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Items: 1 to 20 of 31

1.

Modeling Dynamic Systems with Efficient Ensembles of Process-Based Models.

Simidjievski N, Todorovski L, Džeroski S.

PLoS One. 2016 Apr 14;11(4):e0153507. doi: 10.1371/journal.pone.0153507. eCollection 2016.

2.

Learning stochastic process-based models of dynamical systems from knowledge and data.

Tanevski J, Todorovski L, Džeroski S.

BMC Syst Biol. 2016 Mar 22;10(1):30. doi: 10.1186/s12918-016-0273-4.

3.

Semi-Supervised Multi-View Learning for Gene Network Reconstruction.

Ceci M, Pio G, Kuzmanovski V, Džeroski S.

PLoS One. 2015 Dec 7;10(12):e0144031. doi: 10.1371/journal.pone.0144031. eCollection 2015.

4.

The discriminatory value of cardiorespiratory interactions in distinguishing awake from anaesthetised states: a randomised observational study.

Kenwright DA, Bernjak A, Draegni T, Dzeroski S, Entwistle M, Horvat M, Kvandal P, Landsverk SA, McClintock PV, Musizza B, Petrovčič J, Raeder J, Sheppard LW, Smith AF, Stankovski T, Stefanovska A.

Anaesthesia. 2015 Dec;70(12):1356-68. doi: 10.1111/anae.13208. Epub 2015 Sep 9.

PMID:
26350998
5.

Domain-specific model selection for structural identification of the Rab5-Rab7 dynamics in endocytosis.

Tanevski J, Todorovski L, Kalaidzidis Y, Džeroski S.

BMC Syst Biol. 2015 Jun 26;9:31. doi: 10.1186/s12918-015-0175-x.

6.

Candida and Fusarium species known as opportunistic human pathogens from customer-accessible parts of residential washing machines.

Babič MN, Zalar P, Ženko B, Schroers HJ, Džeroski S, Gunde-Cimerman N.

Fungal Biol. 2015 Mar;119(2-3):95-113. doi: 10.1016/j.funbio.2014.10.007. Epub 2015 Jan 8.

PMID:
25749362
7.

Chaophilic or chaotolerant fungi: a new category of extremophiles?

Zajc J, Džeroski S, Kocev D, Oren A, Sonjak S, Tkavc R, Gunde-Cimerman N.

Front Microbiol. 2014 Dec 23;5:708. doi: 10.3389/fmicb.2014.00708. eCollection 2014.

8.

Modeling water outflow from tile-drained agricultural fields.

Kuzmanovski V, Trajanov A, Leprince F, Džeroski S, Debeljak M.

Sci Total Environ. 2015 Feb 1;505:390-401. doi: 10.1016/j.scitotenv.2014.10.009. Epub 2014 Oct 21.

PMID:
25461041
9.

Improved medical image modality classification using a combination of visual and textual features.

Dimitrovski I, Kocev D, Kitanovski I, Loskovska S, Džeroski S.

Comput Med Imaging Graph. 2015 Jan;39:14-26. doi: 10.1016/j.compmedimag.2014.06.005. Epub 2014 Jun 19.

PMID:
24997992
10.

Using PPI network autocorrelation in hierarchical multi-label classification trees for gene function prediction.

Stojanova D, Ceci M, Malerba D, Dzeroski S.

BMC Bioinformatics. 2013 Sep 26;14:285. doi: 10.1186/1471-2105-14-285.

11.

Changes of poultry faecal microbiota associated with Clostridium difficile colonisation.

Skraban J, Dzeroski S, Zenko B, Tusar L, Rupnik M.

Vet Microbiol. 2013 Aug 30;165(3-4):416-24. doi: 10.1016/j.vetmic.2013.04.014. Epub 2013 Apr 19.

PMID:
23664184
12.

Gut microbiota patterns associated with colonization of different Clostridium difficile ribotypes.

Skraban J, Dzeroski S, Zenko B, Mongus D, Gangl S, Rupnik M.

PLoS One. 2013;8(2):e58005. doi: 10.1371/journal.pone.0058005. Epub 2013 Feb 28.

13.

Neuroblastoma tumorigenesis is regulated through the Nm23-H1/h-Prune C-terminal interaction.

