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Results: 1 to 20 of 25

1.

Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093(T)).

Kappler U, Davenport K, Beatson S, Lucas S, Lapidus A, Copeland A, Berry KW, Glavina Del Rio T, Hammon N, Dalin E, Tice H, Pitluck S, Richardson P, Bruce D, Goodwin LA, Han C, Tapia R, Detter JC, Chang YJ, Jeffries CD, Land M, Hauser L, Kyrpides NC, Göker M, Ivanova N, Klenk HP, Woyke T.

Stand Genomic Sci. 2012 Oct 10;7(1):44-58. doi: 10.4056/sigs.3006378. Epub 2012 Sep 26.

PMID:
23450099
[PubMed]
Free PMC Article
2.

Complete genome sequence of Thauera aminoaromatica strain MZ1T.

Jiang K, Sanseverino J, Chauhan A, Lucas S, Copeland A, Lapidus A, Del Rio TG, Dalin E, Tice H, Bruce D, Goodwin L, Pitluck S, Sims D, Brettin T, Detter JC, Han C, Chang YJ, Larimer F, Land M, Hauser L, Kyrpides NC, Mikhailova N, Moser S, Jegier P, Close D, Debruyn JM, Wang Y, Layton AC, Allen MS, Sayler GS.

Stand Genomic Sci. 2012 Jul 30;6(3):325-35. doi: 10.4056/sigs.2696029. Epub 2012 Jul 20.

PMID:
23407619
[PubMed]
Free PMC Article
3.

Complete genome sequence of Polynucleobacter necessarius subsp. asymbioticus type strain (QLW-P1DMWA-1(T)).

Meincke L, Copeland A, Lapidus A, Lucas S, Berry KW, Del Rio TG, Hammon N, Dalin E, Tice H, Pitluck S, Richardson P, Bruce D, Goodwin L, Han C, Tapia R, Detter JC, Schmutz J, Brettin T, Larimer F, Land M, Hauser L, Kyrpides NC, Ivanova N, Göker M, Woyke T, Wu QL, Pöckl M, Hahn MW, Klenk HP.

Stand Genomic Sci. 2012 Mar 19;6(1):74-83. doi: 10.4056/sigs.2395367. Epub 2012 Mar 5.

PMID:
22675600
[PubMed]
Free PMC Article
4.

Complete genome sequence of the halophilic and highly halotolerant Chromohalobacter salexigens type strain (1H11(T)).

Copeland A, O'Connor K, Lucas S, Lapidus A, Berry KW, Detter JC, Del Rio TG, Hammon N, Dalin E, Tice H, Pitluck S, Bruce D, Goodwin L, Han C, Tapia R, Saunders E, Schmutz J, Brettin T, Larimer F, Land M, Hauser L, Vargas C, Nieto JJ, Kyrpides NC, Ivanova N, Göker M, Klenk HP, Csonka LN, Woyke T.

Stand Genomic Sci. 2011 Dec 31;5(3):379-88. doi: 10.4056/sigs.2285059. Epub 2011 Dec 30.

PMID:
22675587
[PubMed]
Free PMC Article
5.

Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95(T)).

Kiss H, Nett M, Domin N, Martin K, Maresca JA, Copeland A, Lapidus A, Lucas S, Berry KW, Glavina Del Rio T, Dalin E, Tice H, Pitluck S, Richardson P, Bruce D, Goodwin L, Han C, Detter JC, Schmutz J, Brettin T, Land M, Hauser L, Kyrpides NC, Ivanova N, Göker M, Woyke T, Klenk HP, Bryant DA.

Stand Genomic Sci. 2011 Dec 31;5(3):356-70. doi: 10.4056/sigs.2194987. Epub 2011 Dec 23.

PMID:
22675585
[PubMed]
Free PMC Article
6.

Complete Genome Sequence of a thermotolerant sporogenic lactic acid bacterium, Bacillus coagulans strain 36D1.

Rhee MS, Moritz BE, Xie G, Glavina Del Rio T, Dalin E, Tice H, Bruce D, Goodwin L, Chertkov O, Brettin T, Han C, Detter C, Pitluck S, Land ML, Patel M, Ou M, Harbrucker R, Ingram LO, Shanmugam KT.

Stand Genomic Sci. 2011 Dec 31;5(3):331-40. doi: 10.4056/sigs.2365342. Epub 2011 Dec 22.

