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Results: 1 to 20 of 24

1.

Deep transcriptome sequencing provides new insights into the structural and functional organization of the wheat genome.

Pingault L, Choulet F, Alberti A, Glover N, Wincker P, Feuillet C, Paux E.

Genome Biol. 2015 Feb 10;16:29. doi: 10.1186/s13059-015-0601-9.

2.

Organization and evolution of transposable elements along the bread wheat chromosome 3B.

Daron J, Glover N, Pingault L, Theil S, Jamilloux V, Paux E, Barbe V, Mangenot S, Alberti A, Wincker P, Quesneville H, Feuillet C, Choulet F.

Genome Biol. 2014;15(12):546.

3.

Transcriptome and allele specificity associated with a 3BL locus for Fusarium crown rot resistance in bread wheat.

Ma J, Stiller J, Zhao Q, Feng Q, Cavanagh C, Wang P, Gardiner D, Choulet F, Feuillet C, Zheng YL, Wei Y, Yan G, Han B, Manners JM, Liu C.

PLoS One. 2014 Nov 18;9(11):e113309. doi: 10.1371/journal.pone.0113309. eCollection 2014.

4.

QTug.sau-3B is a major quantitative trait locus for wheat hexaploidization.

Hao M, Luo J, Zeng D, Zhang L, Ning S, Yuan Z, Yan Z, Zhang H, Zheng Y, Feuillet C, Choulet F, Yen Y, Zhang L, Liu D.

G3 (Bethesda). 2014 Aug 15;4(10):1943-53. doi: 10.1534/g3.114.013078.

5.

Structural and functional partitioning of bread wheat chromosome 3B.

Choulet F, Alberti A, Theil S, Glover N, Barbe V, Daron J, Pingault L, Sourdille P, Couloux A, Paux E, Leroy P, Mangenot S, Guilhot N, Le Gouis J, Balfourier F, Alaux M, Jamilloux V, Poulain J, Durand C, Bellec A, Gaspin C, Safar J, Dolezel J, Rogers J, Vandepoele K, Aury JM, Mayer K, Berges H, Quesneville H, Wincker P, Feuillet C.

Science. 2014 Jul 18;345(6194):1249721. doi: 10.1126/science.1249721.

6.

Meiotic gene evolution: can you teach a new dog new tricks?

Lloyd AH, Ranoux M, Vautrin S, Glover N, Fourment J, Charif D, Choulet F, Lassalle G, Marande W, Tran J, Granier F, Pingault L, Remay A, Marquis C, Belcram H, Chalhoub B, Feuillet C, Bergès H, Sourdille P, Jenczewski E.

Mol Biol Evol. 2014 Jul;31(7):1724-7. doi: 10.1093/molbev/msu119. Epub 2014 Apr 1.

7.

High-resolution analysis of a QTL for resistance to Stagonospora nodorum glume blotch in wheat reveals presence of two distinct resistance loci in the target interval.

Shatalina M, Messmer M, Feuillet C, Mascher F, Paux E, Choulet F, Wicker T, Keller B.

Theor Appl Genet. 2014 Mar;127(3):573-86. doi: 10.1007/s00122-013-2240-4. Epub 2013 Dec 4.

PMID:
24306318
8.

A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat.

Philippe R, Paux E, Bertin I, Sourdille P, Choulet F, Laugier C, Simková H, Safář J, Bellec A, Vautrin S, Frenkel Z, Cattonaro F, Magni F, Scalabrin S, Martis MM, Mayer KF, Korol A, Bergès H, Doležel J, Feuillet C.

Genome Biol. 2013 Jun 25;14(6):R64. doi: 10.1186/gb-2013-14-6-r64.

9.

dbWFA: a web-based database for functional annotation of Triticum aestivum transcripts.

Vincent J, Dai Z, Ravel C, Choulet F, Mouzeyar S, Bouzidi MF, Agier M, Martre P.

Database (Oxford). 2013 May 9;2013:bat014. doi: 10.1093/database/bat014. Print 2013.

10.

Wheat centromeric retrotransposons: the new ones take a major role in centromeric structure.

Li B, Choulet F, Heng Y, Hao W, Paux E, Liu Z, Yue W, Jin W, Feuillet C, Zhang X.

Plant J. 2013 Mar;73(6):952-65. doi: 10.1111/tpj.12086. Epub 2013 Feb 20.

PMID:
23253213
11.

Intraspecific sequence comparisons reveal similar rates of non-collinear gene insertion in the B and D genomes of bread wheat.

