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Lack of dissemination of acquired resistance to β-lactam in small wild mammals around an isolated village in the Amazonian forest.

Grall N, Barraud O, Wieder I, Hua A, Perrier M, Babosan A, Gaschet M, Clermont O, Denamur E, Catzeflis F, Decré D, Ploy MC, Andremont A.

Environ Microbiol Rep. 2015 Apr 9. doi: 10.1111/1758-2229.12289. [Epub ahead of print]


A guide to the various phylogenetic classification schemes for Escherichia coli and the correspondence among schemes.

Clermont O, Gordon D, Denamur E.

Microbiology. 2015 Feb 24. pii: mic.0.000063. doi: 10.1099/mic.0.000063. [Epub ahead of print]


The rpoS gene is predominantly inactivated during laboratory storage and undergoes source-sink evolution in Escherichia coli species.

Bleibtreu A, Clermont O, Darlu P, Glodt J, Branger C, Picard B, Denamur E.

J Bacteriol. 2014 Dec;196(24):4276-84. doi: 10.1128/JB.01972-14. Epub 2014 Sep 29.


Escherichia coli bacteremia in children: age and portal of entry are the main predictors of severity.

Burdet C, Clermont O, Bonacorsi S, Laouénan C, Bingen E, Aujard Y, Mentré F, Lefort A, Denamur E; COLIBAFI Group.

Pediatr Infect Dis J. 2014 Aug;33(8):872-9. doi: 10.1097/INF.0000000000000309.


Characterization of a P1-like bacteriophage carrying an SHV-2 extended-spectrum β-lactamase from an Escherichia coli strain.

Billard-Pomares T, Fouteau S, Jacquet ME, Roche D, Barbe V, Castellanos M, Bouet JY, Cruveiller S, Médigue C, Blanco J, Clermont O, Denamur E, Branger C.

Antimicrob Agents Chemother. 2014 Nov;58(11):6550-7. doi: 10.1128/AAC.03183-14. Epub 2014 Aug 18.


Escherichia coli bacteraemia in pregnant women is life-threatening for foetuses.

Surgers L, Bleibtreu A, Burdet C, Clermont O, Laouénan C, Lefort A, Mentré F, Carbonne B, Bingen E, Meynard JL, Denamur E; COLIBAFI Group.

Clin Microbiol Infect. 2014 Dec;20(12):O1035-41. doi: 10.1111/1469-0691.12742. Epub 2014 Aug 11.


Maternally acquired genotoxic Escherichia coli alters offspring's intestinal homeostasis.

Payros D, Secher T, Boury M, Brehin C, Ménard S, Salvador-Cartier C, Cuevas-Ramos G, Watrin C, Marcq I, Nougayrède JP, Dubois D, Bedu A, Garnier F, Clermont O, Denamur E, Plaisancié P, Theodorou V, Fioramonti J, Olier M, Oswald E.

Gut Microbes. 2014 May-Jun;5(3):313-25. doi: 10.4161/gmic.28932. Epub 2014 Jun 27.


Development of an allele-specific PCR for Escherichia coli B2 sub-typing, a rapid and easy to perform substitute of multilocus sequence typing.

Clermont O, Christenson JK, Daubié AS, Gordon DM, Denamur E.

J Microbiol Methods. 2014 Jun;101:24-7. doi: 10.1016/j.mimet.2014.03.008. Epub 2014 Mar 28.


Escherichia coli bacteraemia in adults: age-related differences in clinical and bacteriological characteristics, and outcome.

Roubaud Baudron C, Panhard X, Clermont O, Mentré F, Fantin B, Denamur E, Lefort A; COLIBAFI Group.

Epidemiol Infect. 2014 Dec;142(12):2672-83. doi: 10.1017/S0950268814000211. Epub 2014 Feb 20.


Rapid and specific detection, molecular epidemiology, and experimental virulence of the O16 subgroup within Escherichia coli sequence type 131.

Johnson JR, Clermont O, Johnston B, Clabots C, Tchesnokova V, Sokurenko E, Junka AF, Maczynska B, Denamur E.

J Clin Microbiol. 2014 May;52(5):1358-65. doi: 10.1128/JCM.03502-13. Epub 2014 Feb 5.