PMID:
22675583
[PubMed]
Free PMC Article
7.

Complete genome sequence of Tolumonas auensis type strain (TA 4).

Chertkov O, Copeland A, Lucas S, Lapidus A, Berry KW, Detter JC, Del Rio TG, Hammon N, Dalin E, Tice H, Pitluck S, Richardson P, Bruce D, Goodwin L, Han C, Tapia R, Saunders E, Schmutz J, Brettin T, Larimer F, Land M, Hauser L, Spring S, Rohde M, Kyrpides NC, Ivanova N, Göker M, Beller HR, Klenk HP, Woyke T.

Stand Genomic Sci. 2011 Oct 15;5(1):112-20. doi: 10.4056/sigs.2184986. Epub 2011 Sep 23.

PMID:
22180815
[PubMed]
Free PMC Article
8.

Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus.

Tang KH, Barry K, Chertkov O, Dalin E, Han CS, Hauser LJ, Honchak BM, Karbach LE, Land ML, Lapidus A, Larimer FW, Mikhailova N, Pitluck S, Pierson BK, Blankenship RE.

BMC Genomics. 2011 Jun 29;12:334. doi: 10.1186/1471-2164-12-334.

PMID:
21714912
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Complete genome sequence of the anaerobic, halophilic alkalithermophile Natranaerobius thermophilus JW/NM-WN-LF.

Zhao B, Mesbah NM, Dalin E, Goodwin L, Nolan M, Pitluck S, Chertkov O, Brettin TS, Han J, Larimer FW, Land ML, Hauser L, Kyrpides N, Wiegel J.

J Bacteriol. 2011 Aug;193(15):4023-4. doi: 10.1128/JB.05157-11. Epub 2011 Jun 3.

PMID:
21642468
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genome Sequence of the ethene- and vinyl chloride-oxidizing actinomycete Nocardioides sp. strain JS614.

Coleman NV, Wilson NL, Barry K, Brettin TS, Bruce DC, Copeland A, Dalin E, Detter JC, Del Rio TG, Goodwin LA, Hammon NM, Han S, Hauser LJ, Israni S, Kim E, Kyrpides N, Land ML, Lapidus A, Larimer FW, Lucas S, Pitluck S, Richardson P, Schmutz J, Tapia R, Thompson S, Tice HN, Spain JC, Gossett JG, Mattes TE.

J Bacteriol. 2011 Jul;193(13):3399-400. doi: 10.1128/JB.05109-11. Epub 2011 May 6.

PMID:
21551312
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Complete genome sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b.

Vishnivetskaya TA, Lucas S, Copeland A, Lapidus A, Glavina del Rio T, Dalin E, Tice H, Bruce DC, Goodwin LA, Pitluck S, Saunders E, Brettin T, Detter C, Han C, Larimer F, Land ML, Hauser LJ, Kyrpides NC, Ovchinnikova G, Kathariou S, Ramaley RF, Rodrigues DF, Hendrix C, Richardson P, Tiedje JM.

J Bacteriol. 2011 Jun;193(11):2880-1. doi: 10.1128/JB.00303-11. Epub 2011 Apr 1.

PMID:
21460088
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genome sequence of Chthoniobacter flavus Ellin428, an aerobic heterotrophic soil bacterium.

Kant R, van Passel MW, Palva A, Lucas S, Lapidus A, Glavina del Rio T, Dalin E, Tice H, Bruce D, Goodwin L, Pitluck S, Larimer FW, Land ML, Hauser L, Sangwan P, de Vos WM, Janssen PH, Smidt H.

J Bacteriol. 2011 Jun;193(11):2902-3. doi: 10.1128/JB.00295-11. Epub 2011 Apr 1.

PMID:
21460085
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genome sequence of "Pedosphaera parvula" Ellin514, an aerobic Verrucomicrobial isolate from pasture soil.

Kant R, van Passel MW, Sangwan P, Palva A, Lucas S, Copeland A, Lapidus A, Glavina del Rio T, Dalin E, Tice H, Bruce D, Goodwin L, Pitluck S, Chertkov O, Larimer FW, Land ML, Hauser L, Brettin TS, Detter JC, Han S, de Vos WM, Janssen PH, Smidt H.

J Bacteriol. 2011 Jun;193(11):2900-1. doi: 10.1128/JB.00299-11. Epub 2011 Apr 1.

