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Items: 1 to 20 of 40

1.

NCG 5.0: updates of a manually curated repository of cancer genes and associated properties from cancer mutational screenings.

An O, Dall'Olio GM, Mourikis TP, Ciccarelli FD.

Nucleic Acids Res. 2016 Jan 4;44(D1):D992-9. doi: 10.1093/nar/gkv1123. Epub 2015 Oct 29.

2.

Corrigendum: Massive gene amplification drives paediatric hepatocellular carcinoma caused by bile salt export pump deficiency.

Iannelli F, Collino A, Sinha S, Radaelli E, Nicoli P, D'Antiga L, Sonzogni A, Faivre J, Buendia MA, Sturm E, Thompson RJ, Knisely AS, Natoli G, Ghisletti S, Ciccarelli FD.

Nat Commun. 2015 Jul 2;6:7456. doi: 10.1038/ncomms8456. No abstract available.

PMID:
26135945
3.

Deep sequencing of the X chromosome reveals the proliferation history of colorectal adenomas.

De Grassi A, Iannelli F, Cereda M, Volorio S, Melocchi V, Viel A, Basso G, Laghi L, Caselle M, Ciccarelli FD.

Genome Biol. 2014 Aug 30;15(8):437. doi: 10.1186/s13059-014-0437-8.

4.

Massive gene amplification drives paediatric hepatocellular carcinoma caused by bile salt export pump deficiency.

Iannelli F, Collino A, Sinha S, Radaelli E, Nicoli P, D'Antiga L, Sonzogni A, Faivre J, Buendia MA, Sturm E, Thompson RJ, Knisely AS, Natoli G, Ghisletti S, Ciccarelli FD.

Nat Commun. 2014 May 13;5:3850. doi: 10.1038/ncomms4850. Erratum in: Nat Commun. 2015;6:7456.

PMID:
24819516
5.

NCG 4.0: the network of cancer genes in the era of massive mutational screenings of cancer genomes.

An O, Pendino V, D'Antonio M, Ratti E, Gentilini M, Ciccarelli FD.

Database (Oxford). 2014 Mar 7;2014:bau015. doi: 10.1093/database/bau015. Print 2014.

6.

Recessive cancer genes engage in negative genetic interactions with their functional paralogs.

D'Antonio M, Guerra RF, Cereda M, Marchesi S, Montani F, Nicassio F, Di Fiore PP, Ciccarelli FD.

Cell Rep. 2013 Dec 26;5(6):1519-26. doi: 10.1016/j.celrep.2013.11.033. Epub 2013 Dec 19.

7.

Integrated analysis of recurrent properties of cancer genes to identify novel drivers.

D'Antonio M, Ciccarelli FD.

Genome Biol. 2013 May 29;14(5):R52. doi: 10.1186/gb-2013-14-5-r52.

8.

Endogenous retrotransposition activates oncogenic pathways in hepatocellular carcinoma.

Shukla R, Upton KR, Muñoz-Lopez M, Gerhardt DJ, Fisher ME, Nguyen T, Brennan PM, Baillie JK, Collino A, Ghisletti S, Sinha S, Iannelli F, Radaelli E, Dos Santos A, Rapoud D, Guettier C, Samuel D, Natoli G, Carninci P, Ciccarelli FD, Garcia-Perez JL, Faivre J, Faulkner GJ.

Cell. 2013 Mar 28;153(1):101-11. doi: 10.1016/j.cell.2013.02.032.

9.

Network of Cancer Genes (NCG 3.0): integration and analysis of genetic and network properties of cancer genes.

D'Antonio M, Pendino V, Sinha S, Ciccarelli FD.

Nucleic Acids Res. 2012 Jan;40(Database issue):D978-83. doi: 10.1093/nar/gkr952. Epub 2011 Nov 12.

10.

Modification of gene duplicability during the evolution of protein interaction network.

D'Antonio M, Ciccarelli FD.

PLoS Comput Biol. 2011 Apr;7(4):e1002029. doi: 10.1371/journal.pcbi.1002029. Epub 2011 Apr 7.

11.

Preface. The seventh RECOMB-CG Workshop, September 27–29, 2009, Alfréd Rényi Institute of Mathematics, Budapest, Hungary.

Miklos I, Ciccarelli FD.

J Comput Biol. 2010 Sep;17(9):1095-6. doi: 10.1089/cmb.2010.004p. No abstract available.

PMID:
20874397
12.

The (r)evolution of cancer genetics.

Ciccarelli FD.

BMC Biol. 2010 Jun 11;8:74. doi: 10.1186/1741-7007-8-74.

13.

Structural analysis of the RZZ complex reveals common ancestry with multisubunit vesicle tethering machinery.

Civril F, Wehenkel A, Giorgi FM, Santaguida S, Di Fonzo A, Grigorean G, Ciccarelli FD, Musacchio A.

Structure. 2010 May 12;18(5):616-26. doi: 10.1016/j.str.2010.02.014.

14.

Ultradeep sequencing of a human ultraconserved region reveals somatic and constitutional genomic instability.

De Grassi A, Segala C, Iannelli F, Volorio S, Bertario L, Radice P, Bernard L, Ciccarelli FD.

PLoS Biol. 2010 Jan;8(1):e1000275. doi: 10.1371/journal.pbio.1000275. Epub 2010 Jan 5.

15.

Global repression of cancer gene expression in a zebrafish model of melanoma is linked to epigenetic regulation.

Anelli V, Santoriello C, Distel M, Köster RW, Ciccarelli FD, Mione M.

Zebrafish. 2009 Dec;6(4):417-24. doi: 10.1089/zeb.2009.0612.

PMID:
20047469
16.

Tandem repeats modify the structure of human genes hosted in segmental duplications.

De Grassi A, Ciccarelli FD.

Genome Biol. 2009;10(12):R137. doi: 10.1186/gb-2009-10-12-r137. Epub 2009 Dec 2.

17.

Network of Cancer Genes: a web resource to analyze duplicability, orthology and network properties of cancer genes.

Syed AS, D'Antonio M, Ciccarelli FD.

Nucleic Acids Res. 2010 Jan;38(Database issue):D670-5. doi: 10.1093/nar/gkp957. Epub 2009 Nov 11.

18.

FancyGene: dynamic visualization of gene structures and protein domain architectures on genomic loci.

Rambaldi D, Ciccarelli FD.

Bioinformatics. 2009 Sep 1;25(17):2281-2. doi: 10.1093/bioinformatics/btp381. Epub 2009 Jun 19.

19.

Low duplicability and network fragility of cancer genes.

Rambaldi D, Giorgi FM, Capuani F, Ciliberto A, Ciccarelli FD.

Trends Genet. 2008 Sep;24(9):427-30. doi: 10.1016/j.tig.2008.06.003. Epub 2008 Jul 31. Review.

PMID:
18675489
20.

Non-random retention of protein-coding overlapping genes in Metazoa.

Soldà G, Suyama M, Pelucchi P, Boi S, Guffanti A, Rizzi E, Bork P, Tenchini ML, Ciccarelli FD.

BMC Genomics. 2008 Apr 16;9:174. doi: 10.1186/1471-2164-9-174.

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