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Results: 1 to 20 of 46

1.

The draft genome sequence of European pear (Pyrus communis L. 'Bartlett').

Chagné D, Crowhurst RN, Pindo M, Thrimawithana A, Deng C, Ireland H, Fiers M, Dzierzon H, Cestaro A, Fontana P, Bianco L, Lu A, Storey R, Knäbel M, Saeed M, Montanari S, Kim YK, Nicolini D, Larger S, Stefani E, Allan AC, Bowen J, Harvey I, Johnston J, Malnoy M, Troggio M, Perchepied L, Sawyer G, Wiedow C, Won K, Viola R, Hellens RP, Brewer L, Bus VG, Schaffer RJ, Gardiner SE, Velasco R.

PLoS One. 2014 Apr 3;9(4):e92644. doi: 10.1371/journal.pone.0092644. eCollection 2014.

PMID:
24699266
[PubMed - in process]
Free PMC Article
2.

Local extinction and unintentional rewilding of bighorn sheep (Ovis canadensis) on a desert island.

Wilder BT, Betancourt JL, Epps CW, Crowhurst RS, Mead JI, Ezcurra E.

PLoS One. 2014 Mar 19;9(3):e91358. doi: 10.1371/journal.pone.0091358. eCollection 2014.

PMID:
24646515
[PubMed - in process]
Free PMC Article
3.

Combining transcriptome assemblies from multiple de novo assemblers in the allo-tetraploid plant Nicotiana benthamiana.

Nakasugi K, Crowhurst R, Bally J, Waterhouse P.

PLoS One. 2014 Mar 10;9(3):e91776. doi: 10.1371/journal.pone.0091776. eCollection 2014.

PMID:
24614631
[PubMed - in process]
Free PMC Article
4.

Identification of Pyrus single nucleotide polymorphisms (SNPs) and evaluation for genetic mapping in European pear and interspecific Pyrus hybrids.

Montanari S, Saeed M, Knäbel M, Kim Y, Troggio M, Malnoy M, Velasco R, Fontana P, Won K, Durel CE, Perchepied L, Schaffer R, Wiedow C, Bus V, Brewer L, Gardiner SE, Crowhurst RN, Chagné D.

PLoS One. 2013 Oct 14;8(10):e77022. doi: 10.1371/journal.pone.0077022. eCollection 2013.

PMID:
24155917
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

De novo transcriptome sequence assembly and analysis of RNA silencing genes of Nicotiana benthamiana.

Nakasugi K, Crowhurst RN, Bally J, Wood CC, Hellens RP, Waterhouse PM.

PLoS One. 2013;8(3):e59534. doi: 10.1371/journal.pone.0059534. Epub 2013 Mar 28.

PMID:
23555698
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Advanced engineering of lipid metabolism in Nicotiana benthamiana using a draft genome and the V2 viral silencing-suppressor protein.

Naim F, Nakasugi K, Crowhurst RN, Hilario E, Zwart AB, Hellens RP, Taylor JM, Waterhouse PM, Wood CC.

PLoS One. 2012;7(12):e52717. doi: 10.1371/journal.pone.0052717. Epub 2012 Dec 26.

PMID:
23300750
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A toolkit for bulk PCR-based marker design from next-generation sequence data: application for development of a framework linkage map in bulb onion (Allium cepa L.).

Baldwin S, Revanna R, Thomson S, Pither-Joyce M, Wright K, Crowhurst R, Fiers M, Chen L, Macknight R, McCallum JA.

BMC Genomics. 2012 Nov 19;13:637. doi: 10.1186/1471-2164-13-637.

PMID:
23157543
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

An ancient duplication of apple MYB transcription factors is responsible for novel red fruit-flesh phenotypes.

Chagné D, Lin-Wang K, Espley RV, Volz RK, How NM, Rouse S, Brendolise C, Carlisle CM, Kumar S, De Silva N, Micheletti D, McGhie T, Crowhurst RN, Storey RD, Velasco R, Hellens RP, Gardiner SE, Allan AC.

Plant Physiol. 2013 Jan;161(1):225-39. doi: 10.1104/pp.112.206771. Epub 2012 Oct 24.

