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Items: 1 to 20 of 36


Temporal dynamics of the metabolically active rumen bacteria colonizing fresh perennial ryegrass.

Huws SA, Edwards JE, Creevey CJ, Rees Stevens P, Lin W, Girdwood SE, Pachebat JA, Kingston-Smith AH.

FEMS Microbiol Ecol. 2016 Jan;92(1). pii: fiv137. doi: 10.1093/femsec/fiv137. Epub 2015 Nov 4.


Implementing and testing Bayesian and maximum-likelihood supertree methods in phylogenetics.

Akanni WA, Wilkinson M, Creevey CJ, Foster PG, Pisani D.

R Soc Open Sci. 2015 Aug 5;2(8):140436. doi: 10.1098/rsos.140436. eCollection 2015 Aug.


Horizontal gene flow from Eubacteria to Archaebacteria and what it means for our understanding of eukaryogenesis.

Akanni WA, Siu-Ting K, Creevey CJ, McInerney JO, Wilkinson M, Foster PG, Pisani D.

Philos Trans R Soc Lond B Biol Sci. 2015 Sep 26;370(1678):20140337. doi: 10.1098/rstb.2014.0337.


Differential gene expression in the endometrium reveals cytoskeletal and immunological genes in lactating dairy cows genetically divergent for fertility traits.

Moran B, Butler ST, Moore SG, MacHugh DE, Creevey CJ.

Reprod Fertil Dev. 2015 Aug 25. doi: 10.1071/RD15128. [Epub ahead of print]


Fertility and genomics: comparison of gene expression in contrasting reproductive tissues of female cattle.

McGettigan PA, Browne JA, Carrington SD, Crowe MA, Fair T, Forde N, Loftus BJ, Lohan A, Lonergan P, Pluta K, Mamo S, Murphy A, Roche J, Walsh SW, Creevey CJ, Earley B, Keady S, Kenny DA, Matthews D, McCabe M, Morris D, O'Loughlin A, Waters S, Diskin MG, Evans AC.

Reprod Fertil Dev. 2015 Feb;28(2):11-24. doi: 10.1071/RD15354.


Diversity and community composition of methanogenic archaea in the rumen of Scottish upland sheep assessed by different methods.

Snelling TJ, Genç B, McKain N, Watson M, Waters SM, Creevey CJ, Wallace RJ.

PLoS One. 2014 Sep 24;9(9):e106491. doi: 10.1371/journal.pone.0106491. eCollection 2014.


Mitochondrial data are not suitable for resolving placental mammal phylogeny.

Morgan CC, Creevey CJ, O'Connell MJ.

Mamm Genome. 2014 Dec;25(11-12):636-47. doi: 10.1007/s00335-014-9544-9. Epub 2014 Sep 20.


Concatabominations: identifying unstable taxa in morphological phylogenetics using a heuristic extension to safe taxonomic reduction.

Siu-Ting K, Pisani D, Creevey CJ, Wilkinson M.

Syst Biol. 2015 Jan;64(1):137-43. doi: 10.1093/sysbio/syu066. Epub 2014 Sep 2. No abstract available.


Determining the culturability of the rumen bacterial microbiome.

Creevey CJ, Kelly WJ, Henderson G, Leahy SC.

Microb Biotechnol. 2014 Sep;7(5):467-79. doi: 10.1111/1751-7915.12141. Epub 2014 Jul 1.


L.U.St: a tool for approximated maximum likelihood supertree reconstruction.

Akanni WA, Creevey CJ, Wilkinson M, Pisani D.

BMC Bioinformatics. 2014 Jun 12;15:183. doi: 10.1186/1471-2105-15-183.


Metasecretome-selective phage display approach for mining the functional potential of a rumen microbial community.

Ciric M, Moon CD, Leahy SC, Creevey CJ, Altermann E, Attwood GT, Rakonjac J, Gagic D.

BMC Genomics. 2014 May 12;15:356. doi: 10.1186/1471-2164-15-356.


Genome sequence of Ensifer adhaerens OV14 provides insights into its ability as a novel vector for the genetic transformation of plant genomes.

Rudder S, Doohan F, Creevey CJ, Wendt T, Mullins E.

BMC Genomics. 2014 Apr 7;15:268. doi: 10.1186/1471-2164-15-268.


Rumen methanogenic genotypes differ in abundance according to host residual feed intake phenotype and diet type.

Carberry CA, Waters SM, Kenny DA, Creevey CJ.

Appl Environ Microbiol. 2014 Jan;80(2):586-94. doi: 10.1128/AEM.03131-13. Epub 2013 Nov 8. Erratum in: Appl Environ Microbiol. 2014 Mar;80(6):2039. Waters, Sinead M [corrected to Waters, Sinéad M].


Snpdat: easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms.

Doran AG, Creevey CJ.

BMC Bioinformatics. 2013 Feb 8;14:45. doi: 10.1186/1471-2105-14-45.


Global endometrial transcriptomic profiling: transient immune activation precedes tissue proliferation and repair in healthy beef cows.

Foley C, Chapwanya A, Creevey CJ, Narciandi F, Morris D, Kenny EM, Cormican P, Callanan JJ, O'Farrelly C, Meade KG.

BMC Genomics. 2012 Sep 18;13:489. doi: 10.1186/1471-2164-13-489.


The integration of 'omic' disciplines and systems biology in cattle breeding.

Berry DP, Meade KG, Mullen MP, Butler S, Diskin MG, Morris D, Creevey CJ.

Animal. 2011 Feb;5(4):493-505. doi: 10.1017/S1751731110002120.


Polymorphism discovery and allele frequency estimation using high-throughput DNA sequencing of target-enriched pooled DNA samples.

Mullen MP, Creevey CJ, Berry DP, McCabe MS, Magee DA, Howard DJ, Killeen AP, Park SD, McGettigan PA, Lucy MC, Machugh DE, Waters SM.

BMC Genomics. 2012 Jan 11;13:16. doi: 10.1186/1471-2164-13-16.


Identifying single copy orthologs in Metazoa.

Creevey CJ, Muller J, Doerks T, Thompson JD, Arendt D, Bork P.

PLoS Comput Biol. 2011 Dec;7(12):e1002269. doi: 10.1371/journal.pcbi.1002269. Epub 2011 Dec 1.


Universally distributed single-copy genes indicate a constant rate of horizontal transfer.

Creevey CJ, Doerks T, Fitzpatrick DA, Raes J, Bork P.

PLoS One. 2011;6(8):e22099. doi: 10.1371/journal.pone.0022099. Epub 2011 Aug 5.

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