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Items: 1 to 20 of 23


Systematic identification of multiple tumor types in microarray data based on hybrid differential evolution algorithm.

Lu CL, Su TC, Lin TC, Chung IF.

Technol Health Care. 2015;24 Suppl 1:S237-44. doi: 10.3233/THC-151080.


DriverDBv2: a database for human cancer driver gene research.

Chung IF, Chen CY, Su SC, Li CY, Wu KJ, Wang HW, Cheng WC.

Nucleic Acids Res. 2016 Jan 4;44(D1):D975-9. doi: 10.1093/nar/gkv1314. Epub 2015 Dec 3.


Comprehensive evaluation of fusion transcript detection algorithms and a meta-caller to combine top performing methods in paired-end RNA-seq data.

Liu S, Tsai WH, Ding Y, Chen R, Fang Z, Huo Z, Kim S, Ma T, Chang TY, Priedigkeit NM, Lee AV, Luo J, Wang HW, Chung IF, Tseng GC.

Nucleic Acids Res. 2016 Mar 18;44(5):e47. doi: 10.1093/nar/gkv1234. Epub 2015 Nov 17.


Systematic identification of multiple tumor types in microarray data based on hybrid differential evolution algorithm.

Lu CL, Su TC, Lin TC, Chung IF.

Technol Health Care. 2015 Sep 25. [Epub ahead of print]


Discovering monotonic stemness marker genes from time-series stem cell microarray data.

Wang HW, Sun HJ, Chang TY, Lo HH, Cheng WC, Tseng GC, Lin CT, Chang SJ, Pal N, Chung IF.

BMC Genomics. 2015;16 Suppl 2:S2. doi: 10.1186/1471-2164-16-S2-S2. Epub 2015 Jan 21.


Helicase and its interacting factors: regulation mechanism, characterization, structure, and application for drug design.

Huang CY, Abe Y, Ding H, Chung IF.

Biomed Res Int. 2015;2015:909047. doi: 10.1155/2015/909047. Epub 2015 Jan 28. No abstract available.


YM500v2: a small RNA sequencing (smRNA-seq) database for human cancer miRNome research.

Cheng WC, Chung IF, Tsai CF, Huang TS, Chen CY, Wang SC, Chang TY, Sun HJ, Chao JY, Cheng CC, Wu CW, Wang HW.

Nucleic Acids Res. 2015 Jan;43(Database issue):D862-7. doi: 10.1093/nar/gku1156. Epub 2014 Nov 14.


Focused ultrasound simultaneous irradiation/MRI imaging, and two-stage general kinetic model.

Huang SY, Ko CE, Chen GS, Chung IF, Yang FY.

PLoS One. 2014 Jun 20;9(6):e100280. doi: 10.1371/journal.pone.0100280. eCollection 2014.


Pharmacokinetic changes induced by focused ultrasound in glioma-bearing rats as measured by dynamic contrast-enhanced MRI.

Yang FY, Ko CE, Huang SY, Chung IF, Chen GS.

PLoS One. 2014 Mar 26;9(3):e92910. doi: 10.1371/journal.pone.0092910. eCollection 2014. Erratum in: PLoS One. 2014;9(8):e106782.


DriverDB: an exome sequencing database for cancer driver gene identification.

Cheng WC, Chung IF, Chen CY, Sun HJ, Fen JJ, Tang WC, Chang TY, Wong TT, Wang HW.

Nucleic Acids Res. 2014 Jan;42(Database issue):D1048-54. doi: 10.1093/nar/gkt1025. Epub 2013 Nov 7.


YM500: a small RNA sequencing (smRNA-seq) database for microRNA research.

Cheng WC, Chung IF, Huang TS, Chang ST, Sun HJ, Tsai CF, Liang ML, Wong TT, Wang HW.

Nucleic Acids Res. 2013 Jan;41(Database issue):D285-94. doi: 10.1093/nar/gks1238. Epub 2012 Nov 29.


Identification of amino acid propensities that are strong determinants of linear B-cell epitope using neural networks.

Su CH, Pal NR, Lin KL, Chung IF.

PLoS One. 2012;7(2):e30617. doi: 10.1371/journal.pone.0030617. Epub 2012 Feb 8. Erratum in: PLoS One. 2012;7(3). doi: 10.1371/annotation/58d3a7cb-d039-40ca-b960-bd60abfe0ae3.


Identification of single- and multiple-class specific signature genes from gene expression profiles by group marker index.

Tsai YS, Aguan K, Pal NR, Chung IF.

PLoS One. 2011;6(9):e24259. doi: 10.1371/journal.pone.0024259. Epub 2011 Sep 1.


Discovery of protein phosphorylation motifs through exploratory data analysis.

Chen YC, Aguan K, Yang CW, Wang YT, Pal NR, Chung IF.

PLoS One. 2011;6(5):e20025. doi: 10.1371/journal.pone.0020025. Epub 2011 May 25.


Overview of BioCreative II gene mention recognition.

Smith L, Tanabe LK, Ando RJ, Kuo CJ, Chung IF, Hsu CN, Lin YS, Klinger R, Friedrich CM, Ganchev K, Torii M, Liu H, Haddow B, Struble CA, Povinelli RJ, Vlachos A, Baumgartner WA Jr, Hunter L, Carpenter B, Tsai RT, Dai HJ, Liu F, Chen Y, Sun C, Katrenko S, Adriaans P, Blaschke C, Torres R, Neves M, Nakov P, Divoli A, Maña-López M, Mata J, Wilbur WJ.

Genome Biol. 2008;9 Suppl 2:S2. doi: 10.1186/gb-2008-9-s2-s2. Epub 2008 Sep 1.


Discovery of dominant and dormant genes from expression data using a novel generalization of SNR for multi-class problems.

Tsai YS, Lin CT, Tseng GC, Chung IF, Pal NR.

BMC Bioinformatics. 2008 Oct 9;9:425. doi: 10.1186/1471-2105-9-425.


Integrating high dimensional bi-directional parsing models for gene mention tagging.

Hsu CN, Chang YM, Kuo CJ, Lin YS, Huang HS, Chung IF.

Bioinformatics. 2008 Jul 1;24(13):i286-94. doi: 10.1093/bioinformatics/btn183.


A reinforcement neuro-fuzzy combiner for multiobjective control.

Lin CT, Chung IF.

IEEE Trans Syst Man Cybern B Cybern. 1999;29(6):726-44. doi: 10.1109/3477.809028.


Genetic algorithm-based neural fuzzy decision tree for mixed scheduling in ATM networks.

Lin CT, Chung IF, Pu HC, Lee' TH, Chang JY.

IEEE Trans Syst Man Cybern B Cybern. 2002;32(6):832-45. doi: 10.1109/TSMCB.2002.1049617.


Automated recognition system to classify subcellular protein localizations in images of different cell lines acquired by different imaging systems.

Tsai YS, Chung IF, Simpson JC, Lee MI, Hsiung CC, Chiu TY, Kao LS, Chiu TC, Lin CT, Lin WC, Liang SF, Lin CC.

Microsc Res Tech. 2008 Apr;71(4):305-14.

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