Bartoš J, Vlček C, Choulet F, Džunková M, Cviková K, Safář J, Simková H, Pačes J, Strnad H, Sourdille P, Bergès H, Cattonaro F, Feuillet C, Doležel J.

BMC Plant Biol. 2012 Aug 30;12:155.

12.

TriAnnot: A Versatile and High Performance Pipeline for the Automated Annotation of Plant Genomes.

Leroy P, Guilhot N, Sakai H, Bernard A, Choulet F, Theil S, Reboux S, Amano N, Flutre T, Pelegrin C, Ohyanagi H, Seidel M, Giacomoni F, Reichstadt M, Alaux M, Gicquello E, Legeai F, Cerutti L, Numa H, Tanaka T, Mayer K, Itoh T, Quesneville H, Feuillet C.

Front Plant Sci. 2012 Jan 31;3:5. doi: 10.3389/fpls.2012.00005. eCollection 2012.

13.

Whole Genome Profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome.

Philippe R, Choulet F, Paux E, van Oeveren J, Tang J, Wittenberg AH, Janssen A, van Eijk MJ, Stormo K, Alberti A, Wincker P, Akhunov E, van der Vossen E, Feuillet C.

BMC Genomics. 2012 Jan 30;13:47. doi: 10.1186/1471-2164-13-47.

14.

A 3,000-loci transcription map of chromosome 3B unravels the structural and functional features of gene islands in hexaploid wheat.

Rustenholz C, Choulet F, Laugier C, Safár J, Simková H, Dolezel J, Magni F, Scalabrin S, Cattonaro F, Vautrin S, Bellec A, Bergès H, Feuillet C, Paux E.

Plant Physiol. 2011 Dec;157(4):1596-608. doi: 10.1104/pp.111.183921. Epub 2011 Oct 27.

15.

Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives.

Wicker T, Mayer KF, Gundlach H, Martis M, Steuernagel B, Scholz U, Simková H, Kubaláková M, Choulet F, Taudien S, Platzer M, Feuillet C, Fahima T, Budak H, Dolezel J, Keller B, Stein N.

Plant Cell. 2011 May;23(5):1706-18. doi: 10.1105/tpc.111.086629. Epub 2011 May 27.

16.

Specific patterns of gene space organisation revealed in wheat by using the combination of barley and wheat genomic resources.

Rustenholz C, Hedley PE, Morris J, Choulet F, Feuillet C, Waugh R, Paux E.

BMC Genomics. 2010 Dec 19;11:714. doi: 10.1186/1471-2164-11-714.

17.

Variation in crossover rates across a 3-Mb contig of bread wheat (Triticum aestivum) reveals the presence of a meiotic recombination hotspot.

Saintenac C, Faure S, Remay A, Choulet F, Ravel C, Paux E, Balfourier F, Feuillet C, Sourdille P.

Chromosoma. 2011 Apr;120(2):185-98. doi: 10.1007/s00412-010-0302-9. Epub 2010 Dec 16.

PMID:
21161258
18.

Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces.

Choulet F, Wicker T, Rustenholz C, Paux E, Salse J, Leroy P, Schlub S, Le Paslier MC, Magdelenat G, Gonthier C, Couloux A, Budak H, Breen J, Pumphrey M, Liu S, Kong X, Jia J, Gut M, Brunel D, Anderson JA, Gill BS, Appels R, Keller B, Feuillet C.

Plant Cell. 2010 Jun;22(6):1686-701. doi: 10.1105/tpc.110.074187. Epub 2010 Jun 25.

19.

Genetic diversity and linkage disequilibrium studies on a 3.1-Mb genomic region of chromosome 3B in European and Asian bread wheat (Triticum aestivum L.) populations.

Hao CY, Perretant MR, Choulet F, Wang LF, Paux E, Sourdille P, Zhang XY, Feuillet C, Balfourier F.

Theor Appl Genet. 2010 Nov;121(7):1209-25. doi: 10.1007/s00122-010-1382-x. Epub 2010 Jun 18.

PMID:
20559816
20.

Insertion site-based polymorphism markers open new perspectives for genome saturation and marker-assisted selection in wheat.

Paux E, Faure S, Choulet F, Roger D, Gauthier V, Martinant JP, Sourdille P, Balfourier F, Le Paslier MC, Chauveau A, Cakir M, Gandon B, Feuillet C.

Plant Biotechnol J. 2010 Feb;8(2):196-210. doi: 10.1111/j.1467-7652.2009.00477.x.

PMID:
20078842
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