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Results: 1 to 20 of 43

1.

A halotyrosine antibody that detects increased protein modifications in asthma patients.

Jin H, Hallstrand TS, Daly DS, Matzke MM, Nair P, Bigelow DJ, Pounds JG, Zangar RC.

J Immunol Methods. 2014 Jan 31;403(1-2):17-25. doi: 10.1016/j.jim.2013.11.013. Epub 2013 Dec 2.

PMID:
24295867
[PubMed - indexed for MEDLINE]
2.

Oxidatively modified proteins as plasma biomarkers in breast cancer.

Jin H, Daly DS, Marks JR, Zangar RC.

Cancer Biomark. 2013;13(3):193-200. doi: 10.3233/CBM-130349.

PMID:
23912491
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Plasma biomarker profiles differ depending on breast cancer subtype but RANTES is consistently increased.

Gonzalez RM, Daly DS, Tan R, Marks JR, Zangar RC.

Cancer Epidemiol Biomarkers Prev. 2011 Jul;20(7):1543-51. doi: 10.1158/1055-9965.EPI-10-1248. Epub 2011 May 17.

PMID:
21586622
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Analysis of high-throughput ELISA microarray data.

White AM, Daly DS, Zangar RC.

Methods Mol Biol. 2011;694:191-211. doi: 10.1007/978-1-60761-977-2_13.

PMID:
21082436
[PubMed - indexed for MEDLINE]
5.

An internal calibration method for protein-array studies.

Daly DS, Anderson KK, Seurynck-Servoss SL, Gonzalez RM, White AM, Zangar RC.

Stat Appl Genet Mol Biol. 2010;9:Article 14. doi: 10.2202/1544-6115.1506. Epub 2010 Jan 27.

PMID:
20196749
[PubMed - indexed for MEDLINE]
6.

An analysis pipeline for the inference of protein-protein interaction networks.

Taylor RC, Singhal M, Daly DS, Gilmore J, Cannon WR, Domico K, White AM, Auberry DL, Auberry KJ, Hooker BS, Hurst G, McDermott JE, McDonald WH, Pelletier DA, Schmoyer D, Wiley HS.

Int J Data Min Bioinform. 2009;3(4):409-30.

PMID:
20052905
[PubMed - indexed for MEDLINE]
7.

ProMAT calibrator: A tool for reducing experimental bias in antibody microarrays.

Zangar RC, Daly DS, White AM, Servoss SL, Tan RM, Collett JR.

J Proteome Res. 2009 Aug;8(8):3937-43. doi: 10.1021/pr900247n.

PMID:
19618941
[PubMed - indexed for MEDLINE]
8.

ELISA-BASE: an integrated bioinformatics tool for analyzing and tracking ELISA microarray data.

White AM, Collett JR, Seurynck-Servoss SL, Daly DS, Zangar RC.

Bioinformatics. 2009 Jun 15;25(12):1566-7. doi: 10.1093/bioinformatics/btp182. Epub 2009 Apr 3.

PMID:
19346326
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Platelet proteome changes associated with diabetes and during platelet storage for transfusion.

Springer DL, Miller JH, Spinelli SL, Pasa-Tolic L, Purvine SO, Daly DS, Zangar RC, Jin S, Blumberg N, Francis CW, Taubman MB, Casey AE, Wittlin SD, Phipps RP.

J Proteome Res. 2009 May;8(5):2261-72. doi: 10.1021/pr800885j.

PMID:
19267493
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Predicting protein concentrations with ELISA microarray assays, monotonic splines and Monte Carlo simulation.

Daly DS, Anderson KK, White AM, Gonzalez RM, Varnum SM, Zangar RC.

Stat Appl Genet Mol Biol. 2008;7(1):Article21. doi: 10.2202/1544-6115.1364. Epub 2008 Jul 14.

PMID:
18673290
[PubMed - indexed for MEDLINE]
11.

