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The CHEMDNER corpus of chemicals and drugs and its annotation principles.

Krallinger M, Rabal O, Leitner F, Vazquez M, Salgado D, Lu Z, Leaman R, Lu Y, Ji D, Lowe DM, Sayle RA, Batista-Navarro RT, Rak R, Huber T, Rocktäschel T, Matos S, Campos D, Tang B, Xu H, Munkhdalai T, Ryu KH, Ramanan SV, Nathan S, Žitnik S, Bajec M, Weber L, Irmer M, Akhondi SA, Kors JA, Xu S, An X, Sikdar UK, Ekbal A, Yoshioka M, Dieb TM, Choi M, Verspoor K, Khabsa M, Giles CL, Liu H, Ravikumar KE, Lamurias A, Couto FM, Dai HJ, Tsai RT, Ata C, Can T, Usié A, Alves R, Segura-Bedmar I, Martínez P, Oyarzabal J, Valencia A.

J Cheminform. 2015 Jan 19;7(Suppl 1 Text mining for chemistry and the CHEMDNER track):S2. doi: 10.1186/1758-2946-7-S1-S2. eCollection 2015.


Enhancing of chemical compound and drug name recognition using representative tag scheme and fine-grained tokenization.

Dai HJ, Lai PT, Chang YC, Tsai RT.

J Cheminform. 2015 Jan 19;7(Suppl 1 Text mining for chemistry and the CHEMDNER track):S14. doi: 10.1186/1758-2946-7-S1-S14. eCollection 2015.


Metformin decreases IL-22 secretion to suppress tumor growth in an orthotopic mouse model of hepatocellular carcinoma.

Zhao D, Long XD, Lu TF, Wang T, Zhang WW, Liu YX, Cui XL, Dai HJ, Xue F, Xia Q.

Int J Cancer. 2015 Jun 1;136(11):2556-65. doi: 10.1002/ijc.29305. Epub 2014 Nov 21.


LiverCancerMarkerRIF: a liver cancer biomarker interactive curation system combining text mining and expert annotations.

Dai HJ, Wu JC, Lin WS, Reyes AJ, Dela Rosa MA, Syed-Abdul S, Tsai RT, Hsu WL.

Database (Oxford). 2014 Aug 27;2014. pii: bau085. doi: 10.1093/database/bau085. Print 2014.


Overview of the gene ontology task at BioCreative IV.

Mao Y, Van Auken K, Li D, Arighi CN, McQuilton P, Hayman GT, Tweedie S, Schaeffer ML, Laulederkind SJ, Wang SJ, Gobeill J, Ruch P, Luu AT, Kim JJ, Chiang JH, Chen YD, Yang CJ, Liu H, Zhu D, Li Y, Yu H, Emadzadeh E, Gonzalez G, Chen JM, Dai HJ, Lu Z.

Database (Oxford). 2014 Aug 25;2014. pii: bau086. doi: 10.1093/database/bau086. Print 2014.


BioC interoperability track overview.

Comeau DC, Batista-Navarro RT, Dai HJ, Doğan RI, Yepes AJ, Khare R, Lu Z, Marques H, Mattingly CJ, Neves M, Peng Y, Rak R, Rinaldi F, Tsai RT, Verspoor K, Wiegers TC, Wu CH, Wilbur WJ.

Database (Oxford). 2014 Jun 30;2014. pii: bau053. doi: 10.1093/database/bau053. Print 2014. Review.


Active and passive smoking with breast cancer risk for Chinese females: a systematic review and meta-analysis.

Chen C, Huang YB, Liu XO, Gao Y, Dai HJ, Song FJ, Li WQ, Wang J, Yan Y, Wang PS, Wang YG, Chen KX.

Chin J Cancer. 2014 Jun;33(6):306-16. doi: 10.5732/cjc.013.10248. Epub 2014 May 5.


Association between dietary factors and breast cancer risk among Chinese females: systematic review and meta-analysis.

Liu XO, Huang YB, Gao Y, Chen C, Yan Y, Dai HJ, Song FJ, Wang YG, Wang PS, Chen KX.

Asian Pac J Cancer Prev. 2014;15(3):1291-8. Review.


Tea consumption, alcohol drinking and physical activity associations with breast cancer risk among Chinese females: a systematic review and meta-analysis.

