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Items: 1 to 20 of 58

1.

PepPSy: a web server to prioritize gene products in experimental and biocuration workflows.

Sallou O, Duek PD, Darde TA, Collin O, Lane L, Chalmel F.

Database (Oxford). 2016 May 12;2016. pii: baw070. doi: 10.1093/database/baw070. Print 2016.

2.

BioShaDock: a community driven bioinformatics shared Docker-based tools registry.

Moreews F, Sallou O, Ménager H, Le Bras Y, Monjeaud C, Blanchet C, Collin O.

F1000Res. 2015 Dec 14;4:1443. doi: 10.12688/f1000research.7536.1. eCollection 2015.

3.

Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads.

Le Bras Y, Collin O, Monjeaud C, Lacroix V, Rivals É, Lemaitre C, Miele V, Sacomoto G, Marchet C, Cazaux B, Zine El Aabidine A, Salmela L, Alves-Carvalho S, Andrieux A, Uricaru R, Peterlongo P.

Gigascience. 2016 Feb 11;5:9. doi: 10.1186/s13742-015-0105-2. eCollection 2016.

4.

BioMAJ2Galaxy: automatic update of reference data in Galaxy using BioMAJ.

Bretaudeau A, Monjeaud C, Le Bras Y, Legeai F, Collin O.

Gigascience. 2015 May 9;4:22. doi: 10.1186/s13742-015-0063-8. eCollection 2015.

5.

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Smedley D, Haider S, Durinck S, Pandini L, Provero P, Allen J, Arnaiz O, Awedh MH, Baldock R, Barbiera G, Bardou P, Beck T, Blake A, Bonierbale M, Brookes AJ, Bucci G, Buetti I, Burge S, Cabau C, Carlson JW, Chelala C, Chrysostomou C, Cittaro D, Collin O, Cordova R, Cutts RJ, Dassi E, Di Genova A, Djari A, Esposito A, Estrella H, Eyras E, Fernandez-Banet J, Forbes S, Free RC, Fujisawa T, Gadaleta E, Garcia-Manteiga JM, Goodstein D, Gray K, Guerra-Assunção JA, Haggarty B, Han DJ, Han BW, Harris T, Harshbarger J, Hastings RK, Hayes RD, Hoede C, Hu S, Hu ZL, Hutchins L, Kan Z, Kawaji H, Keliet A, Kerhornou A, Kim S, Kinsella R, Klopp C, Kong L, Lawson D, Lazarevic D, Lee JH, Letellier T, Li CY, Lio P, Liu CJ, Luo J, Maass A, Mariette J, Maurel T, Merella S, Mohamed AM, Moreews F, Nabihoudine I, Ndegwa N, Noirot C, Perez-Llamas C, Primig M, Quattrone A, Quesneville H, Rambaldi D, Reecy J, Riba M, Rosanoff S, Saddiq AA, Salas E, Sallou O, Shepherd R, Simon R, Sperling L, Spooner W, Staines DM, Steinbach D, Stone K, Stupka E, Teague JW, Dayem Ullah AZ, Wang J, Ware D, Wong-Erasmus M, Youens-Clark K, Zadissa A, Zhang SJ, Kasprzyk A.

Nucleic Acids Res. 2015 Jul 1;43(W1):W589-98. doi: 10.1093/nar/gkv350. Epub 2015 Apr 20.

6.

The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community.

Darde TA, Sallou O, Becker E, Evrard B, Monjeaud C, Le Bras Y, Jégou B, Collin O, Rolland AD, Chalmel F.

Nucleic Acids Res. 2015 Jul 1;43(W1):W109-16. doi: 10.1093/nar/gkv345. Epub 2015 Apr 16.

7.

High-resolution profiling of novel transcribed regions during rat spermatogenesis.

Chalmel F, Lardenois A, Evrard B, Rolland AD, Sallou O, Dumargne MC, Coiffec I, Collin O, Primig M, Jégou B.

Biol Reprod. 2014 Jul;91(1):5. doi: 10.1095/biolreprod.114.118166. Epub 2014 Apr 16.

8.

LIMLE, a new molecule over-expressed following activation, is involved in the stimulatory properties of dendritic cells.

Le Texier L, Durand J, Lavault A, Hulin P, Collin O, Le Bras Y, Cuturi MC, Chiffoleau E.

