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Items: 1 to 20 of 31

1.
2.

H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa.

Mulder NJ, Adebiyi E, Alami R, Benkahla A, Brandful J, Doumbia S, Everett D, Fadlelmola FM, Gaboun F, Gaseitsiwe S, Ghazal H, Hazelhurst S, Hide W, Ibrahimi A, Jaufeerally Fakim Y, Jongeneel CV, Joubert F, Kassim S, Kayondo J, Kumuthini J, Lyantagaye S, Makani J, Mansour Alzohairy A, Masiga D, Moussa A, Nash O, Ouwe Missi Oukem-Boyer O, Owusu-Dabo E, Panji S, Patterton H, Radouani F, Sadki K, Seghrouchni F, Tastan Bishop Ö, Tiffin N, Ulenga N; H3ABioNet Consortium, Adebiyi M, Ahmed AE, Ahmed RI, Alearts M, Alibi M, Aron S, Baichoo S, Bendou H, Botha G, Brown D, Chimusa E, Christoffels A, Cornick J, Entfellner JB, Fields C, Fischer A, Gamieldien J, Ghedira K, Ghouila A, Ho Sui S, Isewon I, Isokpehi R, Dashti MJ, Kamng'ona A, Khetani RS, Kiran A, Kulohoma B, Kumwenda B, Lapine D, Mainzer LS, Maslamoney S, Mbiyavanga M, Meintjes A, Mlyango FE, Mmbando B, Mohammed SA, Mpangase P, Msefula C, Mtatiro SN, Mugutso D, Mungloo-Dilmohammud Z, Musicha P, Nembaware V, Osamor VC, Oyelade J, Rendon G, Salazar GA, Salifu SP, Sangeda R, Souiai O, Van Heusden P, Wele M.

Genome Res. 2016 Feb;26(2):271-7. doi: 10.1101/gr.196295.115. Epub 2015 Dec 1.

3.

TSS seq based core promoter architecture in blood feeding Tsetse fly (Glossina morsitans morsitans) vector of Trypanosomiasis.

Mwangi S, Attardo G, Suzuki Y, Aksoy S, Christoffels A.

BMC Genomics. 2015 Sep 22;16(1):722. doi: 10.1186/s12864-015-1921-6.

4.

Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms.

Mbandi SK, Hesse U, van Heusden P, Christoffels A.

BMC Bioinformatics. 2015 Feb 21;16:58. doi: 10.1186/s12859-015-0492-5.

5.

International glossina genome initiative 2004-2014: a driver for post-genomic era research on the African continent.

Christoffels A, Masiga D, Berriman M, Lehane M, Touré Y, Aksoy S.

PLoS Negl Trop Dis. 2014 Aug 21;8(8):e3024. doi: 10.1371/journal.pntd.0003024. eCollection 2014 Aug. No abstract available.

6.

Chemosensory receptors in tsetse flies provide link between chemical and behavioural ecology.

Masiga D, Obiero G, Macharia R, Mireji P, Christoffels A.

Trends Parasitol. 2014 Sep;30(9):426-8. doi: 10.1016/j.pt.2014.06.007. Epub 2014 Jul 10.

7.

Research capacity. Enabling the genomic revolution in Africa.

