Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 45

1.

Reductive genome evolution at both ends of the bacterial population size spectrum.

Batut B, Knibbe C, Marais G, Daubin V.

Nat Rev Microbiol. 2014 Sep 15. doi: 10.1038/nrmicro3331. [Epub ahead of print]

PMID:
25220308
[PubMed - as supplied by publisher]
2.

The phylogeny of actinobacteria revisited in the light of complete genomes, the orders Frankiales and Micrococcales should be split into coherent entities. Proposal of Frankiales ord. nov., Geodermatophilales ord. nov., Acidothermales ord. nov. and Nakamurellales ord. nov.

Sen A, Daubin V, Abrouk D, Gifford I, Berry AM, Normand P.

Int J Syst Evol Microbiol. 2014 Aug 28. pii: ijs.0.063966-0. doi: 10.1099/ijs.0.063966-0. [Epub ahead of print]

PMID:
25168610
[PubMed - as supplied by publisher]
3.

The inference of gene trees with species trees.

Szöllősi GJ, Tannier E, Daubin V, Boussau B.

Syst Biol. 2014 Jul 28. pii: syu048. [Epub ahead of print]

PMID:
25070970
[PubMed - as supplied by publisher]
4.

Ribosomal proteins: toward a next generation standard for prokaryotic systematics?

Ramulu HG, Groussin M, Talla E, Planel R, Daubin V, Brochier-Armanet C.

Mol Phylogenet Evol. 2014 Jun;75:103-17. doi: 10.1016/j.ympev.2014.02.013. Epub 2014 Feb 28.

PMID:
24583288
[PubMed - indexed for MEDLINE]
5.

Lateral gene transfer, rearrangement, reconciliation.

Patterson M, Szöllősi G, Daubin V, Tannier E.

BMC Bioinformatics. 2013;14 Suppl 15:S4. doi: 10.1186/1471-2105-14-S15-S4. Epub 2013 Oct 15.

PMID:
24564205
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A Bayesian method for analyzing lateral gene transfer.

Sjöstrand J, Tofigh A, Daubin V, Arvestad L, Sennblad B, Lagergren J.

Syst Biol. 2014 May;63(3):409-20. doi: 10.1093/sysbio/syu007. Epub 2014 Feb 20.

PMID:
24562812
[PubMed - indexed for MEDLINE]
7.

Single acquisition of protelomerase gave rise to speciation of a large and diverse clade within the Agrobacterium/Rhizobium supercluster characterized by the presence of a linear chromid.

Ramírez-Bahena MH, Vial L, Lassalle F, Diel B, Chapulliot D, Daubin V, Nesme X, Muller D.

Mol Phylogenet Evol. 2014 Apr;73:202-7. doi: 10.1016/j.ympev.2014.01.005. Epub 2014 Jan 17.

PMID:
24440816
[PubMed - indexed for MEDLINE]
8.

Efficient exploration of the space of reconciled gene trees.

Szöllõsi GJ, Rosikiewicz W, Boussau B, Tannier E, Daubin V.

Syst Biol. 2013 Nov;62(6):901-12. doi: 10.1093/sysbio/syt054. Epub 2013 Aug 6.

PMID:
23925510
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Contrasted evolutionary constraints on secreted and non-secreted proteomes of selected Actinobacteria.

Thakur S, Normand P, Daubin V, Tisa LS, Sen A.

BMC Genomics. 2013 Jul 13;14:474. doi: 10.1186/1471-2164-14-474.

PMID:
23848577
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

TPMS: a set of utilities for querying collections of gene trees.

Bigot T, Daubin V, Lassalle F, Perrière G.

BMC Bioinformatics. 2013 Mar 27;14:109. doi: 10.1186/1471-2105-14-109.

PMID:
23530580
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Lateral gene transfer from the dead.

Szöllosi GJ, Tannier E, Lartillot N, Daubin V.

Syst Biol. 2013 May 1;62(3):386-97. doi: 10.1093/sysbio/syt003. Epub 2013 Jan 25.

PMID:
23355531
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genome-scale coestimation of species and gene trees.

Boussau B, Szöllosi GJ, Duret L, Gouy M, Tannier E, Daubin V.

Genome Res. 2013 Feb;23(2):323-30. doi: 10.1101/gr.141978.112. Epub 2012 Nov 6.

PMID:
23132911
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations.

Szöllosi GJ, Boussau B, Abby SS, Tannier E, Daubin V.

Proc Natl Acad Sci U S A. 2012 Oct 23;109(43):17513-8. doi: 10.1073/pnas.1202997109. Epub 2012 Oct 4.

PMID:
23043116
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Evolution of gene neighborhoods within reconciled phylogenies.

Bérard S, Gallien C, Boussau B, Szöllősi GJ, Daubin V, Tannier E.

Bioinformatics. 2012 Sep 15;28(18):i382-i388. doi: 10.1093/bioinformatics/bts374.

PMID:
22962456
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

[Healing the tree of life with lateral gene transfers].

Daubin V, Abby S.

Med Sci (Paris). 2012 Aug-Sep;28(8-9):695-8. doi: 10.1051/medsci/2012288007. Epub 2012 Aug 22. French. No abstract available.

PMID:
22920867
[PubMed - indexed for MEDLINE]
16.

Lateral gene transfer as a support for the tree of life.

Abby SS, Tannier E, Gouy M, Daubin V.

Proc Natl Acad Sci U S A. 2012 Mar 27;109(13):4962-7. doi: 10.1073/pnas.1116871109. Epub 2012 Mar 13.

PMID:
22416123
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Modeling gene family evolution and reconciling phylogenetic discord.

Szöllosi GJ, Daubin V.

Methods Mol Biol. 2012;856:29-51. doi: 10.1007/978-1-61779-585-5_2.

PMID:
22399454
[PubMed - indexed for MEDLINE]
18.

High-quality sequence clustering guided by network topology and multiple alignment likelihood.

Miele V, Penel S, Daubin V, Picard F, Kahn D, Duret L.

Bioinformatics. 2012 Apr 15;28(8):1078-85. doi: 10.1093/bioinformatics/bts098. Epub 2012 Feb 25.

PMID:
22368255
[PubMed - indexed for MEDLINE]
Free Article
19.

Models, algorithms and programs for phylogeny reconciliation.

Doyon JP, Ranwez V, Daubin V, Berry V.

Brief Bioinform. 2011 Sep;12(5):392-400. doi: 10.1093/bib/bbr045. Review.

PMID:
21949266
[PubMed - indexed for MEDLINE]
Free Article
20.

Multiple nuclear gene phylogenetic analysis of the evolution of dioecy and sex chromosomes in the genus Silene.

Marais GA, Forrest A, Kamau E, Käfer J, Daubin V, Charlesworth D.

PLoS One. 2011;6(8):e21915. doi: 10.1371/journal.pone.0021915. Epub 2011 Aug 10.

PMID:
21853022
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Loading ...
Write to the Help Desk