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Results: 1 to 20 of 106

1.

Preparation of Mononucleosomal Templates for Analysis of Transcription with RNA Polymerase Using spFRET.

Kudryashova KS, Chertkov OV, Nikitin DV, Pestov NA, Kulaeva OI, Efremenko AV, Solonin AS, Kirpichnikov MP, Studitsky VM, Feofanov AV.

Methods Mol Biol. 2015;1288:395-412. doi: 10.1007/978-1-4939-2474-5_23.

PMID:
25827893
2.

High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater.

Ramsay BD, Hwang C, Woo HL, Carroll SL, Lucas S, Han J, Lapidus AL, Cheng JF, Goodwin LA, Pitluck S, Peters L, Chertkov O, Held B, Detter JC, Han CS, Tapia R, Land ML, Hauser LJ, Kyrpides NC, Ivanova NN, Mikhailova N, Pagani I, Woyke T, Arkin AP, Dehal P, Chivian D, Criddle CS, Wu W, Chakraborty R, Hazen TC, Fields MW.

Genome Announc. 2015 Mar 12;3(2). pii: e00092-15. doi: 10.1128/genomeA.00092-15.

3.

Genomic sequences of six botulinum neurotoxin-producing strains representing three clostridial species illustrate the mobility and diversity of botulinum neurotoxin genes.

Smith TJ, Hill KK, Xie G, Foley BT, Williamson CH, Foster JT, Johnson SL, Chertkov O, Teshima H, Gibbons HS, Johnsky LA, Karavis MA, Smith LA.

Infect Genet Evol. 2015 Mar;30:102-13. doi: 10.1016/j.meegid.2014.12.002. Epub 2014 Dec 6.

PMID:
25489752
4.

Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Enteritidis Strain SEJ.

Bishop-Lilly KA, Frey KG, Daligault HE, Davenport KW, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Jaissle J, Koroleva GI, Ladner JT, Minogue TD, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01084-14. doi: 10.1128/genomeA.01084-14.

5.

Full-Genome Assembly of Reference Strain Providencia stuartii ATCC 33672.

Frey KG, Bishop-Lilly KA, Daligault HE, Davenport KW, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Jaissle J, Koroleva GI, Ladner JT, Minogue TD, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01082-14. doi: 10.1128/genomeA.01082-14.

6.

Draft Genome Assemblies of Enterobacter aerogenes CDC 6003-71, Enterobacter cloacae CDC 442-68, and Pantoea agglomerans UA 0804-01.

Minogue TD, Daligault HE, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01073-14. doi: 10.1128/genomeA.01073-14.

7.

Draft Genome Assemblies of Proteus mirabilis ATCC 7002 and Proteus vulgaris ATCC 49132.

Minogue TD, Daligault HE, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01064-14. doi: 10.1128/genomeA.01064-14.

8.

Complete Genome Assembly of Escherichia coli ATCC 25922, a Serotype O6 Reference Strain.

Minogue TD, Daligault HA, Davenport KW, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Chertkov O, Coyne SR, Freitas T, Frey KG, Gibbons HS, Jaissle J, Redden CL, Rosenzweig CN, Xu Y, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00969-14. doi: 10.1128/genomeA.00969-14.

9.

Complete Genome Assembly of Enterococcus faecalis 29212, a Laboratory Reference Strain.

Minogue TD, Daligault HE, Davenport KW, Broomall SM, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Rosenzweig CN, Xu Y, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00968-14. doi: 10.1128/genomeA.00968-14.

10.

Complete Genome Assembly of Reference Strain Ochrobactrum anthropi ATCC 49687.

Minogue TD, Daligault HA, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Chertkov O, Coyne SR, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00962-14. doi: 10.1128/genomeA.00962-14.

11.

Draft Genome Assembly of Neisseria lactamica Type Strain A7515.

Minogue TD, Daligault HA, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Chertkov O, Coyne SR, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00951-14. doi: 10.1128/genomeA.00951-14.

12.

Draft Genome Assembly of Pseudomonas aeruginosa Quality Control Reference Strain Boston 41501.

Minogue TD, Daligault HE, Davenport KW, Broomall SM, Bruce DC, Chain PS, Coyne SR, Gibbons HS, Jaissle J, Chertkov O, Freitas T, Rosenzweig CN, Xu Y, Johnson SL.

