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Results: 1 to 20 of 38

1.

Phylogenomically Guided Identification of Industrially Relevant GH1 β-Glucosidases through DNA Synthesis and Nanostructure-Initiator Mass Spectrometry.

Heins RA, Cheng X, Nath S, Deng K, Bowen BP, Chivian DC, Datta S, Friedland GD, D'Haeseleer P, Wu D, Tran-Gyamfi M, Scullin CS, Singh S, Shi W, Hamilton MG, Bendall ML, Sczyrba A, Thompson J, Feldman T, Guenther JM, Gladden JM, Cheng JF, Adams PD, Rubin EM, Simmons BA, Sale KL, Northen TR, Deutsch S.

ACS Chem Biol. 2014 Jul 17. [Epub ahead of print]

PMID:
24984213
[PubMed - as supplied by publisher]
2.

Discovery and characterization of ionic liquid-tolerant thermophilic cellulases from a switchgrass-adapted microbial community.

Gladden JM, Park JI, Bergmann J, Reyes-Ortiz V, D'haeseleer P, Quirino BF, Sale KL, Simmons BA, Singer SW.

Biotechnol Biofuels. 2014 Jan 29;7(1):15. doi: 10.1186/1754-6834-7-15.

PMID:
24479406
[PubMed]
Free PMC Article
3.

Discovery of two novel β-glucosidases from an Amazon soil metagenomic library.

Bergmann JC, Costa OY, Gladden JM, Singer S, Heins R, D'haeseleer P, Simmons BA, Quirino BF.

FEMS Microbiol Lett. 2014 Feb;351(2):147-55. doi: 10.1111/1574-6968.12332. Epub 2013 Dec 16.

PMID:
24236615
[PubMed - in process]
4.

Discovery of microorganisms and enzymes involved in high-solids decomposition of rice straw using metagenomic analyses.

Reddy AP, Simmons CW, D'haeseleer P, Khudyakov J, Burd H, Hadi M, Simmons BA, Singer SW, Thelen MP, Vandergheynst JS.

PLoS One. 2013 Oct 25;8(10):e77985. doi: 10.1371/journal.pone.0077985. eCollection 2013.

PMID:
24205054
[PubMed - in process]
Free PMC Article
5.

Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron.

Deangelis KM, D'Haeseleer P, Chivian D, Simmons B, Arkin AP, Mavromatis K, Malfatti S, Tringe S, Hazen TC.

Stand Genomic Sci. 2013 Feb 25;7(3):382-98. doi: 10.4056/sigs.3377516. eCollection 2013.

PMID:
24019987
[PubMed]
Free PMC Article
6.

Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass.

D'haeseleer P, Gladden JM, Allgaier M, Chain PS, Tringe SG, Malfatti SA, Aldrich JT, Nicora CD, Robinson EW, Paša-Tolić L, Hugenholtz P, Simmons BA, Singer SW.

PLoS One. 2013 Jul 19;8(7):e68465. doi: 10.1371/journal.pone.0068465. Print 2013.

PMID:
23894306
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Rapid countermeasure discovery against Francisella tularensis based on a metabolic network reconstruction.

Chaudhury S, Abdulhameed MD, Singh N, Tawa GJ, D'haeseleer PM, Zemla AT, Navid A, Zhou CE, Franklin MC, Cheung J, Rudolph MJ, Love J, Graf JF, Rozak DA, Dankmeyer JL, Amemiya K, Daefler S, Wallqvist A.

PLoS One. 2013 May 21;8(5):e63369. doi: 10.1371/journal.pone.0063369. Print 2013.

PMID:
23704901
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

From soil to structure, a novel dimeric β-glucosidase belonging to glycoside hydrolase family 3 isolated from compost using metagenomic analysis.

McAndrew RP, Park JI, Heins RA, Reindl W, Friedland GD, D'haeseleer P, Northen T, Sale KL, Simmons BA, Adams PD.

J Biol Chem. 2013 May 24;288(21):14985-92. doi: 10.1074/jbc.M113.458356. Epub 2013 Apr 11.

PMID:
23580647
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Glycoside hydrolases from a targeted compost metagenome, activity-screening and functional characterization.

Dougherty MJ, D'haeseleer P, Hazen TC, Simmons BA, Adams PD, Hadi MZ.

BMC Biotechnol. 2012 Jul 3;12:38. doi: 10.1186/1472-6750-12-38.

PMID:
22759983
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Complete genome sequence of Thioalkalivibrio sp. K90mix.

Muyzer G, Sorokin DY, Mavromatis K, Lapidus A, Foster B, Sun H, Ivanova N, Pati A, D'haeseleer P, Woyke T, Kyrpides NC.

Stand Genomic Sci. 2011 Dec 31;5(3):341-55. doi: 10.4056/sigs.2315092. Epub 2011 Dec 23.

PMID:
22675584
[PubMed]
Free PMC Article
11.

A thermophilic ionic liquid-tolerant cellulase cocktail for the production of cellulosic biofuels.

