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Patterns of Gene Conversion in Duplicated Yeast Histones Suggest Strong Selection on a Coadapted Macromolecular Complex.

Scienski K, Fay JC, Conant GC.

Genome Biol Evol. 2015 Nov 11;7(12):3249-58. doi: 10.1093/gbe/evv216.


The players may change but the game remains: network analyses of ruminal microbiomes suggest taxonomic differences mask functional similarity.

Taxis TM, Wolff S, Gregg SJ, Minton NO, Zhang C, Dai J, Schnabel RD, Taylor JF, Kerley MS, Pires JC, Lamberson WR, Conant GC.

Nucleic Acids Res. 2015 Nov 16;43(20):9600-12. doi: 10.1093/nar/gkv973. Epub 2015 Sep 29.


Some assembly required: evolutionary and systems perspectives on the mammalian reproductive system.

Mordhorst BR, Wilson ML, Conant GC.

Cell Tissue Res. 2016 Jan;363(1):267-78. doi: 10.1007/s00441-015-2257-x. Epub 2015 Aug 8.


The butterfly plant arms-race escalated by gene and genome duplications.

Edger PP, Heidel-Fischer HM, Bekaert M, Rota J, Glöckner G, Platts AE, Heckel DG, Der JP, Wafula EK, Tang M, Hofberger JA, Smithson A, Hall JC, Blanchette M, Bureau TE, Wright SI, dePamphilis CW, Eric Schranz M, Barker MS, Conant GC, Wahlberg N, Vogel H, Pires JC, Wheat CW.

Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):8362-6. doi: 10.1073/pnas.1503926112. Epub 2015 Jun 22.


The yeast protein interaction network has a capacity for self-organization.

Dhroso A, Korkin D, Conant GC.

FEBS J. 2014 Aug;281(15):3420-32. doi: 10.1111/febs.12870. Epub 2014 Jul 1.


Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time.

Conant GC, Birchler JA, Pires JC.

Curr Opin Plant Biol. 2014 Jun;19:91-8. doi: 10.1016/j.pbi.2014.05.008. Epub 2014 Jun 5. Review.


Gene duplication and phenotypic changes in the evolution of mammalian metabolic networks.

Bekaert M, Conant GC.

PLoS One. 2014 Jan 28;9(1):e87115. doi: 10.1371/journal.pone.0087115. eCollection 2014.


Diet alters both the structure and taxonomy of the ovine gut microbial ecosystem.

Ellison MJ, Conant GC, Cockrum RR, Austin KJ, Truong H, Becchi M, Lamberson WR, Cammack KM.

DNA Res. 2014;21(2):115-25. doi: 10.1093/dnares/dst044. Epub 2013 Oct 29.


Watching the grin fade: tracing the effects of polyploidy on different evolutionary time scales.

Mayfield-Jones D, Washburn JD, Arias T, Edger PP, Pires JC, Conant GC.

Semin Cell Dev Biol. 2013 Apr;24(4):320-31. doi: 10.1016/j.semcdb.2013.02.002. Epub 2013 Mar 1. Review.


A conserved mammalian protein interaction network.

Pérez-Bercoff Å, Hudson CM, Conant GC.

PLoS One. 2013;8(1):e52581. doi: 10.1371/journal.pone.0052581. Epub 2013 Jan 2.


Metabolic and evolutionary costs of herbivory defense: systems biology of glucosinolate synthesis.

Bekaert M, Edger PP, Hudson CM, Pires JC, Conant GC.

New Phytol. 2012 Oct;196(2):596-605. doi: 10.1111/j.1469-8137.2012.04302.x. Epub 2012 Sep 4.


Polyploidy and the evolution of complex traits.

Huminiecki L, Conant GC.

Int J Evol Biol. 2012;2012:292068. doi: 10.1155/2012/292068. Epub 2012 Jul 30.


Very low rate of gene conversion in the yeast genome.

Casola C, Conant GC, Hahn MW.

Mol Biol Evol. 2012 Dec;29(12):3817-26. doi: 10.1093/molbev/mss192. Epub 2012 Jul 27.


Long identical multispecies elements in plant and animal genomes.

Reneker J, Lyons E, Conant GC, Pires JC, Freeling M, Shyu CR, Korkin D.

Proc Natl Acad Sci U S A. 2012 May 8;109(19):E1183-91. doi: 10.1073/pnas.1121356109. Epub 2012 Apr 10.


Selection for higher gene copy number after different types of plant gene duplications.

Hudson CM, Puckett EE, Bekaert M, Pires JC, Conant GC.

Genome Biol Evol. 2011;3:1369-80. doi: 10.1093/gbe/evr115. Epub 2011 Nov 4.


Patterns of indirect protein interactions suggest a spatial organization to metabolism.

Pérez-Bercoff Å, McLysaght A, Conant GC.

Mol Biosyst. 2011 Nov;7(11):3056-64. doi: 10.1039/c1mb05168g. Epub 2011 Aug 31.


Transcriptional robustness and protein interactions are associated in yeast.

Bekaert M, Conant GC.

BMC Syst Biol. 2011 May 5;5:62. doi: 10.1186/1752-0509-5-62.


Two-phase resolution of polyploidy in the Arabidopsis metabolic network gives rise to relative and absolute dosage constraints.

Bekaert M, Edger PP, Pires JC, Conant GC.

Plant Cell. 2011 May;23(5):1719-28. doi: 10.1105/tpc.110.081281. Epub 2011 May 3.

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