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Results: 1 to 20 of 39


Diversity and community composition of methanogenic archaea in the rumen of Scottish upland sheep assessed by different methods.

Snelling TJ, Genç B, McKain N, Watson M, Waters SM, Creevey CJ, Wallace RJ.

PLoS One. 2014 Sep 24;9(9):e106491. doi: 10.1371/journal.pone.0106491. eCollection 2014.


Mitochondrial data are not suitable for resolving placental mammal phylogeny.

Morgan CC, Creevey CJ, O'Connell MJ.

Mamm Genome. 2014 Dec;25(11-12):636-47. doi: 10.1007/s00335-014-9544-9. Epub 2014 Sep 20.


Concatabominations: identifying unstable taxa in morphological phylogenetics using a heuristic extension to safe taxonomic reduction.

Siu-Ting K, Pisani D, Creevey CJ, Wilkinson M.

Syst Biol. 2015 Jan;64(1):137-43. doi: 10.1093/sysbio/syu066. Epub 2014 Sep 2. No abstract available.


Determining the culturability of the rumen bacterial microbiome.

Creevey CJ, Kelly WJ, Henderson G, Leahy SC.

Microb Biotechnol. 2014 Sep;7(5):467-79. doi: 10.1111/1751-7915.12141. Epub 2014 Jul 1.


L.U.St: a tool for approximated maximum likelihood supertree reconstruction.

Akanni WA, Creevey CJ, Wilkinson M, Pisani D.

BMC Bioinformatics. 2014 Jun 12;15:183. doi: 10.1186/1471-2105-15-183.


Metasecretome-selective phage display approach for mining the functional potential of a rumen microbial community.

Ciric M, Moon CD, Leahy SC, Creevey CJ, Altermann E, Attwood GT, Rakonjac J, Gagic D.

BMC Genomics. 2014 May 12;15:356. doi: 10.1186/1471-2164-15-356.


Genome sequence of Ensifer adhaerens OV14 provides insights into its ability as a novel vector for the genetic transformation of plant genomes.

Rudder S, Doohan F, Creevey CJ, Wendt T, Mullins E.

BMC Genomics. 2014 Apr 7;15:268. doi: 10.1186/1471-2164-15-268.


eggNOG v4.0: nested orthology inference across 3686 organisms.

Powell S, Forslund K, Szklarczyk D, Trachana K, Roth A, Huerta-Cepas J, Gabaldón T, Rattei T, Creevey C, Kuhn M, Jensen LJ, von Mering C, Bork P.

Nucleic Acids Res. 2014 Jan;42(Database issue):D231-9. doi: 10.1093/nar/gkt1253. Epub 2013 Dec 1.


Rumen methanogenic genotypes differ in abundance according to host residual feed intake phenotype and diet type.

Carberry CA, Waters SM, Kenny DA, Creevey CJ.

Appl Environ Microbiol. 2014 Jan;80(2):586-94. doi: 10.1128/AEM.03131-13. Epub 2013 Nov 8. Erratum in: Appl Environ Microbiol. 2014 Mar;80(6):2039. Waters, Sinead M [corrected to Waters, Sinéad M].


Snpdat: easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms.

Doran AG, Creevey CJ.

BMC Bioinformatics. 2013 Feb 8;14:45. doi: 10.1186/1471-2105-14-45.


Consistent mutational paths predict eukaryotic thermostability.

van Noort V, Bradatsch B, Arumugam M, Amlacher S, Bange G, Creevey C, Falk S, Mende DR, Sinning I, Hurt E, Bork P.

BMC Evol Biol. 2013 Jan 10;13:7. doi: 10.1186/1471-2148-13-7.


Global endometrial transcriptomic profiling: transient immune activation precedes tissue proliferation and repair in healthy beef cows.

Foley C, Chapwanya A, Creevey CJ, Narciandi F, Morris D, Kenny EM, Cormican P, Callanan JJ, O'Farrelly C, Meade KG.

BMC Genomics. 2012 Sep 18;13:489. doi: 10.1186/1471-2164-13-489.


RNA-seq analysis of differential gene expression in liver from lactating dairy cows divergent in negative energy balance.

McCabe M, Waters S, Morris D, Kenny D, Lynn D, Creevey C.

BMC Genomics. 2012 May 20;13:193. doi: 10.1186/1471-2164-13-193.


The integration of 'omic' disciplines and systems biology in cattle breeding.

Berry DP, Meade KG, Mullen MP, Butler S, Diskin MG, Morris D, Creevey CJ.

Animal. 2011 Feb;5(4):493-505. doi: 10.1017/S1751731110002120.


Polymorphism discovery and allele frequency estimation using high-throughput DNA sequencing of target-enriched pooled DNA samples.

Mullen MP, Creevey CJ, Berry DP, McCabe MS, Magee DA, Howard DJ, Killeen AP, Park SD, McGettigan PA, Lucy MC, Machugh DE, Waters SM.

BMC Genomics. 2012 Jan 11;13:16. doi: 10.1186/1471-2164-13-16.


Identifying single copy orthologs in Metazoa.

Creevey CJ, Muller J, Doerks T, Thompson JD, Arendt D, Bork P.

PLoS Comput Biol. 2011 Dec;7(12):e1002269. doi: 10.1371/journal.pcbi.1002269. Epub 2011 Dec 1.


Universally distributed single-copy genes indicate a constant rate of horizontal transfer.

Creevey CJ, Doerks T, Fitzpatrick DA, Raes J, Bork P.

PLoS One. 2011;6(8):e22099. doi: 10.1371/journal.pone.0022099. Epub 2011 Aug 5.


Duplicate retention in signalling proteins and constraints from network dynamics.

Soyer OS, Creevey CJ.

J Evol Biol. 2010 Nov;23(11):2410-21. doi: 10.1111/j.1420-9101.2010.02101.x. Epub 2010 Sep 6.


Visualization of multiple alignments, phylogenies and gene family evolution.

Procter JB, Thompson J, Letunic I, Creevey C, Jossinet F, Barton GJ.

Nat Methods. 2010 Mar;7(3 Suppl):S16-25. doi: 10.1038/nmeth.1434. Review.

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