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Results: 1 to 20 of 52

1.

BioCreative-IV virtual issue.

Arighi CN, Wu CH, Cohen KB, Hirschman L, Krallinger M, Valencia A, Lu Z, Wilbur JW, Wiegers TC.

Database (Oxford). 2014 May 22;2014. pii: bau039. doi: 10.1093/database/bau039. Print 2014. No abstract available.

PMID:
24852177
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters.

Funk C, Baumgartner W Jr, Garcia B, Roeder C, Bada M, Cohen KB, Hunter LE, Verspoor K.

BMC Bioinformatics. 2014 Feb 26;15:59. doi: 10.1186/1471-2105-15-59.

PMID:
24571547
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

Katayama T, Wilkinson MD, Aoki-Kinoshita KF, Kawashima S, Yamamoto Y, Yamaguchi A, Okamoto S, Kawano S, Kim JD, Wang Y, Wu H, Kano Y, Ono H, Bono H, Kocbek S, Aerts J, Akune Y, Antezana E, Arakawa K, Aranda B, Baran J, Bolleman J, Bonnal RJ, Buttigieg PL, Campbell MP, Chen YA, Chiba H, Cock PJ, Cohen KB, Constantin A, Duck G, Dumontier M, Fujisawa T, Fujiwara T, Goto N, Hoehndorf R, Igarashi Y, Itaya H, Ito M, Iwasaki W, Kalaš M, Katoda T, Kim T, Kokubu A, Komiyama Y, Kotera M, Laibe C, Lapp H, Lütteke T, Marshall MS, Mori T, Mori H, Morita M, Murakami K, Nakao M, Narimatsu H, Nishide H, Nishimura Y, Nystrom-Persson J, Ogishima S, Okamura Y, Okuda S, Oshita K, Packer NH, Prins P, Ranzinger R, Rocca-Serra P, Sansone S, Sawaki H, Shin SH, Splendiani A, Strozzi F, Tadaka S, Toukach P, Uchiyama I, Umezaki M, Vos R, Whetzel PL, Yamada I, Yamasaki C, Yamashita R, York WS, Zmasek CM, Kawamoto S, Takagi T.

J Biomed Semantics. 2014 Feb 5;5(1):5. doi: 10.1186/2041-1480-5-5.

PMID:
24495517
[PubMed]
Free PMC Article
4.

Combining heterogenous data for prediction of disease related and pharmacogenes.

Funk CS, Hunter LE, Cohen KB.

Pac Symp Biocomput. 2014:328-39.

PMID:
24297559
[PubMed - indexed for MEDLINE]
Free Article
5.

BioC: a minimalist approach to interoperability for biomedical text processing.

Comeau DC, Islamaj Doğan R, Ciccarese P, Cohen KB, Krallinger M, Leitner F, Lu Z, Peng Y, Rinaldi F, Torii M, Valencia A, Verspoor K, Wiegers TC, Wu CH, Wilbur WJ.

Database (Oxford). 2013 Sep 18;2013:bat064. doi: 10.1093/database/bat064. Print 2013.

PMID:
24048470
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Improved tools for the Brainbow toolbox.

Cai D, Cohen KB, Luo T, Lichtman JW, Sanes JR.

Nat Methods. 2013 Jun;10(6):540-7.

PMID:
23866336
[PubMed - indexed for MEDLINE]
7.

Improved tools for the Brainbow toolbox.

Cai D, Cohen KB, Luo T, Lichtman JW, Sanes JR.

Nat Methods. 2013 May 5;10(6):540-7. doi: 10.1038/nmeth.2450. Epub 2013 May 5.

PMID:
23817127
[PubMed - as supplied by publisher]
Free PMC Article
8.

Chapter 16: text mining for translational bioinformatics.

Cohen KB, Hunter LE.

PLoS Comput Biol. 2013 Apr;9(4):e1003044. doi: 10.1371/journal.pcbi.1003044. Epub 2013 Apr 25.

PMID:
23633944
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Mining FDA drug labels for medical conditions.

Li Q, Deleger L, Lingren T, Zhai H, Kaiser M, Stoutenborough L, Jegga AG, Cohen KB, Solti I.

BMC Med Inform Decis Mak. 2013 Apr 24;13:53. doi: 10.1186/1472-6947-13-53.

PMID:
23617267
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.

