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Results: 1 to 20 of 72

1.

Comparative phylogenomics uncovers the impact of symbiotic associations on host genome evolution.

Delaux PM, Varala K, Edger PP, Coruzzi GM, Pires JC, Ané JM.

PLoS Genet. 2014 Jul 17;10(7):e1004487. doi: 10.1371/journal.pgen.1004487. eCollection 2014 Jul.

PMID:
25032823
[PubMed - in process]
Free PMC Article
2.

Finding a nitrogen niche: a systems integration of local and systemic nitrogen signalling in plants.

Li Y, Krouk G, Coruzzi GM, Ruffel S.

J Exp Bot. 2014 Oct;65(19):5601-10. doi: 10.1093/jxb/eru263. Epub 2014 Jun 24.

PMID:
24963003
[PubMed - in process]
3.

Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis.

Para A, Li Y, Marshall-Colón A, Varala K, Francoeur NJ, Moran TM, Edwards MB, Hackley C, Bargmann BO, Birnbaum KD, McCombie WR, Krouk G, Coruzzi GM.

Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):10371-6. doi: 10.1073/pnas.1404657111. Epub 2014 Jun 23.

PMID:
24958886
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.

Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA.

BMC Genomics. 2013 Oct 11;14:701. doi: 10.1186/1471-2164-14-701.

PMID:
24119003
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Plasticity regulators modulate specific root traits in discrete nitrogen environments.

Gifford ML, Banta JA, Katari MS, Hulsmans J, Chen L, Ristova D, Tranchina D, Purugganan MD, Coruzzi GM, Birnbaum KD.

PLoS Genet. 2013;9(9):e1003760. doi: 10.1371/journal.pgen.1003760. Epub 2013 Sep 5.

PMID:
24039603
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Integration of responses within and across Arabidopsis natural accessions uncovers loci controlling root systems architecture.

Rosas U, Cibrian-Jaramillo A, Ristova D, Banta JA, Gifford ML, Fan AH, Zhou RW, Kim GJ, Krouk G, Birnbaum KD, Purugganan MD, Coruzzi GM.

Proc Natl Acad Sci U S A. 2013 Sep 10;110(37):15133-8. doi: 10.1073/pnas.1305883110. Epub 2013 Aug 26.

PMID:
23980140
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

TARGET: a transient transformation system for genome-wide transcription factor target discovery.

Bargmann BO, Marshall-Colon A, Efroni I, Ruffel S, Birnbaum KD, Coruzzi GM, Krouk G.

Mol Plant. 2013 May;6(3):978-80. doi: 10.1093/mp/sst010. Epub 2013 Jan 18. No abstract available.

PMID:
23335732
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

RootScape: a landmark-based system for rapid screening of root architecture in Arabidopsis.

Ristova D, Rosas U, Krouk G, Ruffel S, Birnbaum KD, Coruzzi GM.

Plant Physiol. 2013 Mar;161(3):1086-96. doi: 10.1104/pp.112.210872. Epub 2013 Jan 18.

PMID:
23335624
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Nitrogen economics of root foraging: transitive closure of the nitrate-cytokinin relay and distinct systemic signaling for N supply vs. demand.

Ruffel S, Krouk G, Ristova D, Shasha D, Birnbaum KD, Coruzzi GM.

Proc Natl Acad Sci U S A. 2011 Nov 8;108(45):18524-9. doi: 10.1073/pnas.1108684108. Epub 2011 Oct 24.

PMID:
22025711
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

High nitrogen insensitive 9 (HNI9)-mediated systemic repression of root NO3- uptake is associated with changes in histone methylation.

Widiez T, El Kafafi el S, Girin T, Berr A, Ruffel S, Krouk G, Vayssières A, Shen WH, Coruzzi GM, Gojon A, Lepetit M.

Proc Natl Acad Sci U S A. 2011 Aug 9;108(32):13329-34. doi: 10.1073/pnas.1017863108. Epub 2011 Jul 25.

PMID:
21788519
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A framework integrating plant growth with hormones and nutrients.

Krouk G, Ruffel S, Gutiérrez RA, Gojon A, Crawford NM, Coruzzi GM, Lacombe B.

Trends Plant Sci. 2011 Apr;16(4):178-82. doi: 10.1016/j.tplants.2011.02.004. Epub 2011 Mar 9.

PMID:
21393048
[PubMed - indexed for MEDLINE]
12.

Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate.

Krouk G, Mirowski P, LeCun Y, Shasha DE, Coruzzi GM.

Genome Biol. 2010;11(12):R123. doi: 10.1186/gb-2010-11-12-r123. Epub 2010 Dec 23.

PMID:
21182762
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis.

Obertello M, Krouk G, Katari MS, Runko SJ, Coruzzi GM.

BMC Syst Biol. 2010 Aug 12;4:111. doi: 10.1186/1752-0509-4-111.

PMID:
20704717
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution.

Cibrián-Jaramillo A, De la Torre-Bárcena JE, Lee EK, Katari MS, Little DP, Stevenson DW, Martienssen R, Coruzzi GM, DeSalle R.

Genome Biol Evol. 2010 Jul 12;2:225-39. doi: 10.1093/gbe/evq012.

PMID:
20624728
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana.

Vidal EA, Araus V, Lu C, Parry G, Green PJ, Coruzzi GM, Gutiérrez RA.

Proc Natl Acad Sci U S A. 2010 Mar 2;107(9):4477-82. doi: 10.1073/pnas.0909571107. Epub 2010 Feb 8.

PMID:
20142497
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Nitrate signaling: adaptation to fluctuating environments.

Krouk G, Crawford NM, Coruzzi GM, Tsay YF.

Curr Opin Plant Biol. 2010 Jun;13(3):266-73. doi: 10.1016/j.pbi.2009.12.003. Epub 2010 Jan 21. Review.

PMID:
20093067
[PubMed - indexed for MEDLINE]
17.

In silico evaluation of predicted regulatory interactions in Arabidopsis thaliana.

Nero D, Katari MS, Kelfer J, Tranchina D, Coruzzi GM.

BMC Bioinformatics. 2009 Dec 21;10:435. doi: 10.1186/1471-2105-10-435.

PMID:
20025756
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

VirtualPlant: a software platform to support systems biology research.

Katari MS, Nowicki SD, Aceituno FF, Nero D, Kelfer J, Thompson LP, Cabello JM, Davidson RS, Goldberg AP, Shasha DE, Coruzzi GM, Gutiérrez RA.

Plant Physiol. 2010 Feb;152(2):500-15. doi: 10.1104/pp.109.147025. Epub 2009 Dec 9.

PMID:
20007449
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A systems view of responses to nutritional cues in Arabidopsis: toward a paradigm shift for predictive network modeling.

Ruffel S, Krouk G, Coruzzi GM.

Plant Physiol. 2010 Feb;152(2):445-52. doi: 10.1104/pp.109.148502. Epub 2009 Nov 25. No abstract available.

PMID:
19939945
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data.

de la Torre-Bárcena JE, Kolokotronis SO, Lee EK, Stevenson DW, Brenner ED, Katari MS, Coruzzi GM, DeSalle R.

PLoS One. 2009 Jun 2;4(6):e5764. doi: 10.1371/journal.pone.0005764.

PMID:
19503618
[PubMed - indexed for MEDLINE]
Free PMC Article
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