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Results: 1 to 20 of 57

1.

Mitochondrial DNA and the Y chromosome suggest the settlement of Madagascar by Indonesian sea nomad populations.

Kusuma P, Cox MP, Pierron D, Razafindrazaka H, Brucato N, Tonasso L, Suryadi HL, Letellier T, Sudoyo H, Ricaut FX.

BMC Genomics. 2015 Mar 17;16:191. doi: 10.1186/s12864-015-1394-7.

2.

Reconstructing Past Admixture Processes from Local Genomic Ancestry Using Wavelet Transformation.

Sanderson J, Sudoyo H, Karafet TM, Hammer MF, Cox MP.

Genetics. 2015 Apr 7. pii: genetics.115.176842. [Epub ahead of print]

3.

Clean Graphene Electrodes on Organic Thin-Film Devices via Orthogonal Fluorinated Chemistry.

Beck JH, Barton RA, Cox MP, Alexandrou K, Petrone N, Olivieri G, Yang S, Hone J, Kymissis I.

Nano Lett. 2015 Apr 8;15(4):2555-61. doi: 10.1021/acs.nanolett.5b00110. Epub 2015 Mar 23.

PMID:
25774924
4.

A recent bottleneck of Y chromosome diversity coincides with a global change in culture.

Karmin M, Saag L, Vicente M, Wilson Sayres MA, Järve M, Talas UG, Rootsi S, Ilumäe AM, Mägi R, Mitt M, Pagani L, Puurand T, Faltyskova Z, Clemente F, Cardona A, Metspalu E, Sahakyan H, Yunusbayev B, Hudjashov G, DeGiorgio M, Loogväli EL, Eichstaedt C, Eelmets M, Chaubey G, Tambets K, Litvinov S, Mormina M, Xue Y, Ayub Q, Zoraqi G, Korneliussen TS, Akhatova F, Lachance J, Tishkoff S, Momynaliev K, Ricaut FX, Kusuma P, Razafindrazaka H, Pierron D, Cox MP, Sultana GN, Willerslev R, Muller C, Westaway M, Lambert D, Skaro V, Kovačevic L, Turdikulova S, Dalimova D, Khusainova R, Trofimova N, Akhmetova V, Khidiyatova I, Lichman DV, Isakova J, Pocheshkhova E, Sabitov Z, Barashkov NA, Nymadawa P, Mihailov E, Seng JW, Evseeva I, Migliano AB, Abdullah S, Andriadze G, Primorac D, Atramentova L, Utevska O, Yepiskoposyan L, Marjanovic D, Kushniarevich A, Behar DM, Gilissen C, Vissers L, Veltman JA, Balanovska E, Derenko M, Malyarchuk B, Metspalu A, Fedorova S, Eriksson A, Manica A, Mendez FL, Karafet TM, Veeramah KR, Bradman N, Hammer MF, Osipova LP, Balanovsky O, Khusnutdinova EK, Johnsen K, Remm M, Thomas MG, Tyler-Smith C, Underhill PA, Willerslev E, Nielsen R, Metspalu M, Villems R, Kivisild T.

Genome Res. 2015 Apr;25(4):459-66. doi: 10.1101/gr.186684.114. Epub 2015 Mar 13.

PMID:
25770088
5.

Draft Genome Sequence of the Filamentous Fungus Penicillium paxilli (ATCC 26601).

Berry D, Cox MP, Scott B.

Genome Announc. 2015 Mar 12;3(2). pii: e00071-15. doi: 10.1128/genomeA.00071-15.

6.

HyLiTE: accurate and flexible analysis of gene expression in hybrid and allopolyploid species.

Duchemin W, Dupont PY, Campbell MA, Ganley AR, Cox MP.

BMC Bioinformatics. 2015 Jan 16;16(1):8. doi: 10.1186/s12859-014-0433-8.

7.

A Core Gene Set Describes the Molecular Basis of Mutualism and Antagonism in Epichloë spp.

Eaton CJ, Dupont PY, Solomon P, Clayton W, Scott B, Cox MP.

Mol Plant Microbe Interact. 2015 Mar;28(3):218-31. doi: 10.1094/MPMI-09-14-0293-FI.

8.
9.

Isolation, contact and social behavior shaped genetic diversity in West Timor.

