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Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences.

Poznik GD, Xue Y, Mendez FL, Willems TF, Massaia A, Wilson Sayres MA, Ayub Q, McCarthy SA, Narechania A, Kashin S, Chen Y, Banerjee R, Rodriguez-Flores JL, Cerezo M, Shao H, Gymrek M, Malhotra A, Louzada S, Desalle R, Ritchie GR, Cerveira E, Fitzgerald TW, Garrison E, Marcketta A, Mittelman D, Romanovitch M, Zhang C, Zheng-Bradley X, Abecasis GR, McCarroll SA, Flicek P, Underhill PA, Coin L, Zerbino DR, Yang F, Lee C, Clarke L, Auton A, Erlich Y, Handsaker RE; 1000 Genomes Project Consortium, Bustamante CD, Tyler-Smith C.

Nat Genet. 2016 Jun;48(6):593-9. doi: 10.1038/ng.3559. Epub 2016 Apr 25.


What do our genes tell us about our past?

DeSalle R.

J Anthropol Sci. 2016 Apr 11. [Epub ahead of print]


Spermatogenesis Drives Rapid Gene Creation and Masculinization of the X Chromosome in Stalk-Eyed Flies (Diopsidae).

Baker RH, Narechania A, DeSalle R, Johns PM, Reinhardt JA, Wilkinson GS.

Genome Biol Evol. 2016 Mar 26;8(3):896-914. doi: 10.1093/gbe/evw043.


SCIENCE AND SOCIETY. Taking race out of human genetics.

Yudell M, Roberts D, DeSalle R, Tishkoff S.

Science. 2016 Feb 5;351(6273):564-5. doi: 10.1126/science.aac4951. No abstract available.


Data for constructing insect genome content matrices for phylogenetic analysis and functional annotation.

Rosenfeld J, Foox J, DeSalle R.

Data Brief. 2015 Dec 17;6:279-81. doi: 10.1016/j.dib.2015.12.015. eCollection 2016 Mar.


Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius.

Rosenfeld JA, Reeves D, Brugler MR, Narechania A, Simon S, Durrett R, Foox J, Shianna K, Schatz MC, Gandara J, Afshinnekoo E, Lam ET, Hastie AR, Chan S, Cao H, Saghbini M, Kentsis A, Planet PJ, Kholodovych V, Tessler M, Baker R, DeSalle R, Sorkin LN, Kolokotronis SO, Siddall ME, Amato G, Mason CE.

Nat Commun. 2016 Feb 2;7:10164. doi: 10.1038/ncomms10164.


Comments on Smith (2015)-'The past, present and future of mitochondrial genomics: have we sequenced enough mtDNAs'.

DeSalle R.

Brief Funct Genomics. 2015 Nov 17. pii: elv052. [Epub ahead of print] No abstract available.


Adaptive Evolution of Eel Fluorescent Proteins from Fatty Acid Binding Proteins Produces Bright Fluorescence in the Marine Environment.

Gruber DF, Gaffney JP, Mehr S, DeSalle R, Sparks JS, Platisa J, Pieribone VA.

PLoS One. 2015 Nov 11;10(11):e0140972. doi: 10.1371/journal.pone.0140972. eCollection 2015.


Insect genome content phylogeny and functional annotation of core insect genomes.

Rosenfeld JA, Foox J, DeSalle R.

Mol Phylogenet Evol. 2016 Apr;97:224-32. doi: 10.1016/j.ympev.2015.10.014. Epub 2015 Nov 5.


Degradation of Human PDZ-Proteins by Human Alphapapillomaviruses Represents an Evolutionary Adaptation to a Novel Cellular Niche.

Van Doorslaer K, DeSalle R, Einstein MH, Burk RD.

PLoS Pathog. 2015 Jun 18;11(6):e1004980. doi: 10.1371/journal.ppat.1004980. eCollection 2015 Jun.


Transcriptome sequencing and annotation of the polychaete Hermodice carunculata (Annelida, Amphinomidae).

Mehr S, Verdes A, DeSalle R, Sparks J, Pieribone V, Gruber DF.

BMC Genomics. 2015 Jun 10;16:445. doi: 10.1186/s12864-015-1565-6.


Changes in the Mitogenome Announcement manuscript category.

DeSalle R, Kolokotronis SO.

Mitochondrial DNA. 2015 Feb;26(1):1. doi: 10.3109/19401736.2015.1013392. Epub 2015 Feb 19. No abstract available.


We can't all be supermodels: the value of comparative transcriptomics to the study of non-model insects.

Oppenheim SJ, Baker RH, Simon S, DeSalle R.

Insect Mol Biol. 2015 Apr;24(2):139-54. doi: 10.1111/imb.12154. Epub 2014 Dec 19. Review.


Evolutionary dynamics of Polynucelotide phosphorylases.

Sokhi UK, DeSalle R, Bacolod MD, Das SK, Dasgupta S, Sarkar D, Fisher PB.

Mol Phylogenet Evol. 2014 Apr;73:77-86. doi: 10.1016/j.ympev.2014.01.020. Epub 2014 Feb 3.


Generation of divergent uroplakin tetraspanins and their partners during vertebrate evolution: identification of novel uroplakins.

Desalle R, Chicote JU, Sun TT, Garcia-EspaƱa A.

BMC Evol Biol. 2014 Jan 23;14:13. doi: 10.1186/1471-2148-14-13.


Mitogenomics and metazoan evolution.

Schierwater B, Stadler P, Desalle R, Podsiadlowski L.

Mol Phylogenet Evol. 2013 Nov;69(2):311-2. doi: 10.1016/j.ympev.2013.08.009. No abstract available.


Evolution and taxonomic classification of alphapapillomavirus 7 complete genomes: HPV18, HPV39, HPV45, HPV59, HPV68 and HPV70.

Chen Z, Schiffman M, Herrero R, DeSalle R, Anastos K, Segondy M, Sahasrabuddhe VV, Gravitt PE, Hsing AW, Burk RD.

PLoS One. 2013 Aug 16;8(8):e72565. doi: 10.1371/journal.pone.0072565. eCollection 2013.


Transcriptome deep-sequencing and clustering of expressed isoforms from Favia corals.

Pooyaei Mehr SF, DeSalle R, Kao HT, Narechania A, Han Z, Tchernov D, Pieribone V, Gruber DF.

BMC Genomics. 2013 Aug 12;14:546. doi: 10.1186/1471-2164-14-546.


Lack of population genetic structure and host specificity in the bat fly, Cyclopodia horsfieldi, across species of Pteropus bats in Southeast Asia.

Olival KJ, Dick CW, Simmons NB, Morales JC, Melnick DJ, Dittmar K, Perkins SL, Daszak P, Desalle R.

Parasit Vectors. 2013 Aug 8;6:231. doi: 10.1186/1756-3305-6-231.


AEG-1/MTDH/LYRIC, the beginning: initial cloning, structure, expression profile, and regulation of expression.

Lee SG, Kang DC, DeSalle R, Sarkar D, Fisher PB.

Adv Cancer Res. 2013;120:1-38. doi: 10.1016/B978-0-12-401676-7.00001-2. Review.

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