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Items: 1 to 20 of 79

1.

"Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run".

Doidy J, Li Y, Neymotin B, Edwards MB, Varala K, Gresham D, Coruzzi GM.

BMC Genomics. 2016 Feb 3;17:92. doi: 10.1186/s12864-016-2410-2.

2.

Long-distance nitrate signaling displays cytokinin dependent and independent branches.

Ruffel S, Poitout A, Krouk G, Coruzzi GM, Lacombe B.

J Integr Plant Biol. 2016 Mar;58(3):226-9. doi: 10.1111/jipb.12453. Epub 2016 Feb 23.

PMID:
26619818
3.

"Hit-and-Run" leaves its mark: catalyst transcription factors and chromatin modification.

Varala K, Li Y, Marshall-Colón A, Para A, Coruzzi GM.

Bioessays. 2015 Aug;37(8):851-6. doi: 10.1002/bies.201400205. Epub 2015 Jun 23. Review.

4.

From milliseconds to lifetimes: tracking the dynamic behavior of transcription factors in gene networks.

Li Y, Varala K, Coruzzi GM.

Trends Genet. 2015 Sep;31(9):509-15. doi: 10.1016/j.tig.2015.05.005. Epub 2015 Jun 10. Review.

PMID:
26072453
5.

Cross-Species Network Analysis Uncovers Conserved Nitrogen-Regulated Network Modules in Rice.

Obertello M, Shrivastava S, Katari MS, Coruzzi GM.

Plant Physiol. 2015 Aug;168(4):1830-43. doi: 10.1104/pp.114.255877. Epub 2015 Jun 4.

6.

The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants.

Li Y, Mukherjee I, Thum KE, Tanurdzic M, Katari MS, Obertello M, Edwards MB, McCombie WR, Martienssen RA, Coruzzi GM.

Genome Biol. 2015 Apr 19;16:79. doi: 10.1186/s13059-015-0640-2.

7.

AtNIGT1/HRS1 integrates nitrate and phosphate signals at the Arabidopsis root tip.

Medici A, Marshall-Colon A, Ronzier E, Szponarski W, Wang R, Gojon A, Crawford NM, Ruffel S, Coruzzi GM, Krouk G.

Nat Commun. 2015 Feb 27;6:6274. doi: 10.1038/ncomms7274.

8.

Comparative phylogenomics uncovers the impact of symbiotic associations on host genome evolution.

Delaux PM, Varala K, Edger PP, Coruzzi GM, Pires JC, Ané JM.

PLoS Genet. 2014 Jul 17;10(7):e1004487. doi: 10.1371/journal.pgen.1004487. eCollection 2014 Jul.

9.

Finding a nitrogen niche: a systems integration of local and systemic nitrogen signalling in plants.

Li Y, Krouk G, Coruzzi GM, Ruffel S.

J Exp Bot. 2014 Oct;65(19):5601-10. doi: 10.1093/jxb/eru263. Epub 2014 Jun 24. Review.

10.

Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis.

Para A, Li Y, Marshall-Colón A, Varala K, Francoeur NJ, Moran TM, Edwards MB, Hackley C, Bargmann BO, Birnbaum KD, McCombie WR, Krouk G, Coruzzi GM.

Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):10371-6. doi: 10.1073/pnas.1404657111. Epub 2014 Jun 23.

11.

Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.

Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA.

BMC Genomics. 2013 Oct 11;14:701. doi: 10.1186/1471-2164-14-701.

12.

Plasticity regulators modulate specific root traits in discrete nitrogen environments.

Gifford ML, Banta JA, Katari MS, Hulsmans J, Chen L, Ristova D, Tranchina D, Purugganan MD, Coruzzi GM, Birnbaum KD.

PLoS Genet. 2013;9(9):e1003760. doi: 10.1371/journal.pgen.1003760. Epub 2013 Sep 5.

13.

Integration of responses within and across Arabidopsis natural accessions uncovers loci controlling root systems architecture.

Rosas U, Cibrian-Jaramillo A, Ristova D, Banta JA, Gifford ML, Fan AH, Zhou RW, Kim GJ, Krouk G, Birnbaum KD, Purugganan MD, Coruzzi GM.

Proc Natl Acad Sci U S A. 2013 Sep 10;110(37):15133-8. doi: 10.1073/pnas.1305883110. Epub 2013 Aug 26. Partial retraction in: Proc Natl Acad Sci U S A. 2015 May 12;112(19):E2555.

14.

TARGET: a transient transformation system for genome-wide transcription factor target discovery.

Bargmann BO, Marshall-Colon A, Efroni I, Ruffel S, Birnbaum KD, Coruzzi GM, Krouk G.

Mol Plant. 2013 May;6(3):978-80. doi: 10.1093/mp/sst010. Epub 2013 Jan 18. No abstract available.

15.

RootScape: a landmark-based system for rapid screening of root architecture in Arabidopsis.

Ristova D, Rosas U, Krouk G, Ruffel S, Birnbaum KD, Coruzzi GM.

Plant Physiol. 2013 Mar;161(3):1086-96. doi: 10.1104/pp.112.210872. Epub 2013 Jan 18.

16.

Nitrogen economics of root foraging: transitive closure of the nitrate-cytokinin relay and distinct systemic signaling for N supply vs. demand.

Ruffel S, Krouk G, Ristova D, Shasha D, Birnbaum KD, Coruzzi GM.

Proc Natl Acad Sci U S A. 2011 Nov 8;108(45):18524-9. doi: 10.1073/pnas.1108684108. Epub 2011 Oct 24.

17.

High nitrogen insensitive 9 (HNI9)-mediated systemic repression of root NO3- uptake is associated with changes in histone methylation.

Widiez T, El Kafafi el S, Girin T, Berr A, Ruffel S, Krouk G, Vayssières A, Shen WH, Coruzzi GM, Gojon A, Lepetit M.

Proc Natl Acad Sci U S A. 2011 Aug 9;108(32):13329-34. doi: 10.1073/pnas.1017863108. Epub 2011 Jul 25.

18.

A framework integrating plant growth with hormones and nutrients.

Krouk G, Ruffel S, Gutiérrez RA, Gojon A, Crawford NM, Coruzzi GM, Lacombe B.

Trends Plant Sci. 2011 Apr;16(4):178-82. doi: 10.1016/j.tplants.2011.02.004. Epub 2011 Mar 9.

PMID:
21393048
19.

Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate.

Krouk G, Mirowski P, LeCun Y, Shasha DE, Coruzzi GM.

Genome Biol. 2010;11(12):R123. doi: 10.1186/gb-2010-11-12-r123. Epub 2010 Dec 23.

20.

Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis.

Obertello M, Krouk G, Katari MS, Runko SJ, Coruzzi GM.

BMC Syst Biol. 2010 Aug 12;4:111. doi: 10.1186/1752-0509-4-111.

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