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Results: 1 to 20 of 109

1.

Clinical, Genomic and Metagenomic Characterization of Oral Tongue Squamous Cell Carcinoma in Patients Who Do Not Smoke.

Li R, Faden DL, Fakhry C, Langelier C, Jiao Y, Wang Y, Wilkerson MD, Pedamallu CS, Old M, Lang J, Loyo M, Ahn SM, Tan M, Gooi Z, Chan J, Richmon J, Wood LD, Hruban RH, Bishop J, Westra WH, Chung CH, Califano J, Gourin CG, Bettegowda C, Meyerson M, Papadopoulos N, Kinzler KW, Vogelstein B, DeRisi JL, Koch WM, Agrawal N.

Head Neck. 2014 Jun 21. doi: 10.1002/hed.23807. [Epub ahead of print]

PMID:
24954188
[PubMed - as supplied by publisher]
2.

A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples.

Naccache SN, Federman S, Veeraraghavan N, Zaharia M, Lee D, Samayoa E, Bouquet J, Greninger AL, Luk KC, Enge B, Wadford DA, Messenger SL, Genrich GL, Pellegrino K, Grard G, Leroy E, Schneider BS, Fair JN, Martínez MA, Isa P, Crump JA, DeRisi JL, Sittler T, Hackett J Jr, Miller S, Chiu CY.

Genome Res. 2014 Jul;24(7):1180-92. doi: 10.1101/gr.171934.113. Epub 2014 Jun 4.

PMID:
24899342
[PubMed - in process]
Free PMC Article
3.

Actionable diagnosis of neuroleptospirosis by next-generation sequencing.

Wilson MR, Naccache SN, Samayoa E, Biagtan M, Bashir H, Yu G, Salamat SM, Somasekar S, Federman S, Miller S, Sokolic R, Garabedian E, Candotti F, Buckley RH, Reed KD, Meyer TL, Seroogy CM, Galloway R, Henderson SL, Gern JE, DeRisi JL, Chiu CY.

N Engl J Med. 2014 Jun 19;370(25):2408-17. doi: 10.1056/NEJMoa1401268. Epub 2014 Jun 4.

PMID:
24896819
[PubMed - indexed for MEDLINE]
4.

How duplicated transcription regulators can diversify to govern the expression of nonoverlapping sets of genes.

Pérez JC, Fordyce PM, Lohse MB, Hanson-Smith V, DeRisi JL, Johnson AD.

Genes Dev. 2014 Jun 15;28(12):1272-7. doi: 10.1101/gad.242271.114. Epub 2014 May 29.

PMID:
24874988
[PubMed - in process]
5.

The kinase regulator mob1 acts as a patterning protein for stentor morphogenesis.

Slabodnick MM, Ruby JG, Dunn JG, Feldman JL, DeRisi JL, Marshall WF.

PLoS Biol. 2014 May 13;12(5):e1001861. doi: 10.1371/journal.pbio.1001861. eCollection 2014 May.

PMID:
24823688
[PubMed - in process]
Free PMC Article
6.

Krüppel mediates the selective rebalancing of ion channel expression.

Parrish JZ, Kim CC, Tang L, Bergquist S, Wang T, Derisi JL, Jan LY, Jan YN, Davis GW.

Neuron. 2014 May 7;82(3):537-44. doi: 10.1016/j.neuron.2014.03.015.

PMID:
24811378
[PubMed - indexed for MEDLINE]
7.

Structural characterization of the glycoprotein GP2 core domain from the CAS virus, a novel arenavirus-like species.

Koellhoffer JF, Dai Z, Malashkevich VN, Stenglein MD, Liu Y, Toro R, S Harrison J, Chandran K, DeRisi JL, Almo SC, Lai JR.

J Mol Biol. 2014 Apr 3;426(7):1452-68. doi: 10.1016/j.jmb.2013.12.009. Epub 2013 Dec 12.

PMID:
24333483
[PubMed - indexed for MEDLINE]
8.

Structure of the transcriptional network controlling white-opaque switching in Candida albicans.

Hernday AD, Lohse MB, Fordyce PM, Nobile CJ, DeRisi JL, Johnson AD.

Mol Microbiol. 2013 Oct;90(1):22-35. doi: 10.1111/mmi.12329. Epub 2013 Aug 25.

PMID:
23855748
[PubMed - indexed for MEDLINE]
9.

Microfluidic affinity and ChIP-seq analyses converge on a conserved FOXP2-binding motif in chimp and human, which enables the detection of evolutionarily novel targets.

Nelson CS, Fuller CK, Fordyce PM, Greninger AL, Li H, DeRisi JL.

