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Results: 16

1.

Target-independent prediction of drug synergies using only drug lipophilicity.

Yilancioglu K, Weinstein ZB, Meydan C, Akhmetov A, Toprak I, Durmaz A, Iossifov I, Kazan H, Roth FP, Cokol M.

J Chem Inf Model. 2014 Jul 15. [Epub ahead of print]

PMID:
25026390
[PubMed - as supplied by publisher]
2.

Strength of Selection Pressure Is an Important Parameter Contributing to the Complexity of Antibiotic Resistance Evolution.

Oz T, Guvenek A, Yildiz S, Karaboga E, Tamer YT, Mumcuyan N, Ozan VB, Senturk GH, Cokol M, Yeh P, Toprak E.

Mol Biol Evol. 2014 Jun 24. pii: msu191. [Epub ahead of print]

PMID:
24962091
[PubMed - as supplied by publisher]
Free Article
3.

A drug similarity network for understanding drug mechanism of action.

Karabulut NP, Akhmedov M, Cokol M.

J Bioinform Comput Biol. 2014 Apr;12(2):1441007. doi: 10.1142/S0219720014410078. Epub 2014 Mar 31.

PMID:
24712534
[PubMed - in process]
4.

Large-scale identification and analysis of suppressive drug interactions.

Cokol M, Weinstein ZB, Yilancioglu K, Tasan M, Doak A, Cansever D, Mutlu B, Li S, Rodriguez-Esteban R, Akhmedov M, Guvenek A, Cokol M, Cetiner S, Giaever G, Iossifov I, Nislow C, Shoichet B, Roth FP.

Chem Biol. 2014 Apr 24;21(4):541-51. doi: 10.1016/j.chembiol.2014.02.012. Epub 2014 Apr 3.

PMID:
24704506
[PubMed - in process]
5.

Oxidative stress is a mediator for increased lipid accumulation in a newly isolated Dunaliella salina strain.

Yilancioglu K, Cokol M, Pastirmaci I, Erman B, Cetiner S.

PLoS One. 2014 Mar 20;9(3):e91957. doi: 10.1371/journal.pone.0091957. eCollection 2014.

PMID:
24651514
[PubMed - in process]
Free PMC Article
6.

Drugs and their interactions.

Cokol M.

Curr Drug Discov Technol. 2013 Jun;10(2):106-13.

PMID:
23237673
[PubMed - indexed for MEDLINE]
7.

Novel anti-HER2 monoclonal antibodies: synergy and antagonism with tumor necrosis factor-α.

Ceran C, Cokol M, Cingoz S, Tasan I, Ozturk M, Yagci T.

BMC Cancer. 2012 Oct 4;12:450. doi: 10.1186/1471-2407-12-450.

PMID:
23033967
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Systematic exploration of synergistic drug pairs.

Cokol M, Chua HN, Tasan M, Mutlu B, Weinstein ZB, Suzuki Y, Nergiz ME, Costanzo M, Baryshnikova A, Giaever G, Nislow C, Myers CL, Andrews BJ, Boone C, Roth FP.

Mol Syst Biol. 2011 Nov 8;7:544. doi: 10.1038/msb.2011.71.

PMID:
22068327
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The genetic landscape of a cell.

Costanzo M, Baryshnikova A, Bellay J, Kim Y, Spear ED, Sevier CS, Ding H, Koh JL, Toufighi K, Mostafavi S, Prinz J, St Onge RP, VanderSluis B, Makhnevych T, Vizeacoumar FJ, Alizadeh S, Bahr S, Brost RL, Chen Y, Cokol M, Deshpande R, Li Z, Lin ZY, Liang W, Marback M, Paw J, San Luis BJ, Shuteriqi E, Tong AH, van Dyk N, Wallace IM, Whitney JA, Weirauch MT, Zhong G, Zhu H, Houry WA, Brudno M, Ragibizadeh S, Papp B, Pál C, Roth FP, Giaever G, Nislow C, Troyanskaya OG, Bussey H, Bader GD, Gingras AC, Morris QD, Kim PM, Kaiser CA, Myers CL, Andrews BJ, Boone C.

Science. 2010 Jan 22;327(5964):425-31. doi: 10.1126/science.1180823.

PMID:
20093466
[PubMed - indexed for MEDLINE]
Free Article
10.

A protein domain-based interactome network for C. elegans early embryogenesis.

Boxem M, Maliga Z, Klitgord N, Li N, Lemmens I, Mana M, de Lichtervelde L, Mul JD, van de Peut D, Devos M, Simonis N, Yildirim MA, Cokol M, Kao HL, de Smet AS, Wang H, Schlaitz AL, Hao T, Milstein S, Fan C, Tipsword M, Drew K, Galli M, Rhrissorrakrai K, Drechsel D, Koller D, Roth FP, Iakoucheva LM, Dunker AK, Bonneau R, Gunsalus KC, Hill DE, Piano F, Tavernier J, van den Heuvel S, Hyman AA, Vidal M.

Cell. 2008 Aug 8;134(3):534-45. doi: 10.1016/j.cell.2008.07.009. Erratum in: Cell. 2012 Dec 21;151(7):1633.

PMID:
18692475
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Visualizing evolution and impact of biomedical fields.

Cokol M, Rodriguez-Esteban R.

J Biomed Inform. 2008 Dec;41(6):1050-2. doi: 10.1016/j.jbi.2008.05.002. Epub 2008 May 11.

PMID:
18558511
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Retraction rates are on the rise.

Cokol M, Ozbay F, Rodriguez-Esteban R.

EMBO Rep. 2008 Jan;9(1):2. doi: 10.1038/sj.embor.7401143. No abstract available.

PMID:
18174889
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A recipe for high impact.

Cokol M, Rodriguez-Esteban R, Rzhetsky A.

Genome Biol. 2007;8(5):406.

PMID:
17493291
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

How many scientific papers should be retracted?

Cokol M, Iossifov I, Rodriguez-Esteban R, Rzhetsky A.

EMBO Rep. 2007 May;8(5):422-3. No abstract available.

PMID:
17471252
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Emergent behavior of growing knowledge about molecular interactions.

Cokol M, Iossifov I, Weinreb C, Rzhetsky A.

Nat Biotechnol. 2005 Oct;23(10):1243-7. No abstract available.

PMID:
16211067
[PubMed - indexed for MEDLINE]
16.

Finding nuclear localization signals.

Cokol M, Nair R, Rost B.

EMBO Rep. 2000 Nov;1(5):411-5.

PMID:
11258480
[PubMed - indexed for MEDLINE]
Free PMC Article

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