H3Africa Consortium, Rotimi C, Abayomi A, Abimiku A, Adabayeri VM, Adebamowo C, Adebiyi E, Ademola AD, Adeyemo A, Adu D, Affolabi D, Agongo G, Ajayi S, Akarolo-Anthony S, Akinyemi R, Akpalu A, Alberts M, Alonso Betancourt O, Alzohairy AM, Ameni G, Amodu O, Anabwani G, Andersen K, Arogundade F, Arulogun O, Asogun D, Bakare R, Balde N, Baniecki ML, Beiswanger C, Benkahla A, Bethke L, Boehnke M, Boima V, Brandful J, Brooks AI, Brosius FC, Brown C, Bucheton B, Burke DT, Burnett BG, Carrington-Lawrence S, Carstens N, Chisi J, Christoffels A, Cooper R, Cordell H, Crowther N, Croxton T, de Vries J, Derr L, Donkor P, Doumbia S, Duncanson A, Ekem I, El Sayed A, Engel ME, Enyaru JC, Everett D, Fadlelmola FM, Fakunle E, Fischbeck KH, Fischer A, Folarin O, Gamieldien J, Garry RF, Gaseitsiwe S, Gbadegesin R, Ghansah A, Giovanni M, Goesbeck P, Gomez-Olive FX, Grant DS, Grewal R, Guyer M, Hanchard NA, Happi CT, Hazelhurst S, Hennig BJ, Hertz- C, Fowler, Hide W, Hilderbrandt F, Hugo-Hamman C, Ibrahim ME, James R, Jaufeerally-Fakim Y, Jenkins C, Jentsch U, Jiang PP, Joloba M, Jongeneel V, Joubert F, Kader M, Kahn K, Kaleebu P, Kapiga SH, Kassim SK, Kasvosve I, Kayondo J, Keavney B, Kekitiinwa A, Khan SH, Kimmel P, King MC, Kleta R, Koffi M, Kopp J, Kretzler M, Kumuthini J, Kyobe S, Kyobutungi C, Lackland DT, Lacourciere KA, Landouré G, Lawlor R, Lehner T, Lesosky M, Levitt N, Littler K, Lombard Z, Loring JF, Lyantagaye S, Macleod A, Madden EB, Mahomva CR, Makani J, Mamven M, Marape M, Mardon G, Marshall P, Martin DP, Masiga D, Mason R, Mate-Kole M, Matovu E, Mayige M, Mayosi BM, Mbanya JC, McCurdy SA, McCarthy MI, McIlleron H, Mc'Ligeyo SO, Merle C, Mocumbi AO, Mondo C, Moran JV, Motala A, Moxey-Mims M, Mpoloka WS, Msefula CL, Mthiyane T, Mulder N, Mulugeta Gh, Mumba D, Musuku J, Nagdee M, Nash O, Ndiaye D, Nguyen AQ, Nicol M, Nkomazana O, Norris S, Nsangi B, Nyarko A, Nyirenda M, Obe E, Obiakor R, Oduro A, Ofori-Acquah SF, Ogah O, Ogendo S, Ohene-Frempong K, Ojo A, Olanrewaju T, Oli J, Osafo C, Ouwe Missi Oukem-Boyer O, Ovbiagele B, Owen A, Owolabi MO, Owolabi L, Owusu-Dabo E, Pare G, Parekh R, Patterton HG, Penno MB, Peterson J, Pieper R, Plange-Rhule J, Pollak M, Puzak J, Ramesar RS, Ramsay M, Rasooly R, Reddy S, Sabeti PC, Sagoe K, Salako T, Samassékou O, Sandhu MS, Sankoh O, Sarfo FS, Sarr M, Shaboodien G, Sidibe I, Simo G, Simuunza M, Smeeth L, Sobngwi E, Soodyall H, Sorgho H, Sow Bah O, Srinivasan S, Stein DJ, Susser ES, Swanepoel C, Tangwa G, Tareila A, Tastan Bishop O, Tayo B, Tiffin N, Tinto H, Tobin E, Tollman SM, Traoré M, Treadwell MJ, Troyer J, Tsimako-Johnstone M, Tukei V, Ulasi I, Ulenga N, van Rooyen B, Wachinou AP, Waddy SP, Wade A, Wayengera M, Whitworth J, Wideroff L, Winkler CA, Winnicki S, Wonkam A, Yewondwos M, sen T, Yozwiak N, Zar H.

Science. 2014 Jun 20;344(6190):1346-8. doi: 10.1126/science.1251546. No abstract available.

8.

Challenges of biobanking in South Africa to facilitate indigenous research in an environment burdened with human immunodeficiency virus, tuberculosis, and emerging noncommunicable diseases.

Abayomi A, Christoffels A, Grewal R, Karam LA, Rossouw C, Staunton C, Swanepoel C, van Rooyen B.

Biopreserv Biobank. 2013 Dec;11(6):347-54. doi: 10.1089/bio.2013.0049. Epub 2013 Nov 22. Review.

9.

Odorant and gustatory receptors in the tsetse fly Glossina morsitans morsitans.

Obiero GF, Mireji PO, Nyanjom SR, Christoffels A, Robertson HM, Masiga DK.

PLoS Negl Trop Dis. 2014 Apr 24;8(4):e2663. doi: 10.1371/journal.pntd.0002663. eCollection 2014 Apr.

10.

Human African trypanosomiasis research gets a boost: unraveling the tsetse genome.

Aksoy S, Attardo G, Berriman M, Christoffels A, Lehane M, Masiga D, Toure Y.

PLoS Negl Trop Dis. 2014 Apr 24;8(4):e2624. doi: 10.1371/journal.pntd.0002624. eCollection 2014 Apr. No abstract available.

11.

A glance at quality score: implication for de novo transcriptome reconstruction of Illumina reads.

Mbandi SK, Hesse U, Rees DJ, Christoffels A.

Front Genet. 2014 Feb 12;5:17. doi: 10.3389/fgene.2014.00017. eCollection 2014.

12.

Evolution and Structural Analyses of Glossina morsitans (Diptera; Glossinidae) Tetraspanins.

Murungi EK, Kariithi HM, Adunga V, Obonyo M, Christoffels A.

