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Results: 20

1.

Parallel independent evolution of pathogenicity within the genus Yersinia.

Reuter S, Connor TR, Barquist L, Walker D, Feltwell T, Harris SR, Fookes M, Hall ME, Petty NK, Fuchs TM, Corander J, Dufour M, Ringwood T, Savin C, Bouchier C, Martin L, Miettinen M, Shubin M, Riehm JM, Laukkanen-Ninios R, Sihvonen LM, Siitonen A, Skurnik M, Falcão JP, Fukushima H, Scholz HC, Prentice MB, Wren BW, Parkhill J, Carniel E, Achtman M, McNally A, Thomson NR.

Proc Natl Acad Sci U S A. 2014 May 6;111(18):6768-73. doi: 10.1073/pnas.1317161111. Epub 2014 Apr 21.

PMID:
24753568
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Cryptic ecology among host generalist Campylobacter jejuni in domestic animals.

Sheppard SK, Cheng L, Méric G, de Haan CP, Llarena AK, Marttinen P, Vidal A, Ridley A, Clifton-Hadley F, Connor TR, Strachan NJ, Forbes K, Colles FM, Jolley KA, Bentley SD, Maiden MC, Hänninen ML, Parkhill J, Hanage WP, Corander J.

Mol Ecol. 2014 May;23(10):2442-51. doi: 10.1111/mec.12742. Epub 2014 Apr 25.

PMID:
24689900
[PubMed - in process]
3.

Distinguishable epidemics of multidrug-resistant Salmonella Typhimurium DT104 in different hosts.

Mather AE, Reid SW, Maskell DJ, Parkhill J, Fookes MC, Harris SR, Brown DJ, Coia JE, Mulvey MR, Gilmour MW, Petrovska L, de Pinna E, Kuroda M, Akiba M, Izumiya H, Connor TR, Suchard MA, Lemey P, Mellor DJ, Haydon DT, Thomson NR.

Science. 2013 Sep 27;341(6153):1514-7. doi: 10.1126/science.1240578. Epub 2013 Sep 12.

PMID:
24030491
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Historical zoonoses and other changes in host tropism of Staphylococcus aureus, identified by phylogenetic analysis of a population dataset.

Shepheard MA, Fleming VM, Connor TR, Corander J, Feil EJ, Fraser C, Hanage WP.

PLoS One. 2013 May 7;8(5):e62369. doi: 10.1371/journal.pone.0062369. Print 2013.

PMID:
23667472
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Retrospective analysis of whole genome sequencing compared to prospective typing data in further informing the epidemiological investigation of an outbreak of Shigella sonnei in the UK.

McDonnell J, Dallman T, Atkin S, Turbitt DA, Connor TR, Grant KA, Thomson NR, Jenkins C.

Epidemiol Infect. 2013 Dec;141(12):2568-75. doi: 10.1017/S0950268813000137. Epub 2013 Feb 21.

PMID:
23425681
[PubMed - indexed for MEDLINE]
6.

Hierarchical and spatially explicit clustering of DNA sequences with BAPS software.

Cheng L, Connor TR, Sirén J, Aanensen DM, Corander J.

Mol Biol Evol. 2013 May;30(5):1224-8. doi: 10.1093/molbev/mst028. Epub 2013 Feb 13.

PMID:
23408797
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Sequencing and functional annotation of avian pathogenic Escherichia coli serogroup O78 strains reveal the evolution of E. coli lineages pathogenic for poultry via distinct mechanisms.

Dziva F, Hauser H, Connor TR, van Diemen PM, Prescott G, Langridge GC, Eckert S, Chaudhuri RR, Ewers C, Mellata M, Mukhopadhyay S, Curtiss R 3rd, Dougan G, Wieler LH, Thomson NR, Pickard DJ, Stevens MP.

Infect Immun. 2013 Mar;81(3):838-49. doi: 10.1128/IAI.00585-12. Epub 2012 Dec 28.

PMID:
23275093
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Emergence and global spread of epidemic healthcare-associated Clostridium difficile.

He M, Miyajima F, Roberts P, Ellison L, Pickard DJ, Martin MJ, Connor TR, Harris SR, Fairley D, Bamford KB, D'Arc S, Brazier J, Brown D, Coia JE, Douce G, Gerding D, Kim HJ, Koh TH, Kato H, Senoh M, Louie T, Michell S, Butt E, Peacock SJ, Brown NM, Riley T, Songer G, Wilcox M, Pirmohamed M, Kuijper E, Hawkey P, Wren BW, Dougan G, Parkhill J, Lawley TD.

Nat Genet. 2013 Jan;45(1):109-13. doi: 10.1038/ng.2478. Epub 2012 Dec 9.

PMID:
23222960
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Targeted restoration of the intestinal microbiota with a simple, defined bacteriotherapy resolves relapsing Clostridium difficile disease in mice.

Lawley TD, Clare S, Walker AW, Stares MD, Connor TR, Raisen C, Goulding D, Rad R, Schreiber F, Brandt C, Deakin LJ, Pickard DJ, Duncan SH, Flint HJ, Clark TG, Parkhill J, Dougan G.

