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Results: 1 to 20 of 25

1.

Practical analysis of specificity-determining residues in protein families.

Chagoyen M, García-Martín JA, Pazos F.

Brief Bioinform. 2015 Jul 2. pii: bbv045. [Epub ahead of print]

PMID:
26141829
2.

Strigolactone promotes degradation of DWARF14, an α/β hydrolase essential for strigolactone signaling in Arabidopsis.

Chevalier F, Nieminen K, Sánchez-Ferrero JC, Rodríguez ML, Chagoyen M, Hardtke CS, Cubas P.

Plant Cell. 2014 Mar;26(3):1134-50. doi: 10.1105/tpc.114.122903. Epub 2014 Mar 7.

3.

Functional signature for the recognition of specific target mRNAs by human Staufen1 protein.

de Lucas S, Oliveros JC, Chagoyen M, Ortín J.

Nucleic Acids Res. 2014 Apr;42(7):4516-26. doi: 10.1093/nar/gku073. Epub 2014 Jan 26.

4.

Molecular determinants of the ATP hydrolysis asymmetry of the CCT chaperonin complex.

Chagoyen M, Carrascosa JL, Pazos F, Valpuesta JM.

Proteins. 2014 May;82(5):703-7. doi: 10.1002/prot.24510. Epub 2014 Feb 12.

PMID:
24420718
5.

Structural characterization of the bacteriophage T7 tail machinery.

Cuervo A, Pulido-Cid M, Chagoyen M, Arranz R, González-García VA, Garcia-Doval C, Castón JR, Valpuesta JM, van Raaij MJ, Martín-Benito J, Carrascosa JL.

J Biol Chem. 2013 Sep 6;288(36):26290-9. doi: 10.1074/jbc.M113.491209. Epub 2013 Jul 24.

6.

Tools for the functional interpretation of metabolomic experiments.

Chagoyen M, Pazos F.

Brief Bioinform. 2013 Nov;14(6):737-44. doi: 10.1093/bib/bbs055. Epub 2012 Oct 14.

PMID:
23063930
7.

Nuclear but not cytosolic phosphoinositide 3-kinase beta has an essential function in cell survival.

Kumar A, Redondo-Muñoz J, Perez-García V, Cortes I, Chagoyen M, Carrera AC.

Mol Cell Biol. 2011 May;31(10):2122-33. doi: 10.1128/MCB.01313-10. Epub 2011 Mar 7.

8.

MBRole: enrichment analysis of metabolomic data.

Chagoyen M, Pazos F.

Bioinformatics. 2011 Mar 1;27(5):730-1. doi: 10.1093/bioinformatics/btr001. Epub 2011 Jan 5.

9.

Genetic polymorphisms among C57BL/6 mouse inbred strains.

Zurita E, Chagoyen M, Cantero M, Alonso R, González-Neira A, López-Jiménez A, López-Moreno JA, Landel CP, Benítez J, Pazos F, Montoliu L.

Transgenic Res. 2011 Jun;20(3):481-9. doi: 10.1007/s11248-010-9403-8. Epub 2010 May 27.

PMID:
20506040
10.

Quantifying the biological significance of gene ontology biological processes--implications for the analysis of systems-wide data.

Chagoyen M, Pazos F.

Bioinformatics. 2010 Feb 1;26(3):378-84. doi: 10.1093/bioinformatics/btp663. Epub 2009 Dec 4.

11.

SENT: semantic features in text.

Vazquez M, Carmona-Saez P, Nogales-Cadenas R, Chagoyen M, Tirado F, Carazo JM, Pascual-Montano A.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W153-9. doi: 10.1093/nar/gkp392. Epub 2009 May 20.

12.

Assessment of protein set coherence using functional annotations.

Chagoyen M, Carazo JM, Pascual-Montano A.

BMC Bioinformatics. 2008 Oct 20;9:444. doi: 10.1186/1471-2105-9-444.

13.

GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists.

Carmona-Saez P, Chagoyen M, Tirado F, Carazo JM, Pascual-Montano A.

Genome Biol. 2007;8(1):R3.

14.

bioNMF: a versatile tool for non-negative matrix factorization in biology.

Pascual-Montano A, Carmona-Saez P, Chagoyen M, Tirado F, Carazo JM, Pascual-Marqui RD.

BMC Bioinformatics. 2006 Jul 28;7:366.

15.

A literature-based similarity metric for biological processes.

Chagoyen M, Carmona-Saez P, Gil C, Carazo JM, Pascual-Montano A.

BMC Bioinformatics. 2006 Jul 26;7:363.

16.

Integrated analysis of gene expression by Association Rules Discovery.

Carmona-Saez P, Chagoyen M, Rodriguez A, Trelles O, Carazo JM, Pascual-Montano A.

BMC Bioinformatics. 2006 Feb 7;7:54.

17.

Discovering semantic features in the literature: a foundation for building functional associations.

Chagoyen M, Carmona-Saez P, Shatkay H, Carazo JM, Pascual-Montano A.

BMC Bioinformatics. 2006 Jan 26;7:41.

18.

Common conventions for interchange and archiving of three-dimensional electron microscopy information in structural biology.

Heymann JB, Chagoyen M, Belnap DM.

J Struct Biol. 2005 Aug;151(2):196-207. Erratum in: J Struct Biol. 2006 Mar;153(3):312.

PMID:
16043364
19.

Designing and executing scientific workflows with a programmable integrator.

Chagoyen M, Kurul ME, De-Alarcón PA, Carazo JM, Gupta A.

Bioinformatics. 2004 Sep 1;20(13):2092-100. Epub 2004 Apr 1.

20.

EMDep: a web-based system for the deposition and validation of high-resolution electron microscopy macromolecular structural information.

Henrick K, Newman R, Tagari M, Chagoyen M.

J Struct Biol. 2003 Oct-Nov;144(1-2):228-37.

PMID:
14643225
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