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Origin and ecological selection of core and food-specific bacterial communities associated with meat and seafood spoilage.

Chaillou S, Chaulot-Talmon A, Caekebeke H, Cardinal M, Christieans S, Denis C, Hélène Desmonts M, Dousset X, Feurer C, Hamon E, Joffraud JJ, La Carbona S, Leroi F, Leroy S, Lorre S, Macé S, Pilet MF, Prévost H, Rivollier M, Roux D, Talon R, Zagorec M, Champomier-Vergès MC.

ISME J. 2015 May;9(5):1105-18. doi: 10.1038/ismej.2014.202. Epub 2014 Oct 21.


A polyphasic approach to study the dynamics of microbial population of an organic wheat sourdough during its conversion to gluten-free sourdough.

Lhomme E, Mezaize S, Ducasse MB, Chiron H, Champomier-Vergès MC, Chaillou S, Zagorec M, Dousset X, Onno B.

Int Microbiol. 2014 Mar;17(1):1-9.


High genetic diversity among strains of the unindustrialized lactic acid bacterium Carnobacterium maltaromaticum in dairy products as revealed by multilocus sequence typing.

Rahman A, Cailliez-Grimal C, Bontemps C, Payot S, Chaillou S, Revol-Junelles AM, Borges F.

Appl Environ Microbiol. 2014 Jul;80(13):3920-9. doi: 10.1128/AEM.00681-14. Epub 2014 Apr 18.


Nitrate transport and signalling in Arabidopsis.

Krapp A, David LC, Chardin C, Girin T, Marmagne A, Leprince AS, Chaillou S, Ferrario-Méry S, Meyer C, Daniel-Vedele F.

J Exp Bot. 2014 Mar;65(3):789-98. doi: 10.1093/jxb/eru001. Review.


Population genetics of Lactobacillus sakei reveals three lineages with distinct evolutionary histories.

Chaillou S, Lucquin I, Najjari A, Zagorec M, Champomier-Vergès MC.

PLoS One. 2013 Sep 19;8(9):e73253. doi: 10.1371/journal.pone.0073253. eCollection 2013.


Quantification and efficiency of Lactobacillus sakei strain mixtures used as protective cultures in ground beef.

Chaillou S, Christieans S, Rivollier M, Lucquin I, Champomier-Vergès MC, Zagorec M.

Meat Sci. 2014 Jul;97(3):332-8. doi: 10.1016/j.meatsci.2013.08.009. Epub 2013 Sep 4.


Complete Chromosome Sequence of Carnobacterium maltaromaticum LMA 28.

Cailliez-Grimal C, Chaillou S, Anba-Mondoloni J, Loux V, Afzal MI, Rahman A, Kergourlay G, Champomier-Vergès MC, Zagorec M, Dalgaard P, Leisner JJ, Prévost H, Revol-Junelles AM, Borges F.

Genome Announc. 2013 Jan;1(1). pii: e00115-12. doi: 10.1128/genomeA.00115-12. Epub 2013 Jan 31.


Catabolism of N-acetylneuraminic acid, a fitness function of the food-borne lactic acid bacterium Lactobacillus sakei, involves two newly characterized proteins.

Anba-Mondoloni J, Chaillou S, Zagorec M, Champomier-Vergès MC.

Appl Environ Microbiol. 2013 Mar;79(6):2012-8. doi: 10.1128/AEM.03301-12. Epub 2013 Jan 18.


The effect of efavirenz versus nevirapine-containing regimens on immunologic, virologic and clinical outcomes in a prospective observational study.

Cain LE, Phillips A, Lodi S, Sabin C, Bansi L, Justice A, Tate J, Logan R, Robins JM, Sterne JA, van Sighem A, de Wolf F, Bucher HC, Elzi L, Touloumi G, Vourli G, Esteve A, Casabona J, del Amo J, Moreno S, Seng R, Meyer L, Pérez-Hoyos S, Muga R, Abgrall S, Costagliola D, Hernán MA; HIV-CAUSAL Collaboration.

AIDS. 2012 Aug 24;26(13):1691-705.


Impact of antiretroviral therapy on tuberculosis incidence among HIV-positive patients in high-income countries.

del Amo J, Moreno S, Bucher HC, Furrer H, Logan R, Sterne J, Pérez-Hoyos S, Jarrín I, Phillips A, Lodi S, van Sighem A, de Wolf W, Sabin C, Bansi L, Justice A, Goulet J, Miró JM, Ferrer E, Meyer L, Seng R, Toulomi G, Gargalianos P, Costagliola D, Abgrall S, Hernán MA; HIV-CAUSAL Collaboration.