Tumonggor MK, Karafet TM, Downey S, Lansing JS, Norquest P, Sudoyo H, Hammer MF, Cox MP.

J Hum Genet. 2014 Sep;59(9):494-503. doi: 10.1038/jhg.2014.62. Epub 2014 Jul 31.

PMID:
25078354
10.

Regime shifts in Balinese subaks.

Lansing JS, Cheong SA, Chew LY, Cox MP, Ho MH, Arthawiguna WA.

Curr Anthropol. 2014 Apr;55(2):232-9. No abstract available.

PMID:
24991686
11.

SMARTPOP: inferring the impact of social dynamics on genetic diversity through high speed simulations.

Guillot EG, Cox MP.

BMC Bioinformatics. 2014 Jun 9;15:175. doi: 10.1186/1471-2105-15-175.

12.

An interspecific fungal hybrid reveals cross-kingdom rules for allopolyploid gene expression patterns.

Cox MP, Dong T, Shen G, Dalvi Y, Scott DB, Ganley AR.

PLoS Genet. 2014 Mar 6;10(3):e1004180. doi: 10.1371/journal.pgen.1004180. eCollection 2014 Mar.

13.

Semi-automatic selection of summary statistics for ABC model choice.

Prangle D, Fearnhead P, Cox MP, Biggs PJ, French NP.

Stat Appl Genet Mol Biol. 2014 Feb;13(1):67-82. doi: 10.1515/sagmb-2013-0012.

PMID:
24323893
14.

Climate change influenced female population sizes through time across the Indonesian archipelago.

Guillot EG, Tumonggor MK, Lansing JS, Sudoyo H, Cox MP.

Hum Biol. 2013 Feb-Jun;85(1-3):135-52.

PMID:
24297223
15.

Inexpensive photonic crystal spectrometer for colorimetric sensing applications.

Bryan KM, Jia Z, Pervez NK, Cox MP, Gazes MJ, Kymissis I.

Opt Express. 2013 Feb 25;21(4):4411-23. doi: 10.1364/OE.21.004411.

PMID:
23481975
16.

Fragmentation of an aflatoxin-like gene cluster in a forest pathogen.

Bradshaw RE, Slot JC, Moore GG, Chettri P, de Wit PJ, Ehrlich KC, Ganley AR, Olson MA, Rokas A, Carbone I, Cox MP.

New Phytol. 2013 Apr;198(2):525-35. doi: 10.1111/nph.12161. Epub 2013 Mar 1.

PMID:
23448391
17.

Reconstructing past changes in locus-specific recombination rates.

Cox MP, Holland BR, Wilkins MC, Schmid J.

BMC Genet. 2013 Feb 25;14:11. doi: 10.1186/1471-2156-14-11.

18.

The Indonesian archipelago: an ancient genetic highway linking Asia and the Pacific.

Tumonggor MK, Karafet TM, Hallmark B, Lansing JS, Sudoyo H, Hammer MF, Cox MP.

J Hum Genet. 2013 Mar;58(3):165-73. doi: 10.1038/jhg.2012.154. Epub 2013 Jan 24.

PMID:
23344321
19.

The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry.

de Wit PJ, van der Burgt A, Ökmen B, Stergiopoulos I, Abd-Elsalam KA, Aerts AL, Bahkali AH, Beenen HG, Chettri P, Cox MP, Datema E, de Vries RP, Dhillon B, Ganley AR, Griffiths SA, Guo Y, Hamelin RC, Henrissat B, Kabir MS, Jashni MK, Kema G, Klaubauf S, Lapidus A, Levasseur A, Lindquist E, Mehrabi R, Ohm RA, Owen TJ, Salamov A, Schwelm A, Schijlen E, Sun H, van den Burg HA, van Ham RC, Zhang S, Goodwin SB, Grigoriev IV, Collemare J, Bradshaw RE.

PLoS Genet. 2012;8(11):e1003088. doi: 10.1371/journal.pgen.1003088. Epub 2012 Nov 29.

20.

Dothistromin genes at multiple separate loci are regulated by AflR.

Chettri P, Ehrlich KC, Cary JW, Collemare J, Cox MP, Griffiths SA, Olson MA, de Wit PJ, Bradshaw RE.

Fungal Genet Biol. 2013 Feb;51:12-20. doi: 10.1016/j.fgb.2012.11.006. Epub 2012 Dec 1.

PMID:
23207690
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