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Results: 1 to 20 of 45

1.

An empirical evaluation of two-stage species tree inference strategies using a multilocus dataset from North American pines.

DeGiorgio M, Syring J, Eckert AJ, Liston A, Cronn R, Neale DB, Rosenberg NA.

BMC Evol Biol. 2014 Mar 29;14:67. doi: 10.1186/1471-2148-14-67.

PMID:
24678701
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Horizontal transfer of DNA from the mitochondrial to the plastid genome and its subsequent evolution in milkweeds (apocynaceae).

Straub SC, Cronn RC, Edwards C, Fishbein M, Liston A.

Genome Biol Evol. 2013;5(10):1872-85. doi: 10.1093/gbe/evt140.

PMID:
24029811
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation.

Howe GT, Yu J, Knaus B, Cronn R, Kolpak S, Dolan P, Lorenz WW, Dean JF.

BMC Genomics. 2013 Feb 28;14:137. doi: 10.1186/1471-2164-14-137.

PMID:
23445355
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Low diversity in the mitogenome of sperm whales revealed by next-generation sequencing.

Alexander A, Steel D, Slikas B, Hoekzema K, Carraher C, Parks M, Cronn R, Baker CS.

Genome Biol Evol. 2013;5(1):113-29. doi: 10.1093/gbe/evs126.

PMID:
23254394
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing.

Njuguna W, Liston A, Cronn R, Ashman TL, Bassil N.

Mol Phylogenet Evol. 2013 Jan;66(1):17-29. doi: 10.1016/j.ympev.2012.08.026. Epub 2012 Sep 14.

PMID:
22982444
[PubMed - indexed for MEDLINE]
6.

Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae).

Parks M, Cronn R, Liston A.

BMC Evol Biol. 2012 Jun 25;12:100. doi: 10.1186/1471-2148-12-100.

PMID:
22731878
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Targeted enrichment strategies for next-generation plant biology.

Cronn R, Knaus BJ, Liston A, Maughan PJ, Parks M, Syring JV, Udall J.

Am J Bot. 2012 Feb;99(2):291-311. doi: 10.3732/ajb.1100356. Epub 2012 Feb 6.

PMID:
22312117
[PubMed - indexed for MEDLINE]
Free Article
8.

Navigating the tip of the genomic iceberg: Next-generation sequencing for plant systematics.

Straub SC, Parks M, Weitemier K, Fishbein M, Cronn RC, Liston A.

Am J Bot. 2012 Feb;99(2):349-64. doi: 10.3732/ajb.1100335. Epub 2011 Dec 14.

PMID:
22174336
[PubMed - indexed for MEDLINE]
Free Article
9.

Microsatellite primers for the Pacific Northwest endemic conifer Chamaecyparis lawsoniana (Cupressaceae).

Jennings TN, Knaus BJ, Kolpak S, Cronn R.

Am J Bot. 2011 Nov;98(11):e323-5. doi: 10.3732/ajb.1100317. Epub 2011 Oct 19.

PMID:
22012929
[PubMed - indexed for MEDLINE]
Free Article
10.

Transcriptome characterization and polymorphism detection between subspecies of big sagebrush (Artemisia tridentata).

Bajgain P, Richardson BA, Price JC, Cronn RC, Udall JA.

BMC Genomics. 2011 Jul 18;12:370. doi: 10.1186/1471-2164-12-370.

PMID:
21767398
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Newly developed primers for complete ycf1 amplification in Pinus (Pinaceae) chloroplasts with possible family-wide utility.

Parks M, Liston A, Cronn R.

Am J Bot. 2011 Jul;98(7):e185-8. doi: 10.3732/ajb.1100088. Epub 2011 Jun 17.

PMID:
21730332
[PubMed - indexed for MEDLINE]
Free Article
12.

Multiplexed microsatellite recovery using massively parallel sequencing.

Jennings TN, Knaus BJ, Mullins TD, Haig SM, Cronn RC.

Mol Ecol Resour. 2011 Nov;11(6):1060-7. doi: 10.1111/j.1755-0998.2011.03033.x. Epub 2011 Jun 16.

PMID:
21676207
[PubMed - indexed for MEDLINE]
13.

Development of novel chloroplast microsatellite markers to identify species in the Agrostis complex (Poaceae) and related genera.

Zapiola ML, Cronn RC, Mallory-Smith CA.

Mol Ecol Resour. 2010 Jul;10(4):738-40. doi: 10.1111/j.1755-0998.2009.02828.x. Epub 2010 Jan 20.

PMID:
21565082
[PubMed]
14.

Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing.

Straub SC, Fishbein M, Livshultz T, Foster Z, Parks M, Weitemier K, Cronn RC, Liston A.

BMC Genomics. 2011 May 4;12:211. doi: 10.1186/1471-2164-12-211.

PMID:
21542930
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore.

Knaus BJ, Cronn R, Liston A, Pilgrim K, Schwartz MK.

BMC Ecol. 2011 Apr 20;11:10. doi: 10.1186/1472-6785-11-10.

PMID:
21507265
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Adventures in the enormous: a 1.8 million clone BAC library for the 21.7 Gb genome of loblolly pine.

Magbanua ZV, Ozkan S, Bartlett BD, Chouvarine P, Saski CA, Liston A, Cronn RC, Nelson CD, Peterson DG.

PLoS One. 2011 Jan 21;6(1):e16214. doi: 10.1371/journal.pone.0016214.

PMID:
21283709
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines.

Whittall JB, Syring J, Parks M, Buenrostro J, Dick C, Liston A, Cronn R.

Mol Ecol. 2010 Mar;19 Suppl 1:100-14. doi: 10.1111/j.1365-294X.2009.04474.x.

PMID:
20331774
[PubMed - indexed for MEDLINE]
18.

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes.

Parks M, Cronn R, Liston A.

BMC Biol. 2009 Dec 2;7:84. doi: 10.1186/1741-7007-7-84.

PMID:
19954512
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Tangled trios?: Characterizing a hybrid zone in Castilleja (Orobanchaceae).

Hersch-Green EI, Cronn R.

Am J Bot. 2009 Aug;96(8):1519-31. doi: 10.3732/ajb.0800357. Epub 2009 Jul 6.

PMID:
21628297
[PubMed]
Free Article
20.

Reticulate evolution and incomplete lineage sorting among the ponderosa pines.

Willyard A, Cronn R, Liston A.

Mol Phylogenet Evol. 2009 Aug;52(2):498-511. doi: 10.1016/j.ympev.2009.02.011. Epub 2009 Feb 26.

PMID:
19249377
[PubMed - indexed for MEDLINE]

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