PLoS Pathog. 2012;8(10):e1002995. doi: 10.1371/journal.ppat.1002995. Epub 2012 Oct 25.

PMID:
23133377
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Population subdivision and the detection of recombination in non-typable Haemophilus influenzae.

Connor TR, Corander J, Hanage WP.

Microbiology. 2012 Dec;158(Pt 12):2958-64. doi: 10.1099/mic.0.063073-0. Epub 2012 Oct 4.

PMID:
23038806
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa.

Okoro CK, Kingsley RA, Connor TR, Harris SR, Parry CM, Al-Mashhadani MN, Kariuki S, Msefula CL, Gordon MA, de Pinna E, Wain J, Heyderman RS, Obaro S, Alonso PL, Mandomando I, MacLennan CA, Tapia MD, Levine MM, Tennant SM, Parkhill J, Dougan G.

Nat Genet. 2012 Nov;44(11):1215-21. doi: 10.1038/ng.2423. Epub 2012 Sep 30.

PMID:
23023330
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers.

Quail MA, Smith M, Coupland P, Otto TD, Harris SR, Connor TR, Bertoni A, Swerdlow HP, Gu Y.

BMC Genomics. 2012 Jul 24;13:341. doi: 10.1186/1471-2164-13-341.

PMID:
22827831
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer.

Murchison EP, Schulz-Trieglaff OB, Ning Z, Alexandrov LB, Bauer MJ, Fu B, Hims M, Ding Z, Ivakhno S, Stewart C, Ng BL, Wong W, Aken B, White S, Alsop A, Becq J, Bignell GR, Cheetham RK, Cheng W, Connor TR, Cox AJ, Feng ZP, Gu Y, Grocock RJ, Harris SR, Khrebtukova I, Kingsbury Z, Kowarsky M, Kreiss A, Luo S, Marshall J, McBride DJ, Murray L, Pearse AM, Raine K, Rasolonjatovo I, Shaw R, Tedder P, Tregidgo C, Vilella AJ, Wedge DC, Woods GM, Gormley N, Humphray S, Schroth G, Smith G, Hall K, Searle SM, Carter NP, Papenfuss AT, Futreal PA, Campbell PJ, Yang F, Bentley DR, Evers DJ, Stratton MR.

Cell. 2012 Feb 17;148(4):780-91. doi: 10.1016/j.cell.2011.11.065.

PMID:
22341448
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Population structure in the Neisseria, and the biological significance of fuzzy species.

Corander J, Connor TR, O'Dwyer CA, Kroll JS, Hanage WP.

J R Soc Interface. 2012 Jun 7;9(71):1208-15. doi: 10.1098/rsif.2011.0601. Epub 2011 Nov 9.

PMID:
22072450
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Detection of recombination events in bacterial genomes from large population samples.

Marttinen P, Hanage WP, Croucher NJ, Connor TR, Harris SR, Bentley SD, Corander J.

Nucleic Acids Res. 2012 Jan;40(1):e6. doi: 10.1093/nar/gkr928. Epub 2011 Nov 7.

PMID:
22064866
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Salmonella bongori provides insights into the evolution of the Salmonellae.

Fookes M, Schroeder GN, Langridge GC, Blondel CJ, Mammina C, Connor TR, Seth-Smith H, Vernikos GS, Robinson KS, Sanders M, Petty NK, Kingsley RA, Bäumler AJ, Nuccio SP, Contreras I, Santiviago CA, Maskell D, Barrow P, Humphrey T, Nastasi A, Roberts M, Frankel G, Parkhill J, Dougan G, Thomson NR.

PLoS Pathog. 2011 Aug;7(8):e1002191. doi: 10.1371/journal.ppat.1002191. Epub 2011 Aug 18.

PMID:
21876672
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Evidence for several waves of global transmission in the seventh cholera pandemic.

Mutreja A, Kim DW, Thomson NR, Connor TR, Lee JH, Kariuki S, Croucher NJ, Choi SY, Harris SR, Lebens M, Niyogi SK, Kim EJ, Ramamurthy T, Chun J, Wood JL, Clemens JD, Czerkinsky C, Nair GB, Holmgren J, Parkhill J, Dougan G.

Nature. 2011 Aug 24;477(7365):462-5. doi: 10.1038/nature10392.

PMID:
21866102
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Bayesian semi-supervised classification of bacterial samples using MLST databases.

Cheng L, Connor TR, Aanensen DM, Spratt BG, Corander J.

BMC Bioinformatics. 2011 Jul 26;12:302. doi: 10.1186/1471-2105-12-302.

PMID:
21791094
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Hyper-recombination, diversity, and antibiotic resistance in pneumococcus.

Hanage WP, Fraser C, Tang J, Connor TR, Corander J.

Science. 2009 Jun 12;324(5933):1454-7. doi: 10.1126/science.1171908.

PMID:
19520963
[PubMed - indexed for MEDLINE]
Free Article
20.

Assessing the reliability of eBURST using simulated populations with known ancestry.

Turner KM, Hanage WP, Fraser C, Connor TR, Spratt BG.

BMC Microbiol. 2007 Apr 12;7:30.

PMID:
17430587
[PubMed - indexed for MEDLINE]
Free PMC Article

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