Nucleic Acids Res. 2013 Jul;41(12):5991-6004. doi: 10.1093/nar/gkt259. Epub 2013 Apr 26.

PMID:
23625967
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Identification and characterization of a previously undescribed family of sequence-specific DNA-binding domains.

Lohse MB, Hernday AD, Fordyce PM, Noiman L, Sorrells TR, Hanson-Smith V, Nobile CJ, DeRisi JL, Johnson AD.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7660-5. doi: 10.1073/pnas.1221734110. Epub 2013 Apr 22.

PMID:
23610392
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

ACBD3 interaction with TBC1 domain 22 protein is differentially affected by enteroviral and kobuviral 3A protein binding.

Greninger AL, Knudsen GM, Betegon M, Burlingame AL, DeRisi JL.

MBio. 2013 Apr 9;4(2):e00098-13. doi: 10.1128/mBio.00098-13.

PMID:
23572552
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Bartonella quintana deploys host and vector temperature-specific transcriptomes.

Abromaitis S, Nelson CS, Previte D, Yoon KS, Clark JM, DeRisi JL, Koehler JE.

PLoS One. 2013;8(3):e58773. doi: 10.1371/journal.pone.0058773. Epub 2013 Mar 12.

PMID:
23554923
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

PRICE: software for the targeted assembly of components of (Meta) genomic sequence data.

Ruby JG, Bellare P, Derisi JL.

G3 (Bethesda). 2013 May 20;3(5):865-80. doi: 10.1534/g3.113.005967.

PMID:
23550143
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Identification and manipulation of the molecular determinants influencing poliovirus recombination.

Runckel C, Westesson O, Andino R, DeRisi JL.

PLoS Pathog. 2013 Feb;9(2):e1003164. doi: 10.1371/journal.ppat.1003164. Epub 2013 Feb 7.

PMID:
23408891
[PubMed - in process]
Free PMC Article
15.

Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution.

Melters DP, Bradnam KR, Young HA, Telis N, May MR, Ruby JG, Sebra R, Peluso P, Eid J, Rank D, Garcia JF, Derisi JL, Smith T, Tobias C, Ross-Ibarra J, Korf I, Chan SW.

Genome Biol. 2013 Jan 30;14(1):R10. [Epub ahead of print]

PMID:
23363705
[PubMed - as supplied by publisher]
Free PMC Article
16.

Discovery of a novel polyomavirus in acute diarrheal samples from children.

Yu G, Greninger AL, Isa P, Phan TG, Martínez MA, de la Luz Sanchez M, Contreras JF, Santos-Preciado JI, Parsonnet J, Miller S, DeRisi JL, Delwart E, Arias CF, Chiu CY.

PLoS One. 2012;7(11):e49449. doi: 10.1371/journal.pone.0049449. Epub 2012 Nov 14.

PMID:
23166671
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Splenic red pulp macrophages produce type I interferons as early sentinels of malaria infection but are dispensable for control.

Kim CC, Nelson CS, Wilson EB, Hou B, DeFranco AL, DeRisi JL.

PLoS One. 2012;7(10):e48126. doi: 10.1371/journal.pone.0048126. Epub 2012 Oct 29.

PMID:
23144737
[PubMed - in process]
Free PMC Article
18.

Basic leucine zipper transcription factor Hac1 binds DNA in two distinct modes as revealed by microfluidic analyses.

Fordyce PM, Pincus D, Kimmig P, Nelson CS, El-Samad H, Walter P, DeRisi JL.

Proc Natl Acad Sci U S A. 2012 Nov 6;109(45):E3084-93. doi: 10.1073/pnas.1212457109. Epub 2012 Oct 10.

PMID:
23054834
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Programmable microfluidic synthesis of spectrally encoded microspheres.

Gerver RE, Gómez-Sjöberg R, Baxter BC, Thorn KS, Fordyce PM, Diaz-Botia CA, Helms BA, DeRisi JL.

Lab Chip. 2012 Nov 21;12(22):4716-23. doi: 10.1039/c2lc40699c.

PMID:
23042484
[PubMed - indexed for MEDLINE]
20.

Molecular insights into the biosynthesis of guadinomine: a type III secretion system inhibitor.

Holmes TC, May AE, Zaleta-Rivera K, Ruby JG, Skewes-Cox P, Fischbach MA, DeRisi JL, Iwatsuki M, Ōmura S, Khosla C.

J Am Chem Soc. 2012 Oct 24;134(42):17797-806. doi: 10.1021/ja308622d. Epub 2012 Oct 10.

PMID:
23030602
[PubMed - indexed for MEDLINE]
Free PMC Article

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