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Items: 1 to 20 of 209


An antibiotic target ranking and prioritization pipeline combining sequence, structure and network-based approaches exemplified for Serratia marcescens.

Gupta SK, Gross R, Dandekar T.

Gene. 2016 Jul 14. pii: S0378-1119(16)30556-X. doi: 10.1016/j.gene.2016.07.030. [Epub ahead of print]


Systematic Identification of Anti-Fungal Drug Targets by a Metabolic Network Approach.

Kaltdorf M, Srivastava M, Gupta SK, Liang C, Binder J, Dietl AM, Meir Z, Haas H, Osherov N, Krappmann S, Dandekar T.

Front Mol Biosci. 2016 Jun 17;3:22. doi: 10.3389/fmolb.2016.00022. eCollection 2016.


Analyzing ERK 1/2 signalling and targets.

Brietz A, Schuch KV, Wangorsch G, Lorenz K, Dandekar T.

Mol Biosyst. 2016 Jul 19;12(8):2436-46. doi: 10.1039/c6mb00255b.


A Combined 3D Tissue Engineered In Vitro/In Silico Lung Tumor Model for Predicting Drug Effectiveness in Specific Mutational Backgrounds.

Göttlich C, Müller LC, Kunz M, Schmitt F, Walles H, Walles T, Dandekar T, Dandekar G, Nietzer SL.

J Vis Exp. 2016 Apr 6;(110). doi: 10.3791/53885.


The drug-minded protein interaction database (DrumPID) for efficient target analysis and drug development.

Kunz M, Liang C, Nilla S, Cecil A, Dandekar T.

Database (Oxford). 2016 Apr 7;2016. pii: baw041. doi: 10.1093/database/baw041. Print 2016.


Long noncoding RNA Chast promotes cardiac remodeling.

Viereck J, Kumarswamy R, Foinquinos A, Xiao K, Avramopoulos P, Kunz M, Dittrich M, Maetzig T, Zimmer K, Remke J, Just A, Fendrich J, Scherf K, Bolesani E, Schambach A, Weidemann F, Zweigerdt R, de Windt LJ, Engelhardt S, Dandekar T, Batkai S, Thum T.

Sci Transl Med. 2016 Feb 17;8(326):326ra22. doi: 10.1126/scitranslmed.aaf1475.


Revisiting adult neurogenesis and the role of erythropoietin for neuronal and oligodendroglial differentiation in the hippocampus.

Hassouna I, Ott C, Wüstefeld L, Offen N, Neher RA, Mitkovski M, Winkler D, Sperling S, Fries L, Goebbels S, Vreja IC, Hagemeyer N, Dittrich M, Rossetti MF, Kröhnert K, Hannke K, Boretius S, Zeug A, Höschen C, Dandekar T, Dere E, Neher E, Rizzoli SO, Nave KA, Sirén AL, Ehrenreich H.

Mol Psychiatry. 2016 Jan 26. doi: 10.1038/mp.2015.212. [Epub ahead of print]


LONELY-GUY Knocks Every Door: Crosskingdom Microbial Pathogenesis.

Naseem M, Sarukhanyan E, Dandekar T.

Trends Plant Sci. 2015 Dec;20(12):781-3.


Gene expression profiles and protein-protein interaction network analysis in AIDS patients with HIV-associated encephalitis and dementia.

Shityakov S, Dandekar T, Förster C.

HIV AIDS (Auckl). 2015 Nov 18;7:265-76. doi: 10.2147/HIV.S88438. eCollection 2015.


Draft Genome Sequence of the Moderately Heat-Tolerant Lactococcus lactis subsp. lactis bv. diacetylactis Strain GL2 from Algerian Dromedary Milk.

Gabed N, Yang M, Bey Baba Hamed M, Drici H, Gross R, Dandekar T, Liang C.

Genome Announc. 2015 Nov 19;3(6). pii: e01334-15. doi: 10.1128/genomeA.01334-15.


Development of Long Noncoding RNA-Based Strategies to Modulate Tissue Vascularization.

Fiedler J, Breckwoldt K, Remmele CW, Hartmann D, Dittrich M, Pfanne A, Just A, Xiao K, Kunz M, Müller T, Hansen A, Geffers R, Dandekar T, Eschenhagen T, Thum T.

J Am Coll Cardiol. 2015 Nov 3;66(18):2005-15. doi: 10.1016/j.jacc.2015.07.081.


Integrated inference and evaluation of host-fungi interaction networks.

Remmele CW, Luther CH, Balkenhol J, Dandekar T, Müller T, Dittrich MT.

Front Microbiol. 2015 Aug 4;6:764. doi: 10.3389/fmicb.2015.00764. eCollection 2015.


Scrutinizing the immune defence inventory of Camponotus floridanus applying total transcriptome sequencing.

Gupta SK, Kupper M, Ratzka C, Feldhaar H, Vilcinskas A, Gross R, Dandekar T, Förster F.

BMC Genomics. 2015 Jul 22;16:540. doi: 10.1186/s12864-015-1748-1.


Host-pathogen interactions between the human innate immune system and Candida albicans-understanding and modeling defense and evasion strategies.

Dühring S, Germerodt S, Skerka C, Zipfel PF, Dandekar T, Schuster S.

Front Microbiol. 2015 Jun 30;6:625. doi: 10.3389/fmicb.2015.00625. eCollection 2015. Review.


DNAseq Workflow in a Diagnostic Context and an Example of a User Friendly Implementation.

Wolf B, Kuonen P, Dandekar T, Atlan D.

Biomed Res Int. 2015;2015:403497. doi: 10.1155/2015/403497. Epub 2015 Jun 7.


The nexus between growth and defence signalling: auxin and cytokinin modulate plant immune response pathways.

Naseem M, Kaltdorf M, Dandekar T.

J Exp Bot. 2015 Aug;66(16):4885-96. doi: 10.1093/jxb/erv297. Epub 2015 Jun 24. Review.


Convergence behaviour and Control in Non-Linear Biological Networks.

Karl S, Dandekar T.

Sci Rep. 2015 Jun 11;5:9746. doi: 10.1038/srep09746.


Diagnostic value of preoperative CT scan to stratify colon cancer for neoadjuvant therapy.

Wiegering A, Kunz M, Hussein M, Klein I, Wiegering V, Uthe FW, Dietz UA, Jurowich C, Bley T, Dandekar T, Germer CT, Ritter C.

Int J Colorectal Dis. 2015 Aug;30(8):1067-73. doi: 10.1007/s00384-015-2265-z. Epub 2015 May 22.


Host-adapted metabolism and its regulation in bacterial pathogens.

Dandekar T, Eisenreich W.

Front Cell Infect Microbiol. 2015 Mar 27;5:28. doi: 10.3389/fcimb.2015.00028. eCollection 2015. No abstract available.


Salmonella-how a metabolic generalist adopts an intracellular lifestyle during infection.

Dandekar T, Fieselmann A, Fischer E, Popp J, Hensel M, Noster J.

Front Cell Infect Microbiol. 2015 Jan 29;4:191. doi: 10.3389/fcimb.2014.00191. eCollection 2014. Review.

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