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Alview: Portable Software for Viewing Sequence Reads in BAM Formatted Files.

Finney RP, Chen QR, Nguyen CV, Hsu CH, Yan C, Hu Y, Abawi M, Bian X, Meerzaman DM.

Cancer Inform. 2015 Sep 13;14:105-7. doi: 10.4137/CIN.S26470. eCollection 2015. Review.


Transcriptome Profiling of Pediatric Core Binding Factor AML.

Hsu CH, Nguyen C, Yan C, Ries RE, Chen QR, Hu Y, Ostronoff F, Stirewalt DL, Komatsoulis G, Levy S, Meerzaman D, Meshinchi S.

PLoS One. 2015 Sep 23;10(9):e0138782. doi: 10.1371/journal.pone.0138782. eCollection 2015.


TCF21 hypermethylation in genetically quiescent clear cell sarcoma of the kidney.

Gooskens SL, Gadd S, Guidry Auvil JM, Gerhard DS, Khan J, Patidar R, Meerzaman D, Chen QR, Hsu CH, Yan C, Nguyen C, Hu Y, Mullighan CG, Ma J, Jennings LJ, de Krijger RR, van den Heuvel-Eibrink MM, Smith MA, Ross N, Gastier-Foster JM, Perlman EJ.

Oncotarget. 2015 Jun 30;6(18):15828-41.


Assessment of a panel of tumor markers for the differential diagnosis of benign and malignant effusions by well-based reverse phase protein array.

Braunschweig T, Chung JY, Choi CH, Cho H, Chen QR, Xie R, Perry C, Khan J, Hewitt SM.

Diagn Pathol. 2015 May 29;10:53. doi: 10.1186/s13000-015-0290-4.


[Sequence Analysis of the UGT1A1 Gene Untranslated Region in Chinese Han Population].

Sun SC, Chen QR, Chen X, Peng YS.

Zhongguo Shi Yan Xue Ye Xue Za Zhi. 2015 Apr;23(2):522-5. doi: 10.7534/j.issn.1009-2137.2015.02.044. Chinese.


Generating a focused view of disease ontology cancer terms for pan-cancer data integration and analysis.

Wu TJ, Schriml LM, Chen QR, Colbert M, Crichton DJ, Finney R, Hu Y, Kibbe WA, Kincaid H, Meerzaman D, Mitraka E, Pan Y, Smith KM, Srivastava S, Ward S, Yan C, Mazumder R.

Database (Oxford). 2015 Apr 4;2015:bav032. doi: 10.1093/database/bav032. Print 2015.


Recurrent DGCR8, DROSHA, and SIX homeodomain mutations in favorable histology Wilms tumors.

Walz AL, Ooms A, Gadd S, Gerhard DS, Smith MA, Guidry Auvil JM, Meerzaman D, Chen QR, Hsu CH, Yan C, Nguyen C, Hu Y, Bowlby R, Brooks D, Ma Y, Mungall AJ, Moore RA, Schein J, Marra MA, Huff V, Dome JS, Chi YY, Mullighan CG, Ma J, Wheeler DA, Hampton OA, Jafari N, Ross N, Gastier-Foster JM, Perlman EJ.

Cancer Cell. 2015 Feb 9;27(2):286-97. doi: 10.1016/j.ccell.2015.01.003. Erratum in: Cancer Cell. 2015 Mar 9;27(3):426. Guidry Auvil, Jamie M [corrected to Guidry Auvil, Jaime M].


Multiple cavernous hemangiomas of the lung.

Chen QR, Li H, Hu B, Jin ML, Guo J.

Ann Thorac Surg. 2014 Nov;98(5):1835-7. doi: 10.1016/j.athoracsur.2013.12.059. Epub 2014 Oct 30.


Systematic genetic analysis identifies Cis-eQTL target genes associated with glioblastoma patient survival.

Chen QR, Hu Y, Yan C, Buetow K, Meerzaman D.

PLoS One. 2014 Aug 18;9(8):e105393. doi: 10.1371/journal.pone.0105393. eCollection 2014.


