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Results: 1 to 20 of 178

1.

A comparative analysis of the bistability switch for platelet aggregation by logic ODE based dynamical modeling.

Mischnik M, Gambaryan S, Subramanian H, Geiger J, Schütz C, Timmer J, Dandekar T.

Mol Biosyst. 2014 Jul 1;10(8):2082-9. doi: 10.1039/c4mb00170b.

PMID:
24852796
[PubMed - in process]
2.

Functional module search in protein networks based on semantic similarity improves the analysis of proteomics data.

Boyanova D, Nilla S, Klau GW, Dandekar T, Mueller T, Dittrich M.

Mol Cell Proteomics. 2014 May 7. [Epub ahead of print]

PMID:
24807868
[PubMed - as supplied by publisher]
Free Article
3.

Cytokinins for immunity beyond growth, galls and green islands.

Naseem M, Wölfling M, Dandekar T.

Trends Plant Sci. 2014 May 1. pii: S1360-1385(14)00090-9. doi: 10.1016/j.tplants.2014.04.001. [Epub ahead of print]

PMID:
24794463
[PubMed - as supplied by publisher]
4.

Perforin-like protein PPLP2 permeabilizes the red blood cell membrane during egress of Plasmodium falciparum gametocytes.

Wirth CC, Glushakova S, Scheuermayer M, Repnik U, Garg S, Schaack D, Kachman MM, Weißbach T, Zimmerberg J, Dandekar T, Griffiths G, Chitnis CE, Singh S, Fischer R, Pradel G.

Cell Microbiol. 2014 May;16(5):709-33. doi: 10.1111/cmi.12288. Epub 2014 Apr 4.

PMID:
24602217
[PubMed - in process]
5.

Probing the unknowns in cytokinin-mediated immune defense in Arabidopsis with systems biology approaches.

Naseem M, Kunz M, Dandekar T.

Bioinform Biol Insights. 2014 Feb 13;8:35-44. doi: 10.4137/BBI.S13462.. eCollection 2014.

PMID:
24558299
[PubMed]
Free PMC Article
6.

Quantitative single-molecule localization microscopy combined with rule-based modeling reveals ligand-induced TNF-R1 reorganization toward higher-order oligomers.

Fricke F, Malkusch S, Wangorsch G, Greiner JF, Kaltschmidt B, Kaltschmidt C, Widera D, Dandekar T, Heilemann M.

Histochem Cell Biol. 2014 Jul;142(1):91-101. doi: 10.1007/s00418-014-1195-0. Epub 2014 Feb 12.

PMID:
24519400
[PubMed - in process]
7.

The impact of cytokinin on jasmonate-salicylate antagonism in Arabidopsis immunity against infection with Pst DC3000.

Naseem M, Kaltdorf M, Hussain A, Dandekar T.

Plant Signal Behav. 2013 Oct;8(10):doi: 10.4161/psb.26791.

PMID:
24494231
[PubMed - in process]
8.

Host insulin stimulates Echinococcus multilocularis insulin signalling pathways and larval development.

Hemer S, Konrad C, Spiliotis M, Koziol U, Schaack D, Förster S, Gelmedin V, Stadelmann B, Dandekar T, Hemphill A, Brehm K.

BMC Biol. 2014 Jan 27;12:5. doi: 10.1186/1741-7007-12-5.

PMID:
24468049
[PubMed - in process]
Free PMC Article
9.

Establishment of a human 3D lung cancer model based on a biological tissue matrix combined with a Boolean in silico model.

Stratmann AT, Fecher D, Wangorsch G, Göttlich C, Walles T, Walles H, Dandekar T, Dandekar G, Nietzer SL.

Mol Oncol. 2014 Mar;8(2):351-65. doi: 10.1016/j.molonc.2013.11.009. Epub 2013 Dec 18.

PMID:
24388494
[PubMed - in process]
10.

Exogenous administration of a recombinant variant of TWEAK impairs healing after myocardial infarction by aggravation of inflammation.