PMID:
23096157
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genome-wide SNP detection, validation, and development of an 8K SNP array for apple.

Chagné D, Crowhurst RN, Troggio M, Davey MW, Gilmore B, Lawley C, Vanderzande S, Hellens RP, Kumar S, Cestaro A, Velasco R, Main D, Rees JD, Iezzoni A, Mockler T, Wilhelm L, Van de Weg E, Gardiner SE, Bassil N, Peace C.

PLoS One. 2012;7(2):e31745. doi: 10.1371/journal.pone.0031745. Epub 2012 Feb 21.

PMID:
22363718
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Comparative analysis of rosaceous genomes and the reconstruction of a putative ancestral genome for the family.

Illa E, Sargent DJ, Lopez Girona E, Bushakra J, Cestaro A, Crowhurst R, Pindo M, Cabrera A, van der Knaap E, Iezzoni A, Gardiner S, Velasco R, Arús P, Chagné D, Troggio M.

BMC Evol Biol. 2011 Jan 12;11:9. doi: 10.1186/1471-2148-11-9.

PMID:
21226921
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The genome of woodland strawberry (Fragaria vesca).

Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton JM, Rees DJ, Williams KP, Holt SH, Ruiz Rojas JJ, Chatterjee M, Liu B, Silva H, Meisel L, Adato A, Filichkin SA, Troggio M, Viola R, Ashman TL, Wang H, Dharmawardhana P, Elser J, Raja R, Priest HD, Bryant DW Jr, Fox SE, Givan SA, Wilhelm LJ, Naithani S, Christoffels A, Salama DY, Carter J, Lopez Girona E, Zdepski A, Wang W, Kerstetter RA, Schwab W, Korban SS, Davik J, Monfort A, Denoyes-Rothan B, Arus P, Mittler R, Flinn B, Aharoni A, Bennetzen JL, Salzberg SL, Dickerman AW, Velasco R, Borodovsky M, Veilleux RE, Folta KM.

Nat Genet. 2011 Feb;43(2):109-16. doi: 10.1038/ng.740. Epub 2010 Dec 26.

PMID:
21186353
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The genome of the domesticated apple (Malus × domestica Borkh.).

Velasco R, Zharkikh A, Affourtit J, Dhingra A, Cestaro A, Kalyanaraman A, Fontana P, Bhatnagar SK, Troggio M, Pruss D, Salvi S, Pindo M, Baldi P, Castelletti S, Cavaiuolo M, Coppola G, Costa F, Cova V, Dal Ri A, Goremykin V, Komjanc M, Longhi S, Magnago P, Malacarne G, Malnoy M, Micheletti D, Moretto M, Perazzolli M, Si-Ammour A, Vezzulli S, Zini E, Eldredge G, Fitzgerald LM, Gutin N, Lanchbury J, Macalma T, Mitchell JT, Reid J, Wardell B, Kodira C, Chen Z, Desany B, Niazi F, Palmer M, Koepke T, Jiwan D, Schaeffer S, Krishnan V, Wu C, Chu VT, King ST, Vick J, Tao Q, Mraz A, Stormo A, Stormo K, Bogden R, Ederle D, Stella A, Vecchietti A, Kater MM, Masiero S, Lasserre P, Lespinasse Y, Allan AC, Bus V, Chagné D, Crowhurst RN, Gleave AP, Lavezzo E, Fawcett JA, Proost S, Rouzé P, Sterck L, Toppo S, Lazzari B, Hellens RP, Durel CE, Gutin A, Bumgarner RE, Gardiner SE, Skolnick M, Egholm M, Van de Peer Y, Salamini F, Viola R.

Nat Genet. 2010 Oct;42(10):833-9. doi: 10.1038/ng.654. Epub 2010 Aug 29.

PMID:
20802477
[PubMed - indexed for MEDLINE]
13.

A gene-rich linkage map in the dioecious species Actinidia chinensis (kiwifruit) reveals putative X/Y sex-determining chromosomes.

Fraser LG, Tsang GK, Datson PM, De Silva HN, Harvey CF, Gill GP, Crowhurst RN, McNeilage MA.