PLoS One. 2014 Apr 4;9(4):e93894. doi: 10.1371/journal.pone.0093894. eCollection 2014.

9.

Migration of dendritic cells: physical principles, molecular mechanisms, and functional implications.

Heuzé ML, Vargas P, Chabaud M, Le Berre M, Liu YJ, Collin O, Solanes P, Voituriez R, Piel M, Lennon-Duménil AM.

Immunol Rev. 2013 Nov;256(1):240-54. doi: 10.1111/imr.12108. Review.

PMID:
24117825
10.

FISH-quant: automatic counting of transcripts in 3D FISH images.

Mueller F, Senecal A, Tantale K, Marie-Nelly H, Ly N, Collin O, Basyuk E, Bertrand E, Darzacq X, Zimmer C.

Nat Methods. 2013 Apr;10(4):277-8. doi: 10.1038/nmeth.2406. No abstract available.

PMID:
23538861
11.

CyanoLyase: a database of phycobilin lyase sequences, motifs and functions.

Bretaudeau A, Coste F, Humily F, Garczarek L, Le Corguillé G, Six C, Ratin M, Collin O, Schluchter WM, Partensky F.

Nucleic Acids Res. 2013 Jan;41(Database issue):D396-401. doi: 10.1093/nar/gks1091. Epub 2012 Nov 21.

12.

PHYMYCO-DB: a curated database for analyses of fungal diversity and evolution.

Mahé S, Duhamel M, Le Calvez T, Guillot L, Sarbu L, Bretaudeau A, Collin O, Dufresne A, Kiers ET, Vandenkoornhuyse P.

PLoS One. 2012;7(9):e43117. doi: 10.1371/journal.pone.0043117. Epub 2012 Sep 13.

13.

GPSy: a cross-species gene prioritization system for conserved biological processes--application in male gamete development.

Britto R, Sallou O, Collin O, Michaux G, Primig M, Chalmel F.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W458-65. doi: 10.1093/nar/gks380. Epub 2012 May 8.

14.

Fitness of macrolide resistant Campylobacter coli and Campylobacter jejuni.

Zeitouni S, Collin O, Andraud M, Ermel G, Kempf I.

Microb Drug Resist. 2012 Apr;18(2):101-8. doi: 10.1089/mdr.2011.0188. Epub 2012 Feb 10.

PMID:
22324770
15.

Cell migration in confinement: a micro-channel-based assay.

Heuzé ML, Collin O, Terriac E, Lennon-Duménil AM, Piel M.

Methods Mol Biol. 2011;769:415-34. doi: 10.1007/978-1-61779-207-6_28.

PMID:
21748692
16.

Contractility of the cell rear drives invasion of breast tumor cells in 3D Matrigel.

Poincloux R, Collin O, Lizárraga F, Romao M, Debray M, Piel M, Chavrier P.

Proc Natl Acad Sci U S A. 2011 Feb 1;108(5):1943-8. doi: 10.1073/pnas.1010396108. Epub 2011 Jan 18.

17.

GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycle.

Lardenois A, Gattiker A, Collin O, Chalmel F, Primig M.

Database (Oxford). 2010 Dec 11;2010:baq030. doi: 10.1093/database/baq030. Print 2010.

18.

Spatiotemporal organization, regulation, and functions of tractions during neutrophil chemotaxis.

Shin ME, He Y, Li D, Na S, Chowdhury F, Poh YC, Collin O, Su P, de Lanerolle P, Schwartz MA, Wang N, Wang F.

Blood. 2010 Oct 28;116(17):3297-310. doi: 10.1182/blood-2009-12-260851. Epub 2010 Jul 8.

19.

AphidBase: a centralized bioinformatic resource for annotation of the pea aphid genome.

Legeai F, Shigenobu S, Gauthier JP, Colbourne J, Rispe C, Collin O, Richards S, Wilson AC, Murphy T, Tagu D.

Insect Mol Biol. 2010 Mar;19 Suppl 2:5-12. doi: 10.1111/j.1365-2583.2009.00930.x.

20.

Genome sequence of the pea aphid Acyrthosiphon pisum.

International Aphid Genomics Consortium.

PLoS Biol. 2010 Feb 23;8(2):e1000313. doi: 10.1371/journal.pbio.1000313.

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