Carotenuto M, Pedone E, Diana D, de Antonellis P, Džeroski S, Marino N, Navas L, Di Dato V, Scoppettuolo MN, Cimmino F, Correale S, Pirone L, Monti SM, Bruder E, Zenko B, Slavkov I, Pastorino F, Ponzoni M, Schulte JH, Schramm A, Eggert A, Westermann F, Arrigoni G, Accordi B, Basso G, Saviano M, Fattorusso R, Zollo M.

Sci Rep. 2013;3:1351. doi: 10.1038/srep01351.

14.

A large-scale evaluation of computational protein function prediction.

Radivojac P, Clark WT, Oron TR, Schnoes AM, Wittkop T, Sokolov A, Graim K, Funk C, Verspoor K, Ben-Hur A, Pandey G, Yunes JM, Talwalkar AS, Repo S, Souza ML, Piovesan D, Casadio R, Wang Z, Cheng J, Fang H, Gough J, Koskinen P, Törönen P, Nokso-Koivisto J, Holm L, Cozzetto D, Buchan DW, Bryson K, Jones DT, Limaye B, Inamdar H, Datta A, Manjari SK, Joshi R, Chitale M, Kihara D, Lisewski AM, Erdin S, Venner E, Lichtarge O, Rentzsch R, Yang H, Romero AE, Bhat P, Paccanaro A, Hamp T, Kaßner R, Seemayer S, Vicedo E, Schaefer C, Achten D, Auer F, Boehm A, Braun T, Hecht M, Heron M, Hönigschmid P, Hopf TA, Kaufmann S, Kiening M, Krompass D, Landerer C, Mahlich Y, Roos M, Björne J, Salakoski T, Wong A, Shatkay H, Gatzmann F, Sommer I, Wass MN, Sternberg MJ, Škunca N, Supek F, Bošnjak M, Panov P, Džeroski S, Šmuc T, Kourmpetis YA, van Dijk AD, ter Braak CJ, Zhou Y, Gong Q, Dong X, Tian W, Falda M, Fontana P, Lavezzo E, Di Camillo B, Toppo S, Lan L, Djuric N, Guo Y, Vucetic S, Bairoch A, Linial M, Babbitt PC, Brenner SE, Orengo C, Rost B, Mooney SD, Friedberg I.

Nat Methods. 2013 Mar;10(3):221-7. doi: 10.1038/nmeth.2340. Epub 2013 Jan 27.

15.

Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships.

Skunca N, Bošnjak M, Kriško A, Panov P, Džeroski S, Smuc T, Supek F.

PLoS Comput Biol. 2013;9(1):e1002852. doi: 10.1371/journal.pcbi.1002852. Epub 2013 Jan 3.

16.

Using data mining to predict soil quality after application of biosolids in agriculture.

Cortet J, Kocev D, Ducobu C, Džeroski S, Debeljak M, Schwartz C.

J Environ Qual. 2011 Nov-Dec;40(6):1972-82. doi: 10.2134/jeq2011.0155.

PMID:
22031581
17.

Parameter estimation with bio-inspired meta-heuristic optimization: modeling the dynamics of endocytosis.

Tashkova K, Korošec P, Silc J, Todorovski L, Džeroski S.

BMC Syst Biol. 2011 Oct 11;5:159. doi: 10.1186/1752-0509-5-159.

18.

ADP-ribosylation factor guanine nucleotide-exchange factor 2 (ARFGEF2): a new potential biomarker in Huntington's disease.

Lovrecic L, Slavkov I, Dzeroski S, Peterlin B.

J Int Med Res. 2010 Sep-Oct;38(5):1653-62.

PMID:
21309479
19.

Finding explained groups of time-course gene expression profiles with predictive clustering trees.

Slavkov I, Gjorgjioski V, Struyf J, Dzeroski S.

Mol Biosyst. 2010 Apr;6(4):729-40. doi: 10.1039/b913690h. Epub 2010 Feb 19.

PMID:
20237651
20.

Predicting gene function using hierarchical multi-label decision tree ensembles.

Schietgat L, Vens C, Struyf J, Blockeel H, Kocev D, Dzeroski S.

BMC Bioinformatics. 2010 Jan 2;11:2. doi: 10.1186/1471-2105-11-2.

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