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Results: 10

1.

Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals.

Yuri T, Kimball RT, Harshman J, Bowie RC, Braun MJ, Chojnowski JL, Han KL, Hackett SJ, Huddleston CJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, Witt CC, Braun EL.

Biology (Basel). 2013 Mar 13;2(1):419-44. doi: 10.3390/biology2010419.

PMID:
24832669
[PubMed]
Free PMC Article
2.

An unbiased approach to identify genes involved in development in a turtle with temperature-dependent sex determination.

Chojnowski JL, Braun EL.

BMC Genomics. 2012 Jul 15;13:308. doi: 10.1186/1471-2164-13-308.

PMID:
22793670
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Homoplastic microinversions and the avian tree of life.

Braun EL, Kimball RT, Han KL, Iuhasz-Velez NR, Bonilla AJ, Chojnowski JL, Smith JV, Bowie RC, Braun MJ, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Witt CC, Yuri T.

BMC Evol Biol. 2011 May 25;11:141. doi: 10.1186/1471-2148-11-141.

PMID:
21612607
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Are transposable element insertions homoplasy free?: an examination using the avian tree of life.

Han KL, Braun EL, Kimball RT, Reddy S, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T.

Syst Biol. 2011 May;60(3):375-86. doi: 10.1093/sysbio/syq100. Epub 2011 Feb 8. No abstract available.

PMID:
21303823
[PubMed - indexed for MEDLINE]
5.

A well-tested set of primers to amplify regions spread across the avian genome.

Kimball RT, Braun EL, Barker FK, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Han KL, Harshman J, Heimer-Torres V, Holznagel W, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Smith JV, Witt CC, Yuri T.

Mol Phylogenet Evol. 2009 Mar;50(3):654-60. doi: 10.1016/j.ympev.2008.11.018. Epub 2008 Dec 6. No abstract available.

PMID:
19084073
[PubMed - indexed for MEDLINE]
6.

Turtle isochore structure is intermediate between amphibians and other amniotes.

Chojnowski JL, Braun EL.

Integr Comp Biol. 2008 Oct;48(4):454-62. doi: 10.1093/icb/icn062. Epub 2008 Jun 24.

PMID:
21669806
[PubMed]
Free Article
7.

Phylogenomic evidence for multiple losses of flight in ratite birds.

Harshman J, Braun EL, Braun MJ, Huddleston CJ, Bowie RC, Chojnowski JL, Hackett SJ, Han KL, Kimball RT, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, Steppan SJ, Witt CC, Yuri T.

Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13462-7. doi: 10.1073/pnas.0803242105. Epub 2008 Sep 2.

PMID:
18765814
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A phylogenomic study of birds reveals their evolutionary history.

Hackett SJ, Kimball RT, Reddy S, Bowie RC, Braun EL, Braun MJ, Chojnowski JL, Cox WA, Han KL, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T.

Science. 2008 Jun 27;320(5884):1763-8. doi: 10.1126/science.1157704.

PMID:
18583609
[PubMed - indexed for MEDLINE]
Free Article
9.

Introns outperform exons in analyses of basal avian phylogeny using clathrin heavy chain genes.

Chojnowski JL, Kimball RT, Braun EL.

Gene. 2008 Feb 29;410(1):89-96. doi: 10.1016/j.gene.2007.11.016. Epub 2007 Dec 7.

PMID:
18191344
[PubMed - indexed for MEDLINE]
10.

Patterns of vertebrate isochore evolution revealed by comparison of expressed mammalian, avian, and crocodilian genes.

Chojnowski JL, Franklin J, Katsu Y, Iguchi T, Guillette LJ Jr, Kimball RT, Braun EL.

J Mol Evol. 2007 Sep;65(3):259-66. Epub 2007 Aug 3.

PMID:
17674077
[PubMed - indexed for MEDLINE]

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