A general system for studying protein-protein interactions in Gram-negative bacteria.

Pelletier DA, Hurst GB, Foote LJ, Lankford PK, McKeown CK, Lu TY, Schmoyer DD, Shah MB, Hervey WJ 4th, McDonald WH, Hooker BS, Cannon WR, Daly DS, Gilmore JM, Wiley HS, Auberry DL, Wang Y, Larimer FW, Kennel SJ, Doktycz MJ, Morrell-Falvey JL, Owens ET, Buchanan MV.

J Proteome Res. 2008 Aug;7(8):3319-28. doi: 10.1021/pr8001832. Epub 2008 Jul 1.

PMID:
18590317
[PubMed - indexed for MEDLINE]
12.

A Bayesian estimator of protein-protein association probabilities.

Gilmore JM, Auberry DL, Sharp JL, White AM, Anderson KK, Daly DS.

Bioinformatics. 2008 Jul 1;24(13):1554-5. doi: 10.1093/bioinformatics/btn238. Epub 2008 May 22.

PMID:
18499697
[PubMed - indexed for MEDLINE]
Free Article
13.

MASIC: a software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features.

Monroe ME, Shaw JL, Daly DS, Adkins JN, Smith RD.

Comput Biol Chem. 2008 Jun;32(3):215-7. doi: 10.1016/j.compbiolchem.2008.02.006. Epub 2008 Feb 26.

PMID:
18440872
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Mixed-effects statistical model for comparative LC-MS proteomics studies.

Daly DS, Anderson KK, Panisko EA, Purvine SO, Fang R, Monroe ME, Baker SE.

J Proteome Res. 2008 Mar;7(3):1209-17. doi: 10.1021/pr070441i. Epub 2008 Feb 6.

PMID:
18251496
[PubMed - indexed for MEDLINE]
15.

The effects of shared peptides on protein quantitation in label-free proteomics by LC/MS/MS.

Jin S, Daly DS, Springer DL, Miller JH.

J Proteome Res. 2008 Jan;7(1):164-9. Epub 2007 Nov 15.

PMID:
18001079
[PubMed - indexed for MEDLINE]
16.

Statistically inferring protein-protein associations with affinity isolation LC-MS/MS assays.

Sharp JL, Anderson KK, Hurst GB, Daly DS, Pelletier DA, Cannon WR, Auberry DL, Schmoyer DD, McDonald WH, White AM, Hooker BS, Victry KD, Buchanan MV, Kery V, Wiley HS.

J Proteome Res. 2007 Sep;6(9):3788-95. Epub 2007 Aug 11.

PMID:
17691832
[PubMed - indexed for MEDLINE]
17.

An estimate of biofilm properties using an acoustic microscope.

Good MS, Wend CF, Bond LJ, Mclean JS, Panetta PD, Ahmed S, Crawford SL, Daly DS.

IEEE Trans Ultrason Ferroelectr Freq Control. 2006 Sep;53(9):1637-48.

PMID:
16964914
[PubMed - indexed for MEDLINE]
18.

Comparing bacterial DNA microarray fingerprints.

Willse A, Chandler DP, White A, Protic M, Daly DS, Wunschel S.

Stat Appl Genet Mol Biol. 2005;4:Article19. Epub 2005 Aug 15.

PMID:
16646836
[PubMed]
19.

ProMAT: protein microarray analysis tool.

White AM, Daly DS, Varnum SM, Anderson KK, Bollinger N, Zangar RC.

Bioinformatics. 2006 May 15;22(10):1278-9. Epub 2006 Apr 4.

PMID:
16595561
[PubMed - indexed for MEDLINE]
Free Article
20.

Estimating probabilities of peptide database identifications to LC-FTICR-MS observations.

Anderson KK, Monroe ME, Daly DS.

Proteome Sci. 2006 Feb 24;4:1.

PMID:
16504106
[PubMed]
Free PMC Article
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