Genome Announc. 2014 Oct 2;2(5). pii: e00960-14. doi: 10.1128/genomeA.00960-14.

13.

Complete Genome Assembly of Streptococcus pyogenes ATCC 19615, a Group A β-Hemolytic Reference Strain.

Minogue TD, Daligault HA, Davenport KW, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Chertkov O, Coyne SR, Freitas T, Frey KG, Gibbons HS, Jaissle J, Redden CL, Rosenzweig CN, Xu Y, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00976-14. doi: 10.1128/genomeA.00976-14.

14.

Whole-genome sequences of 24 Brucella strains.

Minogue TD, Daligault HA, Davenport KW, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Chertkov O, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Palacios GF, Redden CL, Rosenzweig CN, Scholz MB, Xu Y, Johnson SL.

Genome Announc. 2014 Sep 18;2(5). pii: e00915-14. doi: 10.1128/genomeA.00915-14.

15.

Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment.

Breider S, Teshima H, Petersen J, Chertkov O, Dalingault H, Chen A, Pati A, Ivanova N, Lapidus A, Goodwin LA, Chain P, Detter JC, Rohde M, Tindall BJ, Kyrpides NC, Woyke T, Simon M, Göker M, Klenk HP, Brinkhoff T.

Stand Genomic Sci. 2014 Jan 25;9(3):687-703. doi: 10.4056/sigs.3828824. eCollection 2014 Jun 15.

16.

Complete genome sequence of Mesorhizobium ciceri bv. biserrulae type strain (WSM1271(T)).

Nandasena K, Yates R, Tiwari R, O'Hara G, Howieson J, Ninawi M, Chertkov O, Detter C, Tapia R, Han S, Woyke T, Pitluck S, Nolan M, Land M, Liolios K, Pati A, Copeland A, Kyrpides N, Ivanova N, Goodwin L, Meenakshi U, Reeve W.

Stand Genomic Sci. 2013 Dec 31;9(3):462-72. doi: 10.4056/sigs.4458283. eCollection 2014 Jun 15.

17.

The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles.

Hovde BT, Starkenburg SR, Hunsperger HM, Mercer LD, Deodato CR, Jha RK, Chertkov O, Monnat RJ Jr, Cattolico RA.

BMC Genomics. 2014 Jul 17;15:604. doi: 10.1186/1471-2164-15-604.

18.

Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production.

Khanna N, Ghosh AK, Huntemann M, Deshpande S, Han J, Chen A, Kyrpides N, Mavrommatis K, Szeto E, Markowitz V, Ivanova N, Pagani I, Pati A, Pitluck S, Nolan M, Woyke T, Teshima H, Chertkov O, Daligault H, Davenport K, Gu W, Munk C, Zhang X, Bruce D, Detter C, Xu Y, Quintana B, Reitenga K, Kunde Y, Green L, Erkkila T, Han C, Brambilla EM, Lang E, Klenk HP, Goodwin L, Chain P, Das D.

Stand Genomic Sci. 2013 Dec 15;9(2):359-69. doi: 10.4056/sigs.4348035. eCollection 2013 Dec 20.

19.

Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075(T.).

Reeve W, Nandasena K, Yates R, Tiwari R, O'Hara G, Ninawi M, Chertkov O, Goodwin L, Bruce D, Detter C, Tapia R, Han S, Woyke T, Pitluck S, Nolan M, Land M, Copeland A, Liolios K, Pati A, Mavromatis K, Markowitz V, Kyrpides N, Ivanova N, Goodwin L, Meenakshi U, Howieson J.

Stand Genomic Sci. 2013 Dec 15;9(2):294-303. doi: 10.4056/sigs.4538264. eCollection 2013 Dec 20.

20.

A pangenomic analysis of the Nannochloropsis organellar genomes reveals novel genetic variations in key metabolic genes.

Starkenburg SR, Kwon KJ, Jha RK, McKay C, Jacobs M, Chertkov O, Twary S, Rocap G, Cattolico RA.

BMC Genomics. 2014 Mar 19;15:212. doi: 10.1186/1471-2164-15-212.

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