BMC Genomics. 2009 Mar 10;10:102. doi: 10.1186/1471-2164-10-102.

PMID:
19284545
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Development of a set of SNP markers present in expressed genes of the apple.

Chagné D, Gasic K, Crowhurst RN, Han Y, Bassett HC, Bowatte DR, Lawrence TJ, Rikkerink EH, Gardiner SE, Korban SS.

Genomics. 2008 Nov;92(5):353-8. doi: 10.1016/j.ygeno.2008.07.008. Epub 2008 Sep 14.

PMID:
18721872
[PubMed - indexed for MEDLINE]
Free Article
15.

Analysis of expressed sequence tags from Actinidia: applications of a cross species EST database for gene discovery in the areas of flavor, health, color and ripening.

Crowhurst RN, Gleave AP, MacRae EA, Ampomah-Dwamena C, Atkinson RG, Beuning LL, Bulley SM, Chagne D, Marsh KB, Matich AJ, Montefiori M, Newcomb RD, Schaffer RJ, Usadel B, Allan AC, Boldingh HL, Bowen JH, Davy MW, Eckloff R, Ferguson AR, Fraser LG, Gera E, Hellens RP, Janssen BJ, Klages K, Lo KR, MacDiarmid RM, Nain B, McNeilage MA, Rassam M, Richardson AC, Rikkerink EH, Ross GS, Schröder R, Snowden KC, Souleyre EJ, Templeton MD, Walton EF, Wang D, Wang MY, Wang YY, Wood M, Wu R, Yauk YK, Laing WA.

BMC Genomics. 2008 Jul 27;9:351. doi: 10.1186/1471-2164-9-351.

PMID:
18655731
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Expressed sequence tags and proteomics of antennae from the tortricid moth, Epiphyas postvittana.

Jordan MD, Stanley D, Marshall SD, De Silva D, Crowhurst RN, Gleave AP, Greenwood DR, Newcomb RD.

Insect Mol Biol. 2008 Aug;17(4):361-73. doi: 10.1111/j.1365-2583.2008.00812.x.

PMID:
18651918
[PubMed - indexed for MEDLINE]
17.

Global gene expression analysis of apple fruit development from the floral bud to ripe fruit.

Janssen BJ, Thodey K, Schaffer RJ, Alba R, Balakrishnan L, Bishop R, Bowen JH, Crowhurst RN, Gleave AP, Ledger S, McArtney S, Pichler FB, Snowden KC, Ward S.

BMC Plant Biol. 2008 Feb 17;8:16. doi: 10.1186/1471-2229-8-16.

PMID:
18279528
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Expressed sequence tags from the midgut of Epiphyas postvittana (Walker) (Lepidoptera: Tortricidae).

Simpson RM, Newcomb RD, Gatehouse HS, Crowhurst RN, Chagné D, Gatehouse LN, Markwick NP, Beuning LL, Murray C, Marshall SD, Yauk YK, Nain B, Wang YY, Gleave AP, Christeller JT.

Insect Mol Biol. 2007 Dec;16(6):675-90.

PMID:
18092997
[PubMed - indexed for MEDLINE]
19.

Mapping a candidate gene (MdMYB10) for red flesh and foliage colour in apple.

Chagné D, Carlisle CM, Blond C, Volz RK, Whitworth CJ, Oraguzie NC, Crowhurst RN, Allan AC, Espley RV, Hellens RP, Gardiner SE.

BMC Genomics. 2007 Jul 3;8:212.

PMID:
17608951
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A genomics approach reveals that aroma production in apple is controlled by ethylene predominantly at the final step in each biosynthetic pathway.

Schaffer RJ, Friel EN, Souleyre EJ, Bolitho K, Thodey K, Ledger S, Bowen JH, Ma JH, Nain B, Cohen D, Gleave AP, Crowhurst RN, Janssen BJ, Yao JL, Newcomb RD.

Plant Physiol. 2007 Aug;144(4):1899-912. Epub 2007 Jun 7.

PMID:
17556515
[PubMed - indexed for MEDLINE]
Free PMC Article

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