Pachel C, Mathes D, Bayer B, Dienesch C, Wangorsch G, Heitzmann W, Lang I, Ardehali H, Ertl G, Dandekar T, Wajant H, Frantz S.

PLoS One. 2013 Nov 11;8(11):e78938. doi: 10.1371/journal.pone.0078938. eCollection 2013.

PMID:
24244389
[PubMed - in process]
Free PMC Article
11.

The impact of cytokinin on jasmonate-salicylate antagonism in Arabidopsis immunity against infection with Pst DC3000.

Naseem M, Kaltdorf M, Hussain A, Dandekar T.

Plant Signal Behav. 2013 Oct 29;9(1). pii: e26791. [Epub ahead of print]

PMID:
24168819
[PubMed - as supplied by publisher]
12.

Jimena: efficient computing and system state identification for genetic regulatory networks.

Karl S, Dandekar T.

BMC Bioinformatics. 2013 Oct 11;14:306. doi: 10.1186/1471-2105-14-306.

PMID:
24118878
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Wall teichoic acid structure governs horizontal gene transfer between major bacterial pathogens.

Winstel V, Liang C, Sanchez-Carballo P, Steglich M, Munar M, Bröker BM, Penadés JR, Nübel U, Holst O, Dandekar T, Peschel A, Xia G.

Nat Commun. 2013;4:2345. doi: 10.1038/ncomms3345.

PMID:
23965785
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A semi-quantitative model of Quorum-Sensing in Staphylococcus aureus, approved by microarray meta-analyses and tested by mutation studies.

Audretsch C, Lopez D, Srivastava M, Wolz C, Dandekar T.

Mol Biosyst. 2013 Nov;9(11):2665-80. doi: 10.1039/c3mb70117d.

PMID:
23959234
[PubMed - indexed for MEDLINE]
15.

Dynamical modelling of prostaglandin signalling in platelets reveals individual receptor contributions and feedback properties.

Mischnik M, Hubertus K, Geiger J, Dandekar T, Timmer J.

Mol Biosyst. 2013 Oct;9(10):2520-9. doi: 10.1039/c3mb70142e.

PMID:
23903629
[PubMed - indexed for MEDLINE]
16.

Software LS-MIDA for efficient mass isotopomer distribution analysis in metabolic modelling.

Ahmed Z, Zeeshan S, Huber C, Hensel M, Schomburg D, Münch R, Eisenreich W, Dandekar T.

BMC Bioinformatics. 2013 Jul 9;14:218. doi: 10.1186/1471-2105-14-218.

PMID:
23837681
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

GoSynthetic database tool to analyse natural and engineered molecular processes.

Liang C, Krüger B, Dandekar T.

Database (Oxford). 2013 Jun 27;2013:bat043. doi: 10.1093/database/bat043. Print 2013.

PMID:
23813641
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

PlanktoVision--an automated analysis system for the identification of phytoplankton.

Schulze K, Tillich UM, Dandekar T, Frohme M.

BMC Bioinformatics. 2013 Mar 27;14:115. doi: 10.1186/1471-2105-14-115.

PMID:
23537512
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A Boolean view separates platelet activatory and inhibitory signalling as verified by phosphorylation monitoring including threshold behaviour and integrin modulation.

Mischnik M, Boyanova D, Hubertus K, Geiger J, Philippi N, Dittrich M, Wangorsch G, Timmer J, Dandekar T.

Mol Biosyst. 2013 Jun;9(6):1326-39. doi: 10.1039/c3mb25597b. Epub 2013 Mar 6.

PMID:
23463387
[PubMed - indexed for MEDLINE]
20.

Analysing molecular polar surface descriptors to predict blood-brain barrier permeation.

Shityakov S, Neuhaus W, Dandekar T, Förster C.

Int J Comput Biol Drug Des. 2013;6(1-2):146-56. doi: 10.1504/IJCBDD.2013.052195. Epub 2013 Feb 21.

PMID:
23428480
[PubMed - indexed for MEDLINE]

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