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Results: 7

1.

Removing batch effects for prediction problems with frozen surrogate variable analysis.

Parker HS, Corrada Bravo H, Leek JT.

PeerJ. 2014 Sep 23;2:e561. doi: 10.7717/peerj.561. eCollection 2014.

PMID:
25332844
[PubMed]
Free PMC Article
2.

Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition.

Pop M, Walker AW, Paulson J, Lindsay B, Antonio M, Hossain MA, Oundo J, Tamboura B, Mai V, Astrovskaya I, Corrada Bravo H, Rance R, Stares M, Levine MM, Panchalingam S, Kotloff K, Ikumapayi UN, Ebruke C, Adeyemi M, Ahmed D, Ahmed F, Alam MT, Amin R, Siddiqui S, Ochieng JB, Ouma E, Juma J, Mailu E, Omore R, Morris JG, Breiman RF, Saha D, Parkhill J, Nataro JP, Stine OC.

Genome Biol. 2014 Jun 27;15(6):R76. doi: 10.1186/gb-2014-15-6-r76.

PMID:
24995464
[PubMed - in process]
Free PMC Article
3.

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.

Aryee MJ, Jaffe AE, Corrada-Bravo H, Ladd-Acosta C, Feinberg AP, Hansen KD, Irizarry RA.

Bioinformatics. 2014 May 15;30(10):1363-9. doi: 10.1093/bioinformatics/btu049. Epub 2014 Jan 28.

PMID:
24478339
[PubMed - indexed for MEDLINE]
4.

Determinants of expression variability.

Alemu EY, Carl JW Jr, Corrada Bravo H, Hannenhalli S.

Nucleic Acids Res. 2014 Apr;42(6):3503-14. doi: 10.1093/nar/gkt1364. Epub 2014 Jan 15.

PMID:
24435799
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

BlindCall: ultra-fast base-calling of high-throughput sequencing data by blind deconvolution.

Ye C, Hsiao C, Corrada Bravo H.

Bioinformatics. 2014 May 1;30(9):1214-9. doi: 10.1093/bioinformatics/btu010. Epub 2014 Jan 9.

PMID:
24413520
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

RNA-sequencing of the brain transcriptome implicates dysregulation of neuroplasticity, circadian rhythms and GTPase binding in bipolar disorder.

Akula N, Barb J, Jiang X, Wendland JR, Choi KH, Sen SK, Hou L, Chen DT, Laje G, Johnson K, Lipska BK, Kleinman JE, Corrada-Bravo H, Detera-Wadleigh S, Munson PJ, McMahon FJ.

Mol Psychiatry. 2014 Nov;19(11):1179-85. doi: 10.1038/mp.2013.170. Epub 2014 Jan 7.

PMID:
24393808
[PubMed - in process]
7.

Overcoming bias and systematic errors in next generation sequencing data.

Taub MA, Corrada Bravo H, Irizarry RA.

Genome Med. 2010 Dec 10;2(12):87. doi: 10.1186/gm208.

PMID:
21144010
[PubMed]
Free PMC Article

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