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Results: 1 to 20 of 117

1.

Genome-wide regulatory dynamics of translation in the Plasmodium falciparum asexual blood stages.

Caro F, Ahyong V, Betegon M, DeRisi JL.

Elife. 2014 Dec 10;3. doi: 10.7554/eLife.04106.

2.

(+)-SJ733, a clinical candidate for malaria that acts through ATP4 to induce rapid host-mediated clearance of Plasmodium.

Jiménez-Díaz MB, Ebert D, Salinas Y, Pradhan A, Lehane AM, Myrand-Lapierre ME, O'Loughlin KG, Shackleford DM, Justino de Almeida M, Carrillo AK, Clark JA, Dennis AS, Diep J, Deng X, Duffy S, Endsley AN, Fedewa G, Guiguemde WA, Gómez MG, Holbrook G, Horst J, Kim CC, Liu J, Lee MC, Matheny A, Martínez MS, Miller G, Rodríguez-Alejandre A, Sanz L, Sigal M, Spillman NJ, Stein PD, Wang Z, Zhu F, Waterson D, Knapp S, Shelat A, Avery VM, Fidock DA, Gamo FJ, Charman SA, Mirsalis JC, Ma H, Ferrer S, Kirk K, Angulo-Barturen I, Kyle DE, DeRisi JL, Floyd DM, Guy RK.

Proc Natl Acad Sci U S A. 2014 Dec 16;111(50):E5455-62. doi: 10.1073/pnas.1414221111. Epub 2014 Dec 1.

PMID:
25453091
3.

Taxonomic reorganization of the family Bornaviridae.

Kuhn JH, Dürrwald R, Bào Y, Briese T, Carbone K, Clawson AN, deRisi JL, Garten W, Jahrling PB, Kolodziejek J, Rubbenstroth D, Schwemmle M, Stenglein M, Tomonaga K, Weissenböck H, Nowotny N.

Arch Virol. 2015 Feb;160(2):621-32. doi: 10.1007/s00705-014-2276-z. Epub 2014 Dec 2.

PMID:
25449305
4.

A chemical rescue screen identifies a Plasmodium falciparum apicoplast inhibitor targeting MEP isoprenoid precursor biosynthesis.

Wu W, Herrera Z, Ebert D, Baska K, Cho SH, DeRisi JL, Yeh E.

Antimicrob Agents Chemother. 2015 Jan;59(1):356-64. doi: 10.1128/AAC.03342-14. Epub 2014 Nov 3.

PMID:
25367906
5.

Genome Sequence of a Bornavirus Recovered from an African Garter Snake (Elapsoidea loveridgei).

Stenglein MD, Leavitt EB, Abramovitch MA, McGuire JA, DeRisi JL.

Genome Announc. 2014 Oct 9;2(5). pii: e00779-14. doi: 10.1128/genomeA.00779-14.

6.

Transcriptome-wide characterization of the eIF4A signature highlights plasticity in translation regulation.

Rubio CA, Weisburd B, Holderfield M, Arias C, Fang E, DeRisi JL, Fanidi A.

Genome Biol. 2014;15(10):476.

7.

Ball python nidovirus: a candidate etiologic agent for severe respiratory disease in Python regius.

Stenglein MD, Jacobson ER, Wozniak EJ, Wellehan JF, Kincaid A, Gordon M, Porter BF, Baumgartner W, Stahl S, Kelley K, Towner JS, DeRisi JL.

MBio. 2014 Sep 9;5(5):e01484-14. doi: 10.1128/mBio.01484-14.

8.

Profile hidden Markov models for the detection of viruses within metagenomic sequence data.

Skewes-Cox P, Sharpton TJ, Pollard KS, DeRisi JL.

PLoS One. 2014 Aug 20;9(8):e105067. doi: 10.1371/journal.pone.0105067. eCollection 2014.

9.

Clinical, genomic, and metagenomic characterization of oral tongue squamous cell carcinoma in patients who do not smoke.

Li R, Faden DL, Fakhry C, Langelier C, Jiao Y, Wang Y, Wilkerson MD, Pedamallu CS, Old M, Lang J, Loyo M, Ahn SM, Tan M, Gooi Z, Chan J, Richmon J, Wood LD, Hruban RH, Bishop J, Westra WH, Chung CH, Califano J, Gourin CG, Bettegowda C, Meyerson M, Papadopoulos N, Kinzler KW, Vogelstein B, DeRisi JL, Koch WM, Agrawal N.

Head Neck. 2014 Jun 21. doi: 10.1002/hed.23807. [Epub ahead of print]

PMID:
24954188
10.