Clin Infect Dis. 2012 May;54(9):1364-72. doi: 10.1093/cid/cis203. Epub 2012 Mar 28.


Intraspecies diversity of Lactobacillus sakei response to oxidative stress and variability of strain performance in mixed strains challenges.

Guilbaud M, Zagorec M, Chaillou S, Champomier-Vergès MC.

Food Microbiol. 2012 Apr;29(2):197-204. doi: 10.1016/ Epub 2011 Aug 12.


Fingerprint of lactic acid bacteria population in beef carpaccio is influenced by storage process and seasonal changes.

Lucquin I, Zagorec M, Champomier-Vergès M, Chaillou S.

Food Microbiol. 2012 Apr;29(2):187-96. doi: 10.1016/ Epub 2011 Aug 12.


Natural variation of Arabidopsis response to nitrogen availability.

Ikram S, Bedu M, Daniel-Vedele F, Chaillou S, Chardon F.

J Exp Bot. 2012 Jan;63(1):91-105. doi: 10.1093/jxb/err244. Epub 2011 Sep 13.


X4 tropic multi-drug resistant quasi-species detected at the time of primary HIV-1 infection remain exclusive or at least dominant far from PHI.

Ghosn J, Galimand J, Raymond S, Meyer L, Deveau C, Goujard C, Izopet J, Rouzioux C, Chaix ML; ANRS CO 06 PRIMO cohort.

PLoS One. 2011;6(8):e23301. doi: 10.1371/journal.pone.0023301. Epub 2011 Aug 24.


When to initiate combined antiretroviral therapy to reduce mortality and AIDS-defining illness in HIV-infected persons in developed countries: an observational study.

HIV-CAUSAL Collaboration, Cain LE, Logan R, Robins JM, Sterne JA, Sabin C, Bansi L, Justice A, Goulet J, van Sighem A, de Wolf F, Bucher HC, von Wyl V, Esteve A, Casabona J, del Amo J, Moreno S, Seng R, Meyer L, Perez-Hoyos S, Muga R, Lodi S, Lanoy E, Costagliola D, Hernan MA.

Ann Intern Med. 2011 Apr 19;154(8):509-15. doi: 10.7326/0003-4819-154-8-201104190-00001.


The effect of combined antiretroviral therapy on the overall mortality of HIV-infected individuals.

HIV-CAUSAL Collaboration, Ray M, Logan R, Sterne JA, Hernández-Díaz S, Robins JM, Sabin C, Bansi L, van Sighem A, de Wolf F, Costagliola D, Lanoy E, Bucher HC, von Wyl V, Esteve A, Casbona J, del Amo J, Moreno S, Justice A, Goulet J, Lodi S, Phillips A, Seng R, Meyer L, Pérez-Hoyos S, García de Olalla P, Hernán MA.

AIDS. 2010 Jan 2;24(1):123-37. doi: 10.1097/QAD.0b013e3283324283.


Behavior of the meat-borne bacterium Lactobacillus sakei during its transit through the gastrointestinal tracts of axenic and conventional mice.

Chiaramonte F, Blugeon S, Chaillou S, Langella P, Zagorec M.

Appl Environ Microbiol. 2009 Jul;75(13):4498-505. doi: 10.1128/AEM.02868-08. Epub 2009 May 15.


Stable frequency of HIV-1 transmitted drug resistance in patients at the time of primary infection over 1996-2006 in France.

Chaix ML, Descamps D, Wirden M, Bocket L, Delaugerre C, Tamalet C, Schneider V, Izopet J, Masquelier B, Rouzioux C, Meyer L, Costagliola D; ANRS AC11 Resistance Group; Cohort PRIMO ANRS CO 6; FHDH ANRS CO4 Study Groups.

AIDS. 2009 Mar 27;23(6):717-24. doi: 10.1097/QAD.0b013e328326ca77.


Intraspecies genomic diversity and natural population structure of the meat-borne lactic acid bacterium Lactobacillus sakei.

Chaillou S, Daty M, Baraige F, Dudez AM, Anglade P, Jones R, Alpert CA, Champomier-Vergès MC, Zagorec M.

Appl Environ Microbiol. 2009 Feb;75(4):970-80. doi: 10.1128/AEM.01721-08. Epub 2008 Dec 29.


Plant response to nitrate starvation is determined by N storage capacity matched by nitrate uptake capacity in two Arabidopsis genotypes.

Richard-Molard C, Krapp A, Brun F, Ney B, Daniel-Vedele F, Chaillou S.

J Exp Bot. 2008;59(4):779-91. doi: 10.1093/jxb/erm363. Epub 2008 Feb 27.

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