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Results: 9

1.

A comparative phenotypic and genomic analysis of C57BL/6J and C57BL/6N mouse strains.

Simon MM, Greenaway S, White JK, Fuchs H, Gailus-Durner V, Wells S, Sorg T, Wong K, Bedu E, Cartwright EJ, Dacquin R, Djebali S, Estabel J, Graw J, Ingham NJ, Jackson IJ, Lengeling A, Mandillo S, Marvel J, Meziane H, Preitner F, Puk O, Roux M, Adams DJ, Atkins S, Ayadi A, Becker L, Blake A, Brooker D, Cater H, Champy MF, Combe R, Danecek P, di Fenza A, Gates H, Gerdin AK, Golini E, Hancock JM, Hans W, Hölter SM, Hough T, Jurdic P, Keane TM, Morgan H, Müller W, Neff F, Nicholson G, Pasche B, Roberson LA, Rozman J, Sanderson M, Santos L, Selloum M, Shannon C, Southwell A, Tocchini-Valentini GP, Vancollie VE, Westerberg H, Wurst W, Zi M, Yalcin B, Ramirez-Solis R, Steel KP, Mallon AM, de Angelis MH, Herault Y, Brown SD.

Genome Biol. 2013 Jul 31;14(7):R82. doi: 10.1186/gb-2013-14-7-r82.

PMID:
23902802
[PubMed - in process]
Free PMC Article
2.

High levels of RNA-editing site conservation amongst 15 laboratory mouse strains.

Danecek P, Nellåker C, McIntyre RE, Buendia-Buendia JE, Bumpstead S, Ponting CP, Flint J, Durbin R, Keane TM, Adams DJ.

Genome Biol. 2012 Apr 23;13(4):26. doi: 10.1186/gb-2012-13-4-r26.

PMID:
22524474
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Mouse genomic variation and its effect on phenotypes and gene regulation.

Keane TM, Goodstadt L, Danecek P, White MA, Wong K, Yalcin B, Heger A, Agam A, Slater G, Goodson M, Furlotte NA, Eskin E, Nellåker C, Whitley H, Cleak J, Janowitz D, Hernandez-Pliego P, Edwards A, Belgard TG, Oliver PL, McIntyre RE, Bhomra A, Nicod J, Gan X, Yuan W, van der Weyden L, Steward CA, Bala S, Stalker J, Mott R, Durbin R, Jackson IJ, Czechanski A, Guerra-Assunção JA, Donahue LR, Reinholdt LG, Payseur BA, Ponting CP, Birney E, Flint J, Adams DJ.

Nature. 2011 Sep 14;477(7364):289-94. doi: 10.1038/nature10413.

PMID:
21921910
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The variant call format and VCFtools.

Danecek P, Auton A, Abecasis G, Albers CA, Banks E, DePristo MA, Handsaker RE, Lunter G, Marth GT, Sherry ST, McVean G, Durbin R; 1000 Genomes Project Analysis Group.

Bioinformatics. 2011 Aug 1;27(15):2156-8. doi: 10.1093/bioinformatics/btr330. Epub 2011 Jun 7.

PMID:
21653522
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Flavitrack analysis of the structure and function of West Nile non-structural proteins.

Danecek P, Schein CH.

Int J Bioinform Res Appl. 2010;6(2):134-46.

PMID:
20223736
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

PCP consensus sequences of flaviviruses: correlating variance with vector competence and disease phenotype.

Danecek P, Lu W, Schein CH.

J Mol Biol. 2010 Feb 26;396(3):550-63. doi: 10.1016/j.jmb.2009.11.070. Epub 2009 Dec 4.

PMID:
19969003
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Comparison of quantitative conformer analyses by nuclear magnetic resonance and Raman optical activity spectra for model dipeptides.

Budesínský M, Danecek P, Bednárová L, Kapitán J, Baumruk V, Bour P.

J Phys Chem A. 2008 Sep 18;112(37):8633-40. doi: 10.1021/jp806181q. Epub 2008 Aug 27.

PMID:
18729424
[PubMed - indexed for MEDLINE]
8.

Anharmonic effects in IR, Raman, and Raman optical activity spectra of alanine and proline zwitterions.

Danecek P, Kapitán J, Baumruk V, Bednárová L, Kopecký V Jr, Bour P.

J Chem Phys. 2007 Jun 14;126(22):224513.

PMID:
17581069
[PubMed - indexed for MEDLINE]
9.

Comparison of the numerical stability of methods for anharmonic calculations of vibrational molecular energies.

Danecek P, Bour P.

J Comput Chem. 2007 Jul 30;28(10):1617-24.

PMID:
17340607
[PubMed - indexed for MEDLINE]

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