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Items: 1 to 20 of 133

1.

Determination of ubiquitin fitness landscapes under different chemical stresses in a classroom setting.

Mavor D, Barlow K, Thompson S, Barad BA, Bonny AR, Cario CL, Gaskins G, Liu Z, Deming L, Axen SD, Caceres E, Chen W, Cuesta A, Gate RE, Green EM, Hulce KR, Ji W, Kenner LR, Mensa B, Morinishi LS, Moss SM, Mravic M, Muir RK, Niekamp S, Nnadi CI, Palovcak E, Poss EM, Ross TD, Salcedo EC, See SK, Subramaniam M, Wong AW, Li J, Thorn KS, Conchúir SÓ, Roscoe BP, Chow ED, DeRisi JL, Kortemme T, Bolon DN, Fraser JS.

Elife. 2016 Apr 25;5. pii: e15802. doi: 10.7554/eLife.15802.

2.

Identification of Plasmodium falciparum specific translation inhibitors from the MMV Malaria Box using a high throughput in vitro translation screen.

Ahyong V, Sheridan CM, Leon KE, Witchley JN, Diep J, DeRisi JL.

Malar J. 2016 Mar 17;15(1):173. doi: 10.1186/s12936-016-1231-8.

3.

Depletion of Abundant Sequences by Hybridization (DASH): using Cas9 to remove unwanted high-abundance species in sequencing libraries and molecular counting applications.

Gu W, Crawford ED, O'Donovan BD, Wilson MR, Chow ED, Retallack H, DeRisi JL.

Genome Biol. 2016 Mar 4;17:41. doi: 10.1186/s13059-016-0904-5.

4.

Association of NMT2 with the acyl-CoA carrier ACBD6 protects the N-myristoyltransferase reaction from palmitoyl-CoA.

Soupene E, Kao J, Cheng DH, Wang D, Greninger AL, Knudsen GM, DeRisi JL, Kuypers FA.

J Lipid Res. 2016 Feb;57(2):288-98. doi: 10.1194/jlr.M065003. Epub 2015 Nov 30.

PMID:
26621918
5.

Isolation of a Complete Circular Virus Genome Sequence from an Alaskan Black-Capped Chickadee (Poecile atricapillus) Gastrointestinal Tract Sample.

Hanna ZR, Runckel C, Fuchs J, DeRisi JL, Mindell DP, Van Hemert C, Handel CM, Dumbacher JP.

Genome Announc. 2015 Sep 24;3(5). pii: e01081-15. doi: 10.1128/genomeA.01081-15.

6.

Diagnosing Balamuthia mandrillaris Encephalitis With Metagenomic Deep Sequencing.

Wilson MR, Shanbhag NM, Reid MJ, Singhal NS, Gelfand JM, Sample HA, Benkli B, O'Donovan BD, Ali IK, Keating MK, Dunnebacke TH, Wood MD, Bollen A, DeRisi JL.

Ann Neurol. 2015 Nov;78(5):722-30. doi: 10.1002/ana.24499. Epub 2015 Aug 24.

PMID:
26290222
7.

Draft Genome Sequence of Laverivirus UC1, a Dicistrovirus-Like RNA Virus Featuring an Unusual Genome Organization.

Greninger AL, DeRisi JL.

Genome Announc. 2015 Jul 2;3(4). pii: e00656-15. doi: 10.1128/genomeA.00656-15.

8.

Draft Genome Sequence of Tombunodavirus UC1.

Greninger AL, DeRisi JL.

Genome Announc. 2015 Jul 2;3(4). pii: e00655-15. doi: 10.1128/genomeA.00655-15.

9.

Draft Genome Sequence of Picalivirus D Recovered from San Francisco Wastewater.

Greninger AL, DeRisi JL.

Genome Announc. 2015 Jul 2;3(4). pii: e00654-15. doi: 10.1128/genomeA.00654-15.

10.

Draft Genome Sequences of Leviviridae RNA Phages EC and MB Recovered from San Francisco Wastewater.

Greninger AL, DeRisi JL.

Genome Announc. 2015 Jun 25;3(3). pii: e00652-15. doi: 10.1128/genomeA.00652-15.

11.

Draft Genome Sequences of Ciliovirus and Brinovirus from San Francisco Wastewater.

Greninger AL, DeRisi JL.

Genome Announc. 2015 Jun 25;3(3). pii: e00651-15. doi: 10.1128/genomeA.00651-15.

12.

Draft Genome Sequences of Marine RNA Viruses SF-1, SF-2, and SF-3 Recovered from San Francisco Wastewater.

Greninger AL, DeRisi JL.

