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Results: 1 to 20 of 39

1.

Identification of p38 Beta as a Therapeutic Target for the Treatment of Sézary Syndrome.

Bliss-Moreau M, Coarfa C, Gunaratne PH, Guitart J, Krett NL, Rosen ST.

J Invest Dermatol. 2014 Aug 22. doi: 10.1038/jid.2014.367. [Epub ahead of print]

PMID:
25148579
[PubMed - as supplied by publisher]
2.

Analysis of interactions between the epigenome and structural mutability of the genome using Genboree Workbench tools.

Coarfa C, Pichot C, Jackson A, Tandon A, Amin V, Raghuraman S, Paithankar S, Lee AV, McGuire SE, Milosavljevic A.

BMC Bioinformatics. 2014;15 Suppl 7:S2. doi: 10.1186/1471-2105-15-S7-S2. Epub 2014 May 28.

PMID:
25080362
[PubMed - in process]
Free PMC Article
3.

PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease.

Boele J, Persson H, Shin JW, Ishizu Y, Newie IS, Søkilde R, Hawkins SM, Coarfa C, Ikeda K, Takayama K, Horie-Inoue K, Ando Y, Burroughs AM, Sasaki C, Suzuki C, Sakai M, Aoki S, Ogawa A, Hasegawa A, Lizio M, Kaida K, Teusink B, Carninci P, Suzuki H, Inoue S, Gunaratne PH, Rovira C, Hayashizaki Y, de Hoon MJ.

Proc Natl Acad Sci U S A. 2014 Aug 5;111(31):11467-72. doi: 10.1073/pnas.1317751111. Epub 2014 Jul 21.

PMID:
25049417
[PubMed - in process]
4.

An epigenomic approach to therapy for tamoxifen-resistant breast cancer.

Feng Q, Zhang Z, Shea MJ, Creighton CJ, Coarfa C, Hilsenbeck SG, Lanz R, He B, Wang L, Fu X, Nardone A, Song Y, Bradner J, Mitsiades N, Mitsiades CS, Osborne CK, Schiff R, O'Malley BW.

Cell Res. 2014 Jul;24(7):809-19. doi: 10.1038/cr.2014.71. Epub 2014 May 30.

PMID:
24874954
[PubMed - in process]
Free PMC Article
5.

mtDNA haplogroup and single nucleotide polymorphisms structure human microbiome communities.

Ma J, Coarfa C, Qin X, Bonnen PE, Milosavljevic A, Versalovic J, Aagaard K.

BMC Genomics. 2014 Apr 3;15:257. doi: 10.1186/1471-2164-15-257.

PMID:
24694284
[PubMed - in process]
Free Article
6.

CDKN2D-WDFY2 is a cancer-specific fusion gene recurrent in high-grade serous ovarian carcinoma.

Kannan K, Coarfa C, Rajapakshe K, Hawkins SM, Matzuk MM, Milosavljevic A, Yen L.

PLoS Genet. 2014 Mar 27;10(3):e1004216. doi: 10.1371/journal.pgen.1004216. eCollection 2014 Mar.

PMID:
24675677
[PubMed - in process]
Free PMC Article
7.

Induced multipotency in adult keratinocytes through down-regulation of ΔNp63 or DGCR8.

Chakravarti D, Su X, Cho MS, Bui NH, Coarfa C, Venkatanarayan A, Benham AL, Flores González RE, Alana J, Xiao W, Leung ML, Vin H, Chan IL, Aquino A, Müller N, Wang H, Cooney AJ, Parker-Thornburg J, Tsai KY, Gunaratne PH, Flores ER.

Proc Natl Acad Sci U S A. 2014 Feb 4;111(5):E572-81. doi: 10.1073/pnas.1319743111. Epub 2014 Jan 21.

PMID:
24449888
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Steroid receptor coactivator 1 is an integrator of glucose and NAD+/NADH homeostasis.

Motamed M, Rajapakshe KI, Hartig SM, Coarfa C, Moses RE, Lonard DM, O'Malley BW.

Mol Endocrinol. 2014 Mar;28(3):395-405. doi: 10.1210/me.2013-1404. Epub 2014 Jan 17.

PMID:
24438340
[PubMed - in process]
9.

Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing.

Kunde-Ramamoorthy G, Coarfa C, Laritsky E, Kessler NJ, Harris RA, Xu M, Chen R, Shen L, Milosavljevic A, Waterland RA.

Nucleic Acids Res. 2014 Apr;42(6):e43. doi: 10.1093/nar/gkt1325. Epub 2014 Jan 3.

PMID:
24391148
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Expression and phosphorylation of the AS160_v2 splice variant supports GLUT4 activation and the Warburg effect in multiple myeloma.

Cheng JC, McBrayer SK, Coarfa C, Dalva-Aydemir S, Gunaratne PH, Carpten JD, Keats JK, Rosen ST, Shanmugam M.

