renard JP, De Keulenaer S, Dehan P, Menschaert G, Van Criekinge W.

PLoS One. 2013;8(3):e59068. doi: 10.1371/journal.pone.0059068. Epub 2013 Mar 15.

10.

Molecular diagnostics for congenital hearing loss including 15 deafness genes using a next generation sequencing platform.

De Keulenaer S, Hellemans J, Lefever S, Renard JP, De Schrijver J, Van de Voorde H, Tabatabaiefar MA, Van Nieuwerburgh F, Flamez D, Pattyn F, Scharlaken B, Deforce D, Bekaert S, Van Criekinge W, Vandesompele J, Van Camp G, Coucke P.

BMC Med Genomics. 2012 May 18;5:17. doi: 10.1186/1755-8794-5-17.

11.

Practical tools to implement massive parallel pyrosequencing of PCR products in next generation molecular diagnostics.

De Leeneer K, De Schrijver J, Clement L, Baetens M, Lefever S, De Keulenaer S, Van Criekinge W, Deforce D, Van Nieuwerburgh F, Bekaert S, Pattyn F, De Wilde B, Coucke P, Vandesompele J, Claes K, Hellemans J.

PLoS One. 2011;6(9):e25531. doi: 10.1371/journal.pone.0025531. Epub 2011 Sep 30.

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