Genome Announc. 2015 Jun 18;3(3). pii: e00653-15. doi: 10.1128/genomeA.00653-15.

13.

Widespread recombination, reassortment, and transmission of unbalanced compound viral genotypes in natural arenavirus infections.

Stenglein MD, Jacobson ER, Chang LW, Sanders C, Hawkins MG, Guzman DS, Drazenovich T, Dunker F, Kamaka EK, Fisher D, Reavill DR, Meola LF, Levens G, DeRisi JL.

PLoS Pathog. 2015 May 20;11(5):e1004900. doi: 10.1371/journal.ppat.1004900. eCollection 2015 May.

14.

Destructin-1 is a collagen-degrading endopeptidase secreted by Pseudogymnoascus destructans, the causative agent of white-nose syndrome.

O'Donoghue AJ, Knudsen GM, Beekman C, Perry JA, Johnson AD, DeRisi JL, Craik CS, Bennett RJ.

Proc Natl Acad Sci U S A. 2015 Jun 16;112(24):7478-83. doi: 10.1073/pnas.1507082112. Epub 2015 May 5. Erratum in: Proc Natl Acad Sci U S A. 2015 Jun 16;112(24):E3152.

15.

Past, present, and future of arenavirus taxonomy.

Radoshitzky SR, Bào Y, Buchmeier MJ, Charrel RN, Clawson AN, Clegg CS, DeRisi JL, Emonet S, Gonzalez JP, Kuhn JH, Lukashevich IS, Peters CJ, Romanowski V, Salvato MS, Stenglein MD, de la Torre JC.

Arch Virol. 2015 Jul;160(7):1851-74. doi: 10.1007/s00705-015-2418-y.

PMID:
25935216
16.

Correction: Programmable microfluidic synthesis of spectrally encoded microspheres.

Gerver RE, Gómez-Sjöberg R, Baxter BC, Thorn KS, Fordyce PM, Diaz-Botia CA, Helms BA, DeRisi JL.

Lab Chip. 2015 Feb 21;15(4):1213. doi: 10.1039/c5lc90018b.

PMID:
25619960
17.

Genome-wide regulatory dynamics of translation in the Plasmodium falciparum asexual blood stages.

Caro F, Ahyong V, Betegon M, DeRisi JL.

Elife. 2014 Dec 10;3. doi: 10.7554/eLife.04106.

18.

(+)-SJ733, a clinical candidate for malaria that acts through ATP4 to induce rapid host-mediated clearance of Plasmodium.

Jiménez-Díaz MB, Ebert D, Salinas Y, Pradhan A, Lehane AM, Myrand-Lapierre ME, O'Loughlin KG, Shackleford DM, Justino de Almeida M, Carrillo AK, Clark JA, Dennis AS, Diep J, Deng X, Duffy S, Endsley AN, Fedewa G, Guiguemde WA, Gómez MG, Holbrook G, Horst J, Kim CC, Liu J, Lee MC, Matheny A, Martínez MS, Miller G, Rodríguez-Alejandre A, Sanz L, Sigal M, Spillman NJ, Stein PD, Wang Z, Zhu F, Waterson D, Knapp S, Shelat A, Avery VM, Fidock DA, Gamo FJ, Charman SA, Mirsalis JC, Ma H, Ferrer S, Kirk K, Angulo-Barturen I, Kyle DE, DeRisi JL, Floyd DM, Guy RK.

Proc Natl Acad Sci U S A. 2014 Dec 16;111(50):E5455-62. doi: 10.1073/pnas.1414221111. Epub 2014 Dec 1. Erratum in: Proc Natl Acad Sci U S A. 2015 Oct 20;112(42):E5764.

19.

Taxonomic reorganization of the family Bornaviridae.

Kuhn JH, Dürrwald R, Bào Y, Briese T, Carbone K, Clawson AN, deRisi JL, Garten W, Jahrling PB, Kolodziejek J, Rubbenstroth D, Schwemmle M, Stenglein M, Tomonaga K, Weissenböck H, Nowotny N.

Arch Virol. 2015 Feb;160(2):621-32. doi: 10.1007/s00705-014-2276-z. Epub 2014 Dec 2.

20.

A chemical rescue screen identifies a Plasmodium falciparum apicoplast inhibitor targeting MEP isoprenoid precursor biosynthesis.

Wu W, Herrera Z, Ebert D, Baska K, Cho SH, DeRisi JL, Yeh E.

Antimicrob Agents Chemother. 2015 Jan;59(1):356-64. doi: 10.1128/AAC.03342-14. Epub 2014 Nov 3.

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