Cancer Metab. 2013 May 29;1(1):14. doi: 10.1186/2049-3002-1-14.

PMID:
24280290
[PubMed]
11.

Identification of a pan-cancer oncogenic microRNA superfamily anchored by a central core seed motif.

Hamilton MP, Rajapakshe K, Hartig SM, Reva B, McLellan MD, Kandoth C, Ding L, Zack TI, Gunaratne PH, Wheeler DA, Coarfa C, McGuire SE.

Nat Commun. 2013;4:2730. doi: 10.1038/ncomms3730.

PMID:
24220575
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Chromatin changes in dicer-deficient mouse embryonic stem cells in response to retinoic acid induced differentiation.

Tennakoon JB, Wang H, Coarfa C, Cooney AJ, Gunaratne PH.

PLoS One. 2013 Sep 9;8(9):e74556. doi: 10.1371/journal.pone.0074556. eCollection 2013.

PMID:
24040281
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

SOX2 regulates YAP1 to maintain stemness and determine cell fate in the osteo-adipo lineage.

Seo E, Basu-Roy U, Gunaratne PH, Coarfa C, Lim DS, Basilico C, Mansukhani A.

Cell Rep. 2013 Jun 27;3(6):2075-87. doi: 10.1016/j.celrep.2013.05.029. Epub 2013 Jun 20.

PMID:
23791527
[PubMed - indexed for MEDLINE]
Free Article
14.

G-CSF receptor positive neuroblastoma subpopulations are enriched in chemotherapy-resistant or relapsed tumors and are highly tumorigenic.

Hsu DM, Agarwal S, Benham A, Coarfa C, Trahan DN, Chen Z, Stowers PN, Courtney AN, Lakoma A, Barbieri E, Metelitsa LS, Gunaratne P, Kim ES, Shohet JM.

Cancer Res. 2013 Jul 1;73(13):4134-46. doi: 10.1158/0008-5472.CAN-12-4056. Epub 2013 May 16.

PMID:
23687340
[PubMed - indexed for MEDLINE]
Free Article
15.

Prostate cancer-associated mutations in speckle-type POZ protein (SPOP) regulate steroid receptor coactivator 3 protein turnover.

Geng C, He B, Xu L, Barbieri CE, Eedunuri VK, Chew SA, Zimmermann M, Bond R, Shou J, Li C, Blattner M, Lonard DM, Demichelis F, Coarfa C, Rubin MA, Zhou P, O'Malley BW, Mitsiades N.

Proc Natl Acad Sci U S A. 2013 Apr 23;110(17):6997-7002. doi: 10.1073/pnas.1304502110. Epub 2013 Apr 4.

PMID:
23559371
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Confounding by repetitive elements and CpG islands does not explain the association between hypomethylation and genomic instability.

Harris RA, Shaw C, Li J, Cheung SW, Coarfa C, Jeong M, Goodell MA, White LD, Patel A, Kang SH, Chinault AC, Gambin T, Gambin A, Lupski JR, Milosavljevic A.

PLoS Genet. 2013;9(2):e1003333. doi: 10.1371/journal.pgen.1003333. Epub 2013 Feb 28. No abstract available.

PMID:
23468659
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The Genboree Microbiome Toolset and the analysis of 16S rRNA microbial sequences.

Riehle K, Coarfa C, Jackson A, Ma J, Tandon A, Paithankar S, Raghuraman S, Mistretta TA, Saulnier D, Raza S, Diaz MA, Shulman R, Aagaard K, Versalovic J, Milosavljevic A.

BMC Bioinformatics. 2012;13 Suppl 13:S11. doi: 10.1186/1471-2105-13-S13-S11. Epub 2012 Aug 24.

PMID:
23320832
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The repertoire and features of human platelet microRNAs.

Plé H, Landry P, Benham A, Coarfa C, Gunaratne PH, Provost P.

PLoS One. 2012;7(12):e50746. doi: 10.1371/journal.pone.0050746. Epub 2012 Dec 4.

PMID:
23226537
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Atlas2 Cloud: a framework for personal genome analysis in the cloud.

Evani US, Challis D, Yu J, Jackson AR, Paithankar S, Bainbridge MN, Jakkamsetti A, Pham P, Coarfa C, Milosavljevic A, Yu F.

BMC Genomics. 2012;13 Suppl 6:S19. doi: 10.1186/1471-2164-13-S6-S19. Epub 2012 Oct 26.

PMID:
23134663
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy.

Aagaard K, Riehle K, Ma J, Segata N, Mistretta TA, Coarfa C, Raza S, Rosenbaum S, Van den Veyver I, Milosavljevic A, Gevers D, Huttenhower C, Petrosino J, Versalovic J.

PLoS One. 2012;7(6):e36466. doi: 10.1371/journal.pone.0036466. Epub 2012 Jun 13.

PMID:
22719832
[PubMed - indexed for MEDLINE]
Free PMC Article

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