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Items: 1 to 20 of 82

1.

Periodontal pathogens and tetracycline resistance genes in subgingival biofilm of periodontally healthy and diseased Dominican adults.

Collins JR, Arredondo A, Roa A, Valdez Y, León R, Blanc V.

Clin Oral Investig. 2015 Jun 30. [Epub ahead of print]

PMID:
26121972
2.

Erratum to: The somatic autosomal mutation matrix in cancer genomes.

Temiz NA, Donohue DE, Bacolla A, Vasquez KM, Cooper DN, Mudunuri U, Ivanic J, Cer RZ, Yi M, Stephens RM, Collins JR, Luke BT.

Hum Genet. 2015 Aug;134(8):865-7. doi: 10.1007/s00439-015-1576-z. No abstract available.

3.

The somatic autosomal mutation matrix in cancer genomes.

Temiz NA, Donohue DE, Bacolla A, Vasquez KM, Cooper DN, Mudunuri U, Ivanic J, Cer RZ, Yi M, Stephens RM, Collins JR, Luke BT.

Hum Genet. 2015 Aug;134(8):851-64. doi: 10.1007/s00439-015-1566-1. Epub 2015 May 23. Erratum in: Hum Genet. 2015 Aug;134(8):865-7.

4.

AVIA v2.0: annotation, visualization and impact analysis of genomic variants and genes.

Vuong H, Che A, Ravichandran S, Luke BT, Collins JR, Mudunuri US.

Bioinformatics. 2015 Aug 15;31(16):2748-50. doi: 10.1093/bioinformatics/btv200. Epub 2015 Apr 9.

PMID:
25861966
5.

Can structural features of kinase receptors provide clues on selectivity and inhibition? A molecular modeling study.

Ravichandran S, Luke BT, Collins JR.

J Mol Graph Model. 2015 Apr;57:36-48. doi: 10.1016/j.jmgm.2014.12.007. Epub 2015 Jan 12.

6.

Evaluation of human periimplant soft tissues around nonsubmerged machined standard and platform-switched abutments.

Collins JR, Berg RW, Rodríguez M, Rodríguez I, Coelho PG, Tovar N.

Implant Dent. 2015 Feb;24(1):57-61. doi: 10.1097/ID.0000000000000209. Erratum in: Implant Dent. 2015 Aug;24(4):486.

PMID:
25621550
7.

Clinical and histological evaluation of socket grafting using different types of bone substitute in adult patients.

Collins JR, Jiménez E, Martínez C, Polanco RT, Hirata R, Mousa R, Coelho PG, Bonfante EA, Tovar N.

Implant Dent. 2014 Aug;23(4):489-95. doi: 10.1097/ID.0000000000000106.

PMID:
25025854
8.

Guanine holes are prominent targets for mutation in cancer and inherited disease.

Bacolla A, Temiz NA, Yi M, Ivanic J, Cer RZ, Donohue DE, Ball EV, Mudunuri US, Wang G, Jain A, Volfovsky N, Luke BT, Stephens RM, Cooper DN, Collins JR, Vasquez KM.

PLoS Genet. 2013;9(9):e1003816. doi: 10.1371/journal.pgen.1003816. Epub 2013 Sep 26.

9.

Beneficial effects of an arginine-calcium carbonate desensitizing paste for treatment of dentin hypersensitivity.

Collins JR, Richardson D, Sotero K, Mateo LR, Mauriz I.

Am J Dent. 2013 Apr;26(2):63-7.

PMID:
24073527
10.

Evaluation of human peri-implant soft tissues around alumina-blasted/acid-etched standard and platform-switched abutments.

Collins JR, Sued MR, Rodríguez IJ, Berg R, Coelho PG.

Int J Periodontics Restorative Dent. 2013 Mar-Apr;33(2):e51-7. doi: 10.11607/prd.0938.

PMID:
23484180
11.

Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools.

Cer RZ, Donohue DE, Mudunuri US, Temiz NA, Loss MA, Starner NJ, Halusa GN, Volfovsky N, Yi M, Luke BT, Bacolla A, Collins JR, Stephens RM.

Nucleic Acids Res. 2013 Jan;41(Database issue):D94-D100. doi: 10.1093/nar/gks955. Epub 2012 Nov 3.

12.

Targeting JAK1/2 and mTOR in murine xenograft models of Ph-like acute lymphoblastic leukemia.

Maude SL, Tasian SK, Vincent T, Hall JW, Sheen C, Roberts KG, Seif AE, Barrett DM, Chen IM, Collins JR, Mullighan CG, Hunger SP, Harvey RC, Willman CL, Fridman JS, Loh ML, Grupp SA, Teachey DT.

Blood. 2012 Oct 25;120(17):3510-8. doi: 10.1182/blood-2012-03-415448. Epub 2012 Sep 6.

13.

A molecular model of the enantioselective liquid chromatographic separation of (R,S)-ifosfamide and its N-dechloroethylated metabolites on a teicoplanin aglycon chiral stationary phase.

Ravichandran S, Collins JR, Singh N, W Wainer I.

J Chromatogr A. 2012 Dec 21;1269:218-25. doi: 10.1016/j.chroma.2012.08.019. Epub 2012 Aug 10.

14.

The role of methylation in the intrinsic dynamics of B- and Z-DNA.

Temiz NA, Donohue DE, Bacolla A, Luke BT, Collins JR.

PLoS One. 2012;7(4):e35558. doi: 10.1371/journal.pone.0035558. Epub 2012 Apr 17.

15.

Searching for non-B DNA-forming motifs using nBMST (non-B DNA motif search tool).

Cer RZ, Bruce KH, Donohue DE, Temiz NA, Mudunuri US, Yi M, Volfovsky N, Bacolla A, Luke BT, Collins JR, Stephens RM.

Curr Protoc Hum Genet. 2012 Apr;Chapter 18:Unit 18.7.1-22. doi: 10.1002/0471142905.hg1807s73.

16.

Non-B DNA-forming sequences and WRN deficiency independently increase the frequency of base substitution in human cells.

Bacolla A, Wang G, Jain A, Chuzhanova NA, Cer RZ, Collins JR, Cooper DN, Bohr VA, Vasquez KM.

J Biol Chem. 2011 Mar 25;286(12):10017-26. doi: 10.1074/jbc.M110.176636. Epub 2011 Feb 1.

17.

Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes.

Cer RZ, Bruce KH, Mudunuri US, Yi M, Volfovsky N, Luke BT, Bacolla A, Collins JR, Stephens RM.

Nucleic Acids Res. 2011 Jan;39(Database issue):D383-91. doi: 10.1093/nar/gkq1170. Epub 2010 Nov 21.

18.

Conformation dependence of pKa's of the chromophores from the purple asFP595 and yellow zFP538 fluorescent proteins.

Nemukhin AV, Topol IA, Grigorenko BL, Savitsky AP, Collins JR.

Theochem. 2008 Aug 30;863(1-3):39-43.

19.

Structural conservation of interferon gamma among vertebrates.

Savan R, Ravichandran S, Collins JR, Sakai M, Young HA.

Cytokine Growth Factor Rev. 2009 Apr;20(2):115-24. doi: 10.1016/j.cytogfr.2009.02.006. Epub 2009 Mar 5. Review.

20.

Examining the significance of fingerprint-based classifiers.

Luke BT, Collins JR.

BMC Bioinformatics. 2008 Dec 17;9:545. doi: 10.1186/1471-2105-9-545.

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