Insects. 2014 Nov 12;5(4):885-908. doi: 10.3390/insects5040885.

13.

A comparative analysis of trypanosomatid SNARE proteins.

Murungi E, Barlow LD, Venkatesh D, Adung'a VO, Dacks JB, Field MC, Christoffels A.

Parasitol Int. 2014 Apr;63(2):341-8. doi: 10.1016/j.parint.2013.11.002. Epub 2013 Nov 22.

14.

The African coelacanth genome provides insights into tetrapod evolution.

Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, Maccallum I, Braasch I, Manousaki T, Schneider I, Rohner N, Organ C, Chalopin D, Smith JJ, Robinson M, Dorrington RA, Gerdol M, Aken B, Biscotti MA, Barucca M, Baurain D, Berlin AM, Blatch GL, Buonocore F, Burmester T, Campbell MS, Canapa A, Cannon JP, Christoffels A, De Moro G, Edkins AL, Fan L, Fausto AM, Feiner N, Forconi M, Gamieldien J, Gnerre S, Gnirke A, Goldstone JV, Haerty W, Hahn ME, Hesse U, Hoffmann S, Johnson J, Karchner SI, Kuraku S, Lara M, Levin JZ, Litman GW, Mauceli E, Miyake T, Mueller MG, Nelson DR, Nitsche A, Olmo E, Ota T, Pallavicini A, Panji S, Picone B, Ponting CP, Prohaska SJ, Przybylski D, Saha NR, Ravi V, Ribeiro FJ, Sauka-Spengler T, Scapigliati G, Searle SM, Sharpe T, Simakov O, Stadler PF, Stegeman JJ, Sumiyama K, Tabbaa D, Tafer H, Turner-Maier J, van Heusden P, White S, Williams L, Yandell M, Brinkmann H, Volff JN, Tabin CJ, Shubin N, Schartl M, Jaffe DB, Postlethwait JH, Venkatesh B, Di Palma F, Lander ES, Meyer A, Lindblad-Toh K.

Nature. 2013 Apr 18;496(7445):311-6. doi: 10.1038/nature12027.

15.

DAMPD: a manually curated antimicrobial peptide database.

Seshadri Sundararajan V, Gabere MN, Pretorius A, Adam S, Christoffels A, Lehväslaiho M, Archer JA, Bajic VB.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1108-12. doi: 10.1093/nar/gkr1063. Epub 2011 Nov 21.

16.

Genome-wide SNP identification by high-throughput sequencing and selective mapping allows sequence assembly positioning using a framework genetic linkage map.

Celton JM, Christoffels A, Sargent DJ, Xu X, Rees DJ.

BMC Biol. 2010 Dec 30;8:155. doi: 10.1186/1741-7007-8-155.

17.

The genome of woodland strawberry (Fragaria vesca).

Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton JM, Rees DJ, Williams KP, Holt SH, Ruiz Rojas JJ, Chatterjee M, Liu B, Silva H, Meisel L, Adato A, Filichkin SA, Troggio M, Viola R, Ashman TL, Wang H, Dharmawardhana P, Elser J, Raja R, Priest HD, Bryant DW Jr, Fox SE, Givan SA, Wilhelm LJ, Naithani S, Christoffels A, Salama DY, Carter J, Lopez Girona E, Zdepski A, Wang W, Kerstetter RA, Schwab W, Korban SS, Davik J, Monfort A, Denoyes-Rothan B, Arus P, Mittler R, Flinn B, Aharoni A, Bennetzen JL, Salzberg SL, Dickerman AW, Velasco R, Borodovsky M, Veilleux RE, Folta KM.

Nat Genet. 2011 Feb;43(2):109-16. doi: 10.1038/ng.740. Epub 2010 Dec 26.

18.

DDPC: Dragon Database of Genes associated with Prostate Cancer.

Maqungo M, Kaur M, Kwofie SK, Radovanovic A, Schaefer U, Schmeier S, Oppon E, Christoffels A, Bajic VB.

Nucleic Acids Res. 2011 Jan;39(Database issue):D980-5. doi: 10.1093/nar/gkq849. Epub 2010 Sep 29.

19.

DDEC: Dragon database of genes implicated in esophageal cancer.

Essack M, Radovanovic A, Schaefer U, Schmeier S, Seshadri SV, Christoffels A, Kaur M, Bajic VB.

BMC Cancer. 2009 Jul 6;9:219. doi: 10.1186/1471-2407-9-219.

20.

Expansion mechanisms and functional annotations of hypothetical genes in the rice genome.

Jiang SY, Christoffels A, Ramamoorthy R, Ramachandran S.

Plant Physiol. 2009 Aug;150(4):1997-2008. doi: 10.1104/pp.109.139402. Epub 2009 Jun 17.

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