Arighi CN, Carterette B, Cohen KB, Krallinger M, Wilbur WJ, Fey P, Dodson R, Cooper L, Van Slyke CE, Dahdul W, Mabee P, Li D, Harris B, Gillespie M, Jimenez S, Roberts P, Matthews L, Becker K, Drabkin H, Bello S, Licata L, Chatr-aryamontri A, Schaeffer ML, Park J, Haendel M, Van Auken K, Li Y, Chan J, Muller HM, Cui H, Balhoff JP, Chi-Yang Wu J, Lu Z, Wei CH, Tudor CO, Raja K, Subramani S, Natarajan J, Cejuela JM, Dubey P, Wu C.

Database (Oxford). 2013 Jan 17;2013:bas056. doi: 10.1093/database/bas056. Print 2013.

PMID:
23327936
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

BioCreative-2012 virtual issue.

Wu CH, Arighi CN, Cohen KB, Hirschman L, Krallinger M, Lu Z, Mattingly C, Valencia A, Wiegers TC, John Wilbur W.

Database (Oxford). 2012 Dec 5;2012:bas049. doi: 10.1093/database/bas049. Print 2012. No abstract available.

PMID:
23221175
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools.

Verspoor K, Cohen KB, Lanfranchi A, Warner C, Johnson HL, Roeder C, Choi JD, Funk C, Malenkiy Y, Eckert M, Xue N, Baumgartner WA Jr, Bada M, Palmer M, Hunter LE.

BMC Bioinformatics. 2012 Aug 17;13:207. doi: 10.1186/1471-2105-13-207.

PMID:
22901054
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Mining the pharmacogenomics literature--a survey of the state of the art.

Hahn U, Cohen KB, Garten Y, Shah NH.

Brief Bioinform. 2012 Jul;13(4):460-94. doi: 10.1093/bib/bbs018.

PMID:
22833496
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Concept annotation in the CRAFT corpus.

Bada M, Eckert M, Evans D, Garcia K, Shipley K, Sitnikov D, Baumgartner WA Jr, Cohen KB, Verspoor K, Blake JA, Hunter LE.

BMC Bioinformatics. 2012 Jul 9;13:161. doi: 10.1186/1471-2105-13-161.

PMID:
22776079
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Text mining for the biocuration workflow.

Hirschman L, Burns GA, Krallinger M, Arighi C, Cohen KB, Valencia A, Wu CH, Chatr-Aryamontri A, Dowell KG, Huala E, Lourenço A, Nash R, Veuthey AL, Wiegers T, Winter AG.

Database (Oxford). 2012 Apr 18;2012:bas020. doi: 10.1093/database/bas020. Print 2012.

PMID:
22513129
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Sentiment Analysis of Suicide Notes: A Shared Task.

Pestian JP, Matykiewicz P, Linn-Gust M, South B, Uzuner O, Wiebe J, Cohen KB, Hurdle J, Brew C.

Biomed Inform Insights. 2012 Jan 30;5(Suppl 1):3-16.

PMID:
22419877
[PubMed]
Free PMC Article
17.

Parenthetically speaking: classifying the contents of parentheses for text mining.

Cohen KB, Christiansen T, Hunter LE.

AMIA Annu Symp Proc. 2011;2011:267-72. Epub 2011 Oct 22.

PMID:
22195078
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Overview of the BioCreative III Workshop.

Arighi CN, Lu Z, Krallinger M, Cohen KB, Wilbur WJ, Valencia A, Hirschman L, Wu CH.

BMC Bioinformatics. 2011 Oct 3;12 Suppl 8:S1. doi: 10.1186/1471-2105-12-S8-S1.

PMID:
22151647
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

U-Compare bio-event meta-service: compatible BioNLP event extraction services.

Kano Y, Björne J, Ginter F, Salakoski T, Buyko E, Hahn U, Cohen KB, Verspoor K, Roeder C, Hunter LE, Kilicoglu H, Bergler S, Van Landeghem S, Van Parys T, Van de Peer Y, Miwa M, Ananiadou S, Neves M, Pascual-Montano A, Özgür A, Radev DR, Riedel S, Sætre R, Chun HW, Kim JD, Pyysalo S, Ohta T, Tsujii J.

BMC Bioinformatics. 2011 Dec 18;12:481. doi: 10.1186/1471-2105-12-481.

PMID:
22177292
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The structural and content aspects of abstracts versus bodies of full text journal articles are different.

Cohen KB, Johnson HL, Verspoor K, Roeder C, Hunter LE.

BMC Bioinformatics. 2010 Sep 29;11:492. doi: 10.1186/1471-2105-11-492.

PMID:
20920264
[PubMed - indexed for MEDLINE]
Free PMC Article

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