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Draft Genome Sequence of the Moderately Heat-Tolerant Lactococcus lactis subsp. lactis bv. diacetylactis Strain GL2 from Algerian Dromedary Milk.

Gabed N, Yang M, Bey Baba Hamed M, Drici H, Gross R, Dandekar T, Liang C.

Genome Announc. 2015 Nov 19;3(6). pii: e01334-15. doi: 10.1128/genomeA.01334-15.


Development of Long Noncoding RNA-Based Strategies to Modulate Tissue Vascularization.

Fiedler J, Breckwoldt K, Remmele CW, Hartmann D, Dittrich M, Pfanne A, Just A, Xiao K, Kunz M, Müller T, Hansen A, Geffers R, Dandekar T, Eschenhagen T, Thum T.

J Am Coll Cardiol. 2015 Nov 3;66(18):2005-15. doi: 10.1016/j.jacc.2015.07.081.


Integrated inference and evaluation of host-fungi interaction networks.

Remmele CW, Luther CH, Balkenhol J, Dandekar T, Müller T, Dittrich MT.

Front Microbiol. 2015 Aug 4;6:764. doi: 10.3389/fmicb.2015.00764. eCollection 2015.


Scrutinizing the immune defence inventory of Camponotus floridanus applying total transcriptome sequencing.

Gupta SK, Kupper M, Ratzka C, Feldhaar H, Vilcinskas A, Gross R, Dandekar T, Förster F.

BMC Genomics. 2015 Jul 22;16:540. doi: 10.1186/s12864-015-1748-1.


Host-pathogen interactions between the human innate immune system and Candida albicans-understanding and modeling defense and evasion strategies.

Dühring S, Germerodt S, Skerka C, Zipfel PF, Dandekar T, Schuster S.

Front Microbiol. 2015 Jun 30;6:625. doi: 10.3389/fmicb.2015.00625. eCollection 2015. Review.


DNAseq Workflow in a Diagnostic Context and an Example of a User Friendly Implementation.

Wolf B, Kuonen P, Dandekar T, Atlan D.

Biomed Res Int. 2015;2015:403497. doi: 10.1155/2015/403497. Epub 2015 Jun 7.


The nexus between growth and defence signalling: auxin and cytokinin modulate plant immune response pathways.

Naseem M, Kaltdorf M, Dandekar T.

J Exp Bot. 2015 Aug;66(16):4885-96. doi: 10.1093/jxb/erv297. Epub 2015 Jun 24. Review.


Convergence behaviour and Control in Non-Linear Biological Networks.

Karl S, Dandekar T.

Sci Rep. 2015 Jun 11;5:9746. doi: 10.1038/srep09746.


Diagnostic value of preoperative CT scan to stratify colon cancer for neoadjuvant therapy.

Wiegering A, Kunz M, Hussein M, Klein I, Wiegering V, Uthe FW, Dietz UA, Jurowich C, Bley T, Dandekar T, Germer CT, Ritter C.

Int J Colorectal Dis. 2015 Aug;30(8):1067-73. doi: 10.1007/s00384-015-2265-z. Epub 2015 May 22.


Host-adapted metabolism and its regulation in bacterial pathogens.

Dandekar T, Eisenreich W.

Front Cell Infect Microbiol. 2015 Mar 27;5:28. doi: 10.3389/fcimb.2015.00028. eCollection 2015. No abstract available.


Salmonella-how a metabolic generalist adopts an intracellular lifestyle during infection.

Dandekar T, Fieselmann A, Fischer E, Popp J, Hensel M, Noster J.

Front Cell Infect Microbiol. 2015 Jan 29;4:191. doi: 10.3389/fcimb.2014.00191. eCollection 2014. Review.


Modelling antibiotic and cytotoxic isoquinoline effects in Staphylococcus aureus, Staphylococcus epidermidis and mammalian cells.

Cecil A, Ohlsen K, Menzel T, François P, Schrenzel J, Fischer A, Dörries K, Selle M, Lalk M, Hantzschmann J, Dittrich M, Liang C, Bernhardt J, Ölschläger TA, Bringmann G, Bruhn H, Unger M, Ponte-Sucre A, Lehmann L, Dandekar T.

Int J Med Microbiol. 2015 Jan;305(1):96-109. doi: 10.1016/j.ijmm.2014.11.006. Epub 2014 Nov 27.


Bioinformatics of cardiovascular miRNA biology.

Kunz M, Xiao K, Liang C, Viereck J, Pachel C, Frantz S, Thum T, Dandekar T.

J Mol Cell Cardiol. 2014 Dec 5. pii: S0022-2828(14)00387-3. doi: 10.1016/j.yjmcc.2014.11.027. [Epub ahead of print] Review.


Antigen profiling analysis of vaccinia virus injected canine tumors: oncolytic virus efficiency predicted by boolean models.

Cecil A, Gentschev I, Adelfinger M, Nolte I, Dandekar T, Szalay AA.

Bioengineered. 2014 Sep-Oct;5(5):319-25. doi: 10.4161/bioe.32227.


Lipid-Pro: a computational lipid identification solution for untargeted lipidomics on data-independent acquisition tandem mass spectrometry platforms.

Ahmed Z, Mayr M, Zeeshan S, Dandekar T, Mueller MJ, Fekete A.

Bioinformatics. 2015 Apr 1;31(7):1150-3. doi: 10.1093/bioinformatics/btu796. Epub 2014 Nov 29.


Stem-cell-triggered immunity safeguards cytokinin enriched plant shoot apexes from pathogen infection.

Naseem M, Srivastava M, Dandekar T.

Front Plant Sci. 2014 Oct 30;5:588. doi: 10.3389/fpls.2014.00588. eCollection 2014.


Developing sustainable software solutions for bioinformatics by the " Butterfly" paradigm.

Ahmed Z, Zeeshan S, Dandekar T.

Version 2. F1000Res. 2014 Mar 13 [revised 2014 Aug 1];3:71. doi: 10.12688/f1000research.3681.2. eCollection 2014.


'Isotopo' a database application for facile analysis and management of mass isotopomer data.

Ahmed Z, Zeeshan S, Huber C, Hensel M, Schomburg D, Münch R, Eylert E, Eisenreich W, Dandekar T.

Database (Oxford). 2014 Sep 9;2014. pii: bau077. doi: 10.1093/database/bau077. Print 2014.


Inhibition of the SR protein-phosphorylating CLK kinases of Plasmodium falciparum impairs blood stage replication and malaria transmission.

Kern S, Agarwal S, Huber K, Gehring AP, Strödke B, Wirth CC, Brügl T, Abodo LO, Dandekar T, Doerig C, Fischer R, Tobin AB, Alam MM, Bracher F, Pradel G.

PLoS One. 2014 Sep 4;9(9):e105732. doi: 10.1371/journal.pone.0105732. eCollection 2014.

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