Gao Y, Huang YB, Liu XO, Chen C, Dai HJ, Song FJ, Wang J, Chen KX, Wang YG.

Asian Pac J Cancer Prev. 2013;14(12):7543-50. Review.


Collective instance-level gene normalization on the IGN corpus.

Dai HJ, Wu JC, Tsai RT.

PLoS One. 2013 Nov 25;8(11):e79517. doi: 10.1371/journal.pone.0079517. eCollection 2013.


TEMPTING system: a hybrid method of rule and machine learning for temporal relation extraction in patient discharge summaries.

Chang YC, Dai HJ, Wu JC, Chen JM, Tsai RT, Hsu WL.

J Biomed Inform. 2013 Dec;46 Suppl:S54-62. doi: 10.1016/j.jbi.2013.09.007. Epub 2013 Sep 20.


[A comparison of ventilation/perfusion single photon emission CT and CT pulmonary angiography for diagnosis of pulmonary embolism].

Meng JJ, Zhang LJ, Wang Q, Fang W, Dai HJ, Yan J, Wang T, Yao ZM, He J, Li M, Mi HZ, Jiao J, Zheng YM.

Zhonghua Jie He He Hu Xi Za Zhi. 2013 Mar;36(3):177-81. Chinese.


MicroRNA-23b inhibits enterovirus 71 replication through downregulation of EV71 VPl protein.

Wen BP, Dai HJ, Yang YH, Zhuang Y, Sheng R.

Intervirology. 2013;56(3):195-200. doi: 10.1159/000348504. Epub 2013 Apr 17.


T-HOD: a literature-based candidate gene database for hypertension, obesity and diabetes.

Dai HJ, Wu JC, Tsai RT, Pan WH, Hsu WL.

Database (Oxford). 2013 Feb 12;2013:bas061. doi: 10.1093/database/bas061. Print 2013.


Lycorine induces cell-cycle arrest in the G0/G1 phase in K562 cells via HDAC inhibition.

Li L, Dai HJ, Ye M, Wang SL, Xiao XJ, Zheng J, Chen HY, Luo YH, Liu J.

Cancer Cell Int. 2012 Nov 23;12(1):49. doi: 10.1186/1475-2867-12-49.


Total flavonoids of Bidens bipinnata L. a traditional Chinese medicine inhibits the production of inflammatory cytokines of vessel endothelial cells stimulated by sera from Henoch-Schönlein purpura patients.

Bo Y, Yuan LP, Zhang JJ, Meng DD, Jing H, Dai HJ.

J Pharm Pharmacol. 2012 Jun;64(6):882-7. doi: 10.1111/j.2042-7158.2012.01480.x. Epub 2012 Mar 27.


Coreference resolution of medical concepts in discharge summaries by exploiting contextual information.

Dai HJ, Chen CY, Wu CY, Lai PT, Tsai RT, Hsu WL.

J Am Med Inform Assoc. 2012 Sep-Oct;19(5):888-96. doi: 10.1136/amiajnl-2012-000808. Epub 2012 May 3.


[Prevalent characteristics in children with hand-foot-mouth disease in the Kunming area in 2010].

Yang XH, Wu Q, Wen BP, Dai HJ, Zhuang Y, Yang JY.

Zhongguo Dang Dai Er Ke Za Zhi. 2012 Mar;14(3):192-4. Chinese.


Chinese multi-center study of lung scintigraphy and CT pulmonary angiography for the diagnosis of pulmonary embolism.

He J, Wang F, Dai HJ, Li M, Wang Q, Yao Z, Lv B, Xiong CM, He JG, Liu ZH, He ZX, Fang W.

Int J Cardiovasc Imaging. 2012 Oct;28(7):1799-805. doi: 10.1007/s10554-012-0013-9. Epub 2012 Jan 8.


The gene normalization task in BioCreative III.

Lu Z, Kao HY, Wei CH, Huang M, Liu J, Kuo CJ, Hsu CN, Tsai RT, Dai HJ, Okazaki N, Cho HC, Gerner M, Solt I, Agarwal S, Liu F, Vishnyakova D, Ruch P, Romacker M, Rinaldi F, Bhattacharya S, Srinivasan P, Liu H, Torii M, Matos S, Campos D, Verspoor K, Livingston KM, Wilbur WJ.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S2. doi: 10.1186/1471-2105-12-S8-S2.

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