A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples.

Naccache SN, Federman S, Veeraraghavan N, Zaharia M, Lee D, Samayoa E, Bouquet J, Greninger AL, Luk KC, Enge B, Wadford DA, Messenger SL, Genrich GL, Pellegrino K, Grard G, Leroy E, Schneider BS, Fair JN, Martínez MA, Isa P, Crump JA, DeRisi JL, Sittler T, Hackett J Jr, Miller S, Chiu CY.

Genome Res. 2014 Jul;24(7):1180-92. doi: 10.1101/gr.171934.113. Epub 2014 Jun 4.

11.

Actionable diagnosis of neuroleptospirosis by next-generation sequencing.

Wilson MR, Naccache SN, Samayoa E, Biagtan M, Bashir H, Yu G, Salamat SM, Somasekar S, Federman S, Miller S, Sokolic R, Garabedian E, Candotti F, Buckley RH, Reed KD, Meyer TL, Seroogy CM, Galloway R, Henderson SL, Gern JE, DeRisi JL, Chiu CY.

N Engl J Med. 2014 Jun 19;370(25):2408-17. doi: 10.1056/NEJMoa1401268. Epub 2014 Jun 4.

12.

How duplicated transcription regulators can diversify to govern the expression of nonoverlapping sets of genes.

Pérez JC, Fordyce PM, Lohse MB, Hanson-Smith V, DeRisi JL, Johnson AD.

Genes Dev. 2014 Jun 15;28(12):1272-7. doi: 10.1101/gad.242271.114. Epub 2014 May 29.

13.

The kinase regulator mob1 acts as a patterning protein for stentor morphogenesis.

Slabodnick MM, Ruby JG, Dunn JG, Feldman JL, DeRisi JL, Marshall WF.

PLoS Biol. 2014 May 13;12(5):e1001861. doi: 10.1371/journal.pbio.1001861. eCollection 2014 May.

14.

Krüppel mediates the selective rebalancing of ion channel expression.

Parrish JZ, Kim CC, Tang L, Bergquist S, Wang T, Derisi JL, Jan LY, Jan YN, Davis GW.

Neuron. 2014 May 7;82(3):537-44. doi: 10.1016/j.neuron.2014.03.015.

PMID:
24811378
15.

Structural characterization of the glycoprotein GP2 core domain from the CAS virus, a novel arenavirus-like species.

Koellhoffer JF, Dai Z, Malashkevich VN, Stenglein MD, Liu Y, Toro R, S Harrison J, Chandran K, DeRisi JL, Almo SC, Lai JR.

J Mol Biol. 2014 Apr 3;426(7):1452-68. doi: 10.1016/j.jmb.2013.12.009. Epub 2013 Dec 12.

16.

Structure of the transcriptional network controlling white-opaque switching in Candida albicans.

Hernday AD, Lohse MB, Fordyce PM, Nobile CJ, DeRisi JL, Johnson AD.

Mol Microbiol. 2013 Oct;90(1):22-35. doi: 10.1111/mmi.12329. Epub 2013 Aug 25.

17.

Microfluidic affinity and ChIP-seq analyses converge on a conserved FOXP2-binding motif in chimp and human, which enables the detection of evolutionarily novel targets.

Nelson CS, Fuller CK, Fordyce PM, Greninger AL, Li H, DeRisi JL.

Nucleic Acids Res. 2013 Jul;41(12):5991-6004. doi: 10.1093/nar/gkt259. Epub 2013 Apr 26.

18.

Identification and characterization of a previously undescribed family of sequence-specific DNA-binding domains.

Lohse MB, Hernday AD, Fordyce PM, Noiman L, Sorrells TR, Hanson-Smith V, Nobile CJ, DeRisi JL, Johnson AD.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7660-5. doi: 10.1073/pnas.1221734110. Epub 2013 Apr 22.

19.

ACBD3 interaction with TBC1 domain 22 protein is differentially affected by enteroviral and kobuviral 3A protein binding.

Greninger AL, Knudsen GM, Betegon M, Burlingame AL, DeRisi JL.

MBio. 2013 Apr 9;4(2):e00098-13. doi: 10.1128/mBio.00098-13.

20.

Bartonella quintana deploys host and vector temperature-specific transcriptomes.

Abromaitis S, Nelson CS, Previte D, Yoon KS, Clark JM, DeRisi JL, Koehler JE.

PLoS One. 2013;8(3):e58773. doi: 10.1371/journal.pone.0058773. Epub 2013 Mar 12.

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