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Results: 19

1.

Understanding the general packing rearrangements required for successful template based modeling of protein structure from a CASP experiment.

Day R, Joo H, Chavan AC, Lennox KP, Chen YA, Dahl DB, Vannucci M, Tsai JW.

Comput Biol Chem. 2013 Feb;42:40-8. doi: 10.1016/j.compbiolchem.2012.10.008. Epub 2012 Nov 23.

PMID:
23266765
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response.

Schwartz S, Friedberg I, Ivanov IV, Davidson LA, Goldsby JS, Dahl DB, Herman D, Wang M, Donovan SM, Chapkin RS.

Genome Biol. 2012 Apr 30;13(4):r32. doi: 10.1186/gb-2012-13-4-r32.

PMID:
22546241
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Near-native protein loop sampling using nonparametric density estimation accommodating sparcity.

Joo H, Chavan AG, Day R, Lennox KP, Sukhanov P, Dahl DB, Vannucci M, Tsai J.

PLoS Comput Biol. 2011 Oct;7(10):e1002234. doi: 10.1371/journal.pcbi.1002234. Epub 2011 Oct 20.

PMID:
22028638
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Characterizing the regularity of tetrahedral packing motifs in protein tertiary structure.

Day R, Lennox KP, Dahl DB, Vannucci M, Tsai JW.

Bioinformatics. 2010 Dec 15;26(24):3059-66. doi: 10.1093/bioinformatics/btq573. Epub 2010 Nov 2.

PMID:
21047817
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A DIRICHLET PROCESS MIXTURE OF HIDDEN MARKOV MODELS FOR PROTEIN STRUCTURE PREDICTION.

Lennox KP, Dahl DB, Vannucci M, Day R, Tsai JW.

Ann Appl Stat. 2010 Jun 1;4(2):916-942.

PMID:
21031154
[PubMed]
Free PMC Article
6.

Density Estimation for Protein Conformation Angles Using a Bivariate von Mises Distribution and Bayesian Nonparametrics.

Lennox KP, Dahl DB, Vannucci M, Tsai JW.

J Am Stat Assoc. 2009 Jun 1;104(486):586-596.

PMID:
20221312
[PubMed]
Free PMC Article
7.

The contributions of molecular framework to IMS collision cross-sections of gas-phase peptide ions.

Tao L, Dahl DB, Pérez LM, Russell DH.

J Am Soc Mass Spectrom. 2009 Sep;20(9):1593-602. doi: 10.1016/j.jasms.2009.04.018. Epub 2009 May 5.

PMID:
19477658
[PubMed - indexed for MEDLINE]
Free Article
8.
9.

Assessing side-chain perturbations of the protein backbone: a knowledge-based classification of residue Ramachandran space.

Dahl DB, Bohannan Z, Mo Q, Vannucci M, Tsai J.

J Mol Biol. 2008 May 2;378(3):749-58. doi: 10.1016/j.jmb.2008.02.043. Epub 2008 Feb 29.

PMID:
18377931
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genome-wide expression profiling reveals EBV-associated inhibition of MHC class I expression in nasopharyngeal carcinoma.

Sengupta S, den Boon JA, Chen IH, Newton MA, Dahl DB, Chen M, Cheng YJ, Westra WH, Chen CJ, Hildesheim A, Sugden B, Ahlquist P.

Cancer Res. 2006 Aug 15;66(16):7999-8006.

PMID:
16912175
[PubMed - indexed for MEDLINE]
Free Article
11.

Accommodative ciliary body and lens function in rhesus monkeys, I: normal lens, zonule and ciliary process configuration in the iridectomized eye.

Croft MA, Glasser A, Heatley G, McDonald J, Ebbert T, Dahl DB, Nadkarni NV, Kaufman PL.

Invest Ophthalmol Vis Sci. 2006 Mar;47(3):1076-86.

PMID:
16505044
[PubMed - indexed for MEDLINE]
Free Article
12.

Accommodative function in rhesus monkeys: effects of aging and calorie restriction.

Mattison JA, Croft MA, Dahl DB, Roth GS, Lane MA, Ingram DK, Kaufman PL.

Age (Dordr). 2005 Mar;27(1):59-67. doi: 10.1007/s11357-005-4005-8. Epub 2005 May 2.

PMID:
23598604
[PubMed]
Free PMC Article
13.

Vitreous glutamate concentration and axon loss in monkeys with experimental glaucoma.

Wamsley S, Gabelt BT, Dahl DB, Case GL, Sherwood RW, May CA, Hernandez MR, Kaufman PL.

Arch Ophthalmol. 2005 Jan;123(1):64-70. Erratum in: Arch Ophthalmol. 2005 Apr;123(4):574.

PMID:
15642814
[PubMed - indexed for MEDLINE]
14.

Lipid content in the musculature of the lower leg assessed by fat selective MRI: intra- and interindividual differences and correlation with anthropometric and metabolic data.

Machann J, Bachmann OP, Brechtel K, Dahl DB, Wietek B, Klumpp B, Häring HU, Claussen CD, Jacob S, Schick F.

J Magn Reson Imaging. 2003 Mar;17(3):350-7.

PMID:
12594726
[PubMed - indexed for MEDLINE]
15.

Bone loss detection in rats using a mouse densitometer.

Binkley N, Dahl DB, Engelke J, Kawahara-Baccus T, Krueger D, Colman RJ.

J Bone Miner Res. 2003 Feb;18(2):370-5.

PMID:
12568415
[PubMed - indexed for MEDLINE]
16.

Effects of intravenous and dietary lipid challenge on intramyocellular lipid content and the relation with insulin sensitivity in humans.

Bachmann OP, Dahl DB, Brechtel K, Machann J, Haap M, Maier T, Loviscach M, Stumvoll M, Claussen CD, Schick F, Häring HU, Jacob S.

Diabetes. 2001 Nov;50(11):2579-84.

PMID:
11679437
[PubMed - indexed for MEDLINE]
Free Article
17.

Fast elevation of the intramyocellular lipid content in the presence of circulating free fatty acids and hyperinsulinemia: a dynamic 1H-MRS study.

Brechtel K, Dahl DB, Machann J, Bachmann OP, Wenzel I, Maier T, Claussen CD, Häring HU, Jacob S, Schick F.

Magn Reson Med. 2001 Feb;45(2):179-83.

PMID:
11180422
[PubMed - indexed for MEDLINE]
18.

Cellular phenotypes of age-associated skeletal muscle mitochondrial abnormalities in rhesus monkeys.

Lopez ME, Van Zeeland NL, Dahl DB, Weindruch R, Aiken JM.

Mutat Res. 2000 Jul 20;452(1):123-38.

PMID:
10894897
[PubMed - indexed for MEDLINE]
19.

Enantiomeric separation of sulfonium ions by capillary electrophoresis using neutral and charged cyclodextrins.

Valenzuela FA, Green TK, Dahl DB.

Anal Chem. 1998 Sep 1;70(17):3612-8. doi: 10.1021/ac971379j.

PMID:
21644707
[PubMed]

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