Allograft inflammatory factor-1 alleviates liver disease of BALB/c mice infected with Schistosoma japonicum.

Chen QR, Guan F, Song SM, Jin JK, Lei DS, Chen CM, Lei JH, Chen ZW, Niu AO.

Parasitol Res. 2014 Jul;113(7):2629-39. doi: 10.1007/s00436-014-3915-8. Epub 2014 May 10.


Genome-wide transcriptional sequencing identifies novel mutations in metabolic genes in human hepatocellular carcinoma.

Meerzaman DM, Yan C, Chen QR, Edmonson MN, Schaefer CF, Clifford RJ, Dunn BK, Dong L, Finney RP, Cultraro CM, Hu Y, Yang Z, Nguyen CV, Kelley JM, Cai S, Zhang H, Zhang J, Wilson R, Messmer L, Chung YH, Kim JA, Park NH, Lyu MS, Song IH, Komatsoulis G, Buetow KH.

Cancer Genomics Proteomics. 2014 Jan-Feb;11(1):1-12.


OmicCircos: A Simple-to-Use R Package for the Circular Visualization of Multidimensional Omics Data.

Hu Y, Yan C, Hsu CH, Chen QR, Niu K, Komatsoulis GA, Meerzaman D.

Cancer Inform. 2014 Jan 16;13:13-20. doi: 10.4137/CIN.S13495. eCollection 2014.


[Early removal of the chest tube after lobectomies: a prospective randomized control study].

Zhang Y, Li H, Hu B, Hou SC, Li T, Miao JB, Wang Y, You B, Fu YL, Chen QR, Zhang WQ, Chen S, Hu XX.

Zhonghua Wai Ke Za Zhi. 2013 Jun 1;51(6):533-7. Chinese.


[Update on hepatocellular nodular lesions].

Chen QR, Wei SZ.

Zhonghua Bing Li Xue Za Zhi. 2013 Jun;42(6):412-6. doi: 10.3760/cma.j.issn.0529-5807.2013.06.017. Chinese. No abstract available.


Pneumonia relevant to lung transplantation and pathogen distribution.

He X, Dai HP, Chen QR, Miao JB, Sun B, Bao N, Hu B, Li H, Wu AS, Ban CJ, Ge SJ, Wang C, Hou SC.

Chin Med J (Engl). 2013;126(17):3209-14.


[Mutation analysis of UGT1A1 gene in patients with unconjugated hyperbilirubinemia].

Sun SC, Zhou ZM, Chen QR, Peng YS, Tu CQ.

Zhonghua Yi Xue Yi Chuan Xue Za Zhi. 2013 Aug;30(4):425-8. doi: 10.3760/cma.j.issn.1003-9406.2013.04.010. Chinese.


Multi-SNP analysis of GWAS data identifies pathways associated with nonalcoholic fatty liver disease.

Chen QR, Braun R, Hu Y, Yan C, Brunt EM, Meerzaman D, Sanyal AJ, Buetow K.

PLoS One. 2013 Jul 19;8(7):e65982. doi: 10.1371/journal.pone.0065982. Print 2013.


Discovery analysis of TCGA data reveals association between germline genotype and survival in ovarian cancer patients.

Braun R, Finney R, Yan C, Chen QR, Hu Y, Edmonson M, Meerzaman D, Buetow K.

PLoS One. 2013;8(3):e55037. doi: 10.1371/journal.pone.0055037. Epub 2013 Mar 21.


[Polymorphism of genes encoding homocysteine metabolism-related enzymes and risk for cardio-cerebrovascular disease].

Chen QR, Jiang SQ, Xu XP.

Zhonghua Xin Xue Guan Bing Za Zhi. 2012 Sep;40(9):801-3. Review. Chinese. No abstract available.


Treating metastatic disease: Which survival model is best suited for the clinic?

Forsberg JA, Sjoberg D, Chen QR, Vickers A, Healey JH.

Clin Orthop Relat Res. 2013 Mar;471(3):843-50. doi: 10.1007/s11999-012-2577-z.

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