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A shotgun proteomic approach reveals that Fe deficiency causes marked changes in the protein profiles of plasma membrane and detergent resistant microdomain preparations from Beta vulgaris roots.

Gutierrez-Carbonell E, Takahashi D, Lüthje S, Gonzalez-Reyes JA, Mongrand S, Contreras-Moreira B, Abadía A, Uemura M, Abadía J, López-Millán AF.

J Proteome Res. 2016 Jun 20. [Epub ahead of print]


In Vivo Chromatin Targets of the Transcription Factor Yin Yang 2 in Trophoblast Stem Cells.

Pérez-Palacios R, Macías-Redondo S, Climent M, Contreras-Moreira B, Muniesa P, Schoorlemmer J.

PLoS One. 2016 May 18;11(5):e0154268. doi: 10.1371/journal.pone.0154268. eCollection 2016.


Sinorhizobium meliloti low molecular mass phosphotyrosine phosphatase SMc02309 modifies activity of the UDP-glucose pyrophosphorylase ExoN involved in succinoglycan biosynthesis.

Medeot DB, Romina Rivero M, Cendoya E, Contreras-Moreira B, Rossi FA, Fischer SE, Becker A, Jofré E.

Microbiology. 2016 Feb;162(3):552-63. doi: 10.1099/mic.0.000239. Epub 2016 Jan 25.


Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast.

Kelemen Z, Sebastian A, Xu W, Grain D, Salsac F, Avon A, Berger N, Tran J, Dubreucq B, Lurin C, Lepiniec L, Contreras-Moreira B, Dubos C.

PLoS One. 2015 Oct 20;10(10):e0141044. doi: 10.1371/journal.pone.0141044. eCollection 2015.


RSAT 2015: Regulatory Sequence Analysis Tools.

Medina-Rivera A, Defrance M, Sand O, Herrmann C, Castro-Mondragon JA, Delerce J, Jaeger S, Blanchet C, Vincens P, Caron C, Staines DM, Contreras-Moreira B, Artufel M, Charbonnier-Khamvongsa L, Hernandez C, Thieffry D, Thomas-Chollier M, van Helden J.

Nucleic Acids Res. 2015 Jul 1;43(W1):W50-6. doi: 10.1093/nar/gkv362. Epub 2015 Apr 22.


Protein profile of Beta vulgaris leaf apoplastic fluid and changes induced by Fe deficiency and Fe resupply.

Ceballos-Laita L, Gutierrez-Carbonell E, Lattanzio G, Vázquez S, Contreras-Moreira B, Abadía A, Abadía J, López-Millán AF.

Front Plant Sci. 2015 Mar 18;6:145. doi: 10.3389/fpls.2015.00145. eCollection 2015.


Robust identification of orthologues and paralogues for microbial pan-genomics using GET_HOMOLOGUES: a case study of pIncA/C plasmids.

Vinuesa P, Contreras-Moreira B.

Methods Mol Biol. 2015;1231:203-32. doi: 10.1007/978-1-4939-1720-4_14.


Loss of neuronal 3D chromatin organization causes transcriptional and behavioural deficits related to serotonergic dysfunction.

Ito S, Magalska A, Alcaraz-Iborra M, Lopez-Atalaya JP, Rovira V, Contreras-Moreira B, Lipinski M, Olivares R, Martinez-Hernandez J, Ruszczycki B, Lujan R, Geijo-Barrientos E, Wilczynski GM, Barco A.

Nat Commun. 2014 Jul 18;5:4450. doi: 10.1038/ncomms5450.


HvFT1 polymorphism and effect-survey of barley germplasm and expression analysis.

Loscos J, Igartua E, Contreras-Moreira B, Gracia MP, Casas AM.

Front Plant Sci. 2014 Jun 6;5:251. doi: 10.3389/fpls.2014.00251. eCollection 2014.


Integrating bioinformatic resources to predict transcription factors interacting with cis-sequences conserved in co-regulated genes.

Dubos C, Kelemen Z, Sebastian A, Bülow L, Huep G, Xu W, Grain D, Salsac F, Brousse C, Lepiniec L, Weisshaar B, Contreras-Moreira B, Hehl R.

BMC Genomics. 2014 Apr 28;15:317. doi: 10.1186/1471-2164-15-317.


footprintDB: a database of transcription factors with annotated cis elements and binding interfaces.

Sebastian A, Contreras-Moreira B.

Bioinformatics. 2014 Jan 15;30(2):258-65. doi: 10.1093/bioinformatics/btt663. Epub 2013 Nov 14.


Genetic recombination is associated with intrinsic disorder in plant proteomes.

Yruela I, Contreras-Moreira B.

BMC Genomics. 2013 Nov 9;14:772. doi: 10.1186/1471-2164-14-772.


GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis.

Contreras-Moreira B, Vinuesa P.

Appl Environ Microbiol. 2013 Dec;79(24):7696-701. doi: 10.1128/AEM.02411-13. Epub 2013 Oct 4.


Fine mapping of the Rrs1 resistance locus against scald in two large populations derived from Spanish barley landraces.

Hofmann K, Silvar C, Casas AM, Herz M, Büttner B, Gracia MP, Contreras-Moreira B, Wallwork H, Igartua E, Schweizer G.

Theor Appl Genet. 2013 Dec;126(12):3091-102. doi: 10.1007/s00122-013-2196-4. Epub 2013 Sep 26.


OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.

Serra TS, Figueiredo DD, Cordeiro AM, Almeida DM, Lourenço T, Abreu IA, Sebastián A, Fernandes L, Contreras-Moreira B, Oliveira MM, Saibo NJ.

Plant Mol Biol. 2013 Jul;82(4-5):439-55. doi: 10.1007/s11103-013-0073-9. Epub 2013 May 24.


The twilight zone of cis element alignments.

Sebastian A, Contreras-Moreira B.

Nucleic Acids Res. 2013 Feb 1;41(3):1438-49. doi: 10.1093/nar/gks1301. Epub 2012 Dec 24.


Protein disorder in plants: a view from the chloroplast.

Yruela I, Contreras-Moreira B.

BMC Plant Biol. 2012 Sep 13;12:165.


HvFT1 (VrnH3) drives latitudinal adaptation in Spanish barleys.

Casas AM, Djemel A, Ciudad FJ, Yahiaoui S, Ponce LJ, Contreras-Moreira B, Gracia MP, Lasa JM, Igartua E.

Theor Appl Genet. 2011 May;122(7):1293-304. doi: 10.1007/s00122-011-1531-x. Epub 2011 Jan 30.


Evolutionary divergence of chloroplast FAD synthetase proteins.

Yruela I, Arilla-Luna S, Medina M, Contreras-Moreira B.

BMC Evol Biol. 2010 Oct 18;10:311. doi: 10.1186/1471-2148-10-311.


Dissecting the expression patterns of transcription factors across conditions using an integrated network-based approach.

Janga SC, Contreras-Moreira B.

Nucleic Acids Res. 2010 Nov;38(20):6841-56. doi: 10.1093/nar/gkq612. Epub 2010 Jul 14.

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