Park JI, Steen EJ, Burd H, Evans SS, Redding-Johnson AM, Batth T, Benke PI, D'haeseleer P, Sun N, Sale KL, Keasling JD, Lee TS, Petzold CJ, Mukhopadhyay A, Singer SW, Simmons BA, Gladden JM.

PLoS One. 2012;7(5):e37010. doi: 10.1371/journal.pone.0037010. Epub 2012 May 23.

PMID:
22649505
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus.

Khudyakov JI, D'haeseleer P, Borglin SE, Deangelis KM, Woo H, Lindquist EA, Hazen TC, Simmons BA, Thelen MP.

Proc Natl Acad Sci U S A. 2012 Aug 7;109(32):E2173-82. doi: 10.1073/pnas.1112750109. Epub 2012 May 14.

PMID:
22586090
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Application of phenotypic microarrays to environmental microbiology.

Borglin S, Joyner D, DeAngelis KM, Khudyakov J, D'haeseleer P, Joachimiak MP, Hazen T.

Curr Opin Biotechnol. 2012 Feb;23(1):41-8. doi: 10.1016/j.copbio.2011.12.006. Epub 2012 Jan 2. Review.

PMID:
22217654
[PubMed - indexed for MEDLINE]
Free Article
14.

Complete genome sequence of "Enterobacter lignolyticus" SCF1.

Deangelis KM, D'Haeseleer P, Chivian D, Fortney JL, Khudyakov J, Simmons B, Woo H, Arkin AP, Davenport KW, Goodwin L, Chen A, Ivanova N, Kyrpides NC, Mavromatis K, Woyke T, Hazen TC.

Stand Genomic Sci. 2011 Oct 15;5(1):69-85. doi: 10.4056/sigs.2104875. Epub 2011 Sep 23.

PMID:
22180812
[PubMed]
Free PMC Article
15.

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume.

Lu Z, Deng Y, Van Nostrand JD, He Z, Voordeckers J, Zhou A, Lee YJ, Mason OU, Dubinsky EA, Chavarria KL, Tom LM, Fortney JL, Lamendella R, Jansson JK, D'haeseleer P, Hazen TC, Zhou J.

ISME J. 2012 Feb;6(2):451-60. doi: 10.1038/ismej.2011.91. Epub 2011 Aug 4.

PMID:
21814288
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Identification of biofilm matrix-associated proteins from an acid mine drainage microbial community.

Jiao Y, D'haeseleer P, Dill BD, Shah M, Verberkmoes NC, Hettich RL, Banfield JF, Thelen MP.

Appl Environ Microbiol. 2011 Aug;77(15):5230-7. doi: 10.1128/AEM.03005-10. Epub 2011 Jun 17.

PMID:
21685158
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Complete genome sequence of "Thioalkalivibrio sulfidophilus" HL-EbGr7.

Muyzer G, Sorokin DY, Mavromatis K, Lapidus A, Clum A, Ivanova N, Pati A, d'Haeseleer P, Woyke T, Kyrpides NC.

Stand Genomic Sci. 2011 Feb 14;4(1):23-35. doi: 10.4056/sigs.1483693.

PMID:
21475584
[PubMed]
Free PMC Article
18.

Deep-sea oil plume enriches indigenous oil-degrading bacteria.

Hazen TC, Dubinsky EA, DeSantis TZ, Andersen GL, Piceno YM, Singh N, Jansson JK, Probst A, Borglin SE, Fortney JL, Stringfellow WT, Bill M, Conrad ME, Tom LM, Chavarria KL, Alusi TR, Lamendella R, Joyner DC, Spier C, Baelum J, Auer M, Zemla ML, Chakraborty R, Sonnenthal EL, D'haeseleer P, Holman HY, Osman S, Lu Z, Van Nostrand JD, Deng Y, Zhou J, Mason OU.

Science. 2010 Oct 8;330(6001):204-8. doi: 10.1126/science.1195979. Epub 2010 Aug 24.

PMID:
20736401
[PubMed - indexed for MEDLINE]
Free Article
19.

Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community.

Allgaier M, Reddy A, Park JI, Ivanova N, D'haeseleer P, Lowry S, Sapra R, Hazen TC, Simmons BA, VanderGheynst JS, Hugenholtz P.

PLoS One. 2010 Jan 21;5(1):e8812. doi: 10.1371/journal.pone.0008812.

PMID:
20098679
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.

Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, Kunin V, Goodwin L, Wu M, Tindall BJ, Hooper SD, Pati A, Lykidis A, Spring S, Anderson IJ, D'haeseleer P, Zemla A, Singer M, Lapidus A, Nolan M, Copeland A, Han C, Chen F, Cheng JF, Lucas S, Kerfeld C, Lang E, Gronow S, Chain P, Bruce D, Rubin EM, Kyrpides NC, Klenk HP, Eisen JA.

Nature. 2009 Dec 24;462(7276):1056-60. doi: 10.1038/nature08656.

PMID:
20033048
[PubMed - indexed for MEDLINE]
Free PMC Article

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