PMID:
21460084
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genome sequence of Victivallis vadensis ATCC BAA-548, an anaerobic bacterium from the phylum Lentisphaerae, isolated from the human gastrointestinal tract.

van Passel MW, Kant R, Palva A, Lucas S, Copeland A, Lapidus A, Glavina del Rio T, Dalin E, Tice H, Bruce D, Goodwin L, Pitluck S, Davenport KW, Sims D, Brettin TS, Detter JC, Han S, Larimer FW, Land ML, Hauser L, Kyrpides N, Ovchinnikova G, Richardson PP, de Vos WM, Smidt H, Zoetendal EG.

J Bacteriol. 2011 May;193(9):2373-4. doi: 10.1128/JB.00271-11. Epub 2011 Mar 11.

PMID:
21398537
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri.

Frese SA, Benson AK, Tannock GW, Loach DM, Kim J, Zhang M, Oh PL, Heng NC, Patil PB, Juge N, Mackenzie DA, Pearson BM, Lapidus A, Dalin E, Tice H, Goltsman E, Land M, Hauser L, Ivanova N, Kyrpides NC, Walter J.

PLoS Genet. 2011 Feb;7(2):e1001314. doi: 10.1371/journal.pgen.1001314. Epub 2011 Feb 17.

PMID:
21379339
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum.

Sucgang R, Kuo A, Tian X, Salerno W, Parikh A, Feasley CL, Dalin E, Tu H, Huang E, Barry K, Lindquist E, Shapiro H, Bruce D, Schmutz J, Salamov A, Fey P, Gaudet P, Anjard C, Babu MM, Basu S, Bushmanova Y, van der Wel H, Katoh-Kurasawa M, Dinh C, Coutinho PM, Saito T, Elias M, Schaap P, Kay RR, Henrissat B, Eichinger L, Rivero F, Putnam NH, West CM, Loomis WF, Chisholm RL, Shaulsky G, Strassmann JE, Queller DC, Kuspa A, Grigoriev IV.

Genome Biol. 2011;12(2):R20. doi: 10.1186/gb-2011-12-2-r20. Epub 2011 Feb 28.

PMID:
21356102
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Evaluation of amylase testing as a tool for saliva screening of crime scene trace swabs.

Hedman J, Dalin E, Rasmusson B, Ansell R.

Forensic Sci Int Genet. 2011 Jun;5(3):194-8. doi: 10.1016/j.fsigen.2010.03.003. Epub 2010 Apr 8.

PMID:
20457099
[PubMed - indexed for MEDLINE]
18.

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.

Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, Kunin V, Goodwin L, Wu M, Tindall BJ, Hooper SD, Pati A, Lykidis A, Spring S, Anderson IJ, D'haeseleer P, Zemla A, Singer M, Lapidus A, Nolan M, Copeland A, Han C, Chen F, Cheng JF, Lucas S, Kerfeld C, Lang E, Gronow S, Chain P, Bruce D, Rubin EM, Kyrpides NC, Klenk HP, Eisen JA.

Nature. 2009 Dec 24;462(7276):1056-60. doi: 10.1038/nature08656.

PMID:
20033048
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation.

Allen MA, Lauro FM, Williams TJ, Burg D, Siddiqui KS, De Francisci D, Chong KW, Pilak O, Chew HH, De Maere MZ, Ting L, Katrib M, Ng C, Sowers KR, Galperin MY, Anderson IJ, Ivanova N, Dalin E, Martinez M, Lapidus A, Hauser L, Land M, Thomas T, Cavicchioli R.

ISME J. 2009 Sep;3(9):1012-35. doi: 10.1038/ismej.2009.45. Epub 2009 Apr 30.

PMID:
19404327
[PubMed - indexed for MEDLINE]
20.

Complete genome sequence of Methanocorpusculum labreanum type strain Z.

Anderson IJ, Sieprawska-Lupa M, Goltsman E, Lapidus A, Copeland A, Glavina Del Rio T, Tice H, Dalin E, Barry K, Pitluck S, Hauser L, Land M, Lucas S, Richardson P, Whitman WB, Kyrpides NC.

Stand Genomic Sci. 2009 Sep 24;1(2):197-203. doi: 10.4056/sigs.35575.

PMID:
21304657
[PubMed]
Free PMC Article
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