Complexity of Escherichia coli bacteremia pathophysiology evidenced by comparison of isolates from blood and portal of entry within single patients.

Clermont O, Glodt J, Burdet C, Pognard D, Lefort A, Branger C, Denamur E; COLIBAFI Group Members.

Int J Med Microbiol. 2013 Dec;303(8):529-32. doi: 10.1016/j.ijmm.2013.07.002. Epub 2013 Jul 17.


Characterization of fecal extended-spectrum-β-lactamase-producing Escherichia coli in a remote community during a long time period.

Woerther PL, Angebault C, Jacquier H, Clermont O, El Mniai A, Moreau B, Djossou F, Peroz G, Catzeflis F, Denamur E, Andremont A.

Antimicrob Agents Chemother. 2013 Oct;57(10):5060-6. doi: 10.1128/AAC.00848-13. Epub 2013 Aug 5.


Relative fecal abundance of extended-spectrum-β-lactamase-producing Escherichia coli strains and their occurrence in urinary tract infections in women.

Ruppé E, Lixandru B, Cojocaru R, Büke C, Paramythiotou E, Angebault C, Visseaux C, Djuikoue I, Erdem E, Burduniuc O, El Mniai A, Marcel C, Perrier M, Kesteman T, Clermont O, Denamur E, Armand-Lefèvre L, Andremont A.

Antimicrob Agents Chemother. 2013 Sep;57(9):4512-7. doi: 10.1128/AAC.00238-13. Epub 2013 Jul 8.


Real-time PCR for quantitative analysis of human commensal Escherichia coli populations reveals a high frequency of subdominant phylogroups.

Smati M, Clermont O, Le Gal F, Schichmanoff O, Jauréguy F, Eddi A, Denamur E, Picard B; Coliville Group.

Appl Environ Microbiol. 2013 Aug;79(16):5005-12. doi: 10.1128/AEM.01423-13. Epub 2013 Jun 14.


The Clermont Escherichia coli phylo-typing method revisited: improvement of specificity and detection of new phylo-groups.

Clermont O, Christenson JK, Denamur E, Gordon DM.

Environ Microbiol Rep. 2013 Feb;5(1):58-65. doi: 10.1111/1758-2229.12019. Epub 2012 Dec 24.


Commensal Escherichia coli strains in Guiana reveal a high genetic diversity with host-dependant population structure.

Lescat M, Clermont O, Woerther PL, Glodt J, Dion S, Skurnik D, Djossou F, Dupont C, Perroz G, Picard B, Catzeflis F, Andremont A, Denamur E.

Environ Microbiol Rep. 2013 Feb;5(1):49-57. doi: 10.1111/j.1758-2229.2012.00374.x. Epub 2012 Aug 19.


Evidence for coexistence of distinct Escherichia coli populations in various aquatic environments and their survival in estuary water.

Berthe T, Ratajczak M, Clermont O, Denamur E, Petit F.

Appl Environ Microbiol. 2013 Aug;79(15):4684-93. doi: 10.1128/AEM.00698-13. Epub 2013 May 31.


Fitness, stress resistance, and extraintestinal virulence in Escherichia coli.

Bleibtreu A, Gros PA, Laouénan C, Clermont O, Le Nagard H, Picard B, Tenaillon O, Denamur E.

Infect Immun. 2013 Aug;81(8):2733-42. doi: 10.1128/IAI.01329-12. Epub 2013 May 20.


Pathophysiology of Escherichia coli ventilator-associated pneumonia: implication of highly virulent extraintestinal pathogenic strains.

Messika J, Magdoud F, Clermont O, Margetis D, Gaudry S, Roux D, Branger C, Dreyfuss D, Denamur E, Ricard JD.

Intensive Care Med. 2012 Dec;38(12):2007-16. doi: 10.1007/s00134-012-2699-5. Epub 2012 Sep 28.


The CTX-M-15-producing Escherichia coli clone O25b: H4-ST131 has high intestine colonization and urinary tract infection abilities.

Vimont S, Boyd A, Bleibtreu A, Bens M, Goujon JM, Garry L, Clermont O, Denamur E, Arlet G, Vandewalle A.

PLoS One. 2012;7(9):e46547. doi: 10.1371/journal.pone.0046547. Epub 2012 Sep 28.

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