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Results: 1 to 20 of 24

1.

Strigolactone promotes degradation of DWARF14, an α/β hydrolase essential for strigolactone signaling in Arabidopsis.

Chevalier F, Nieminen K, Sánchez-Ferrero JC, Rodríguez ML, Chagoyen M, Hardtke CS, Cubas P.

Plant Cell. 2014 Mar;26(3):1134-50. doi: 10.1105/tpc.114.122903. Epub 2014 Mar 7.

PMID:
24610723
[PubMed - in process]
2.

Functional signature for the recognition of specific target mRNAs by human Staufen1 protein.

de Lucas S, Oliveros JC, Chagoyen M, Ortín J.

Nucleic Acids Res. 2014 Apr;42(7):4516-26. doi: 10.1093/nar/gku073. Epub 2014 Jan 26.

PMID:
24470147
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Molecular determinants of the ATP hydrolysis asymmetry of the CCT chaperonin complex.

Chagoyen M, Carrascosa JL, Pazos F, Valpuesta JM.

Proteins. 2014 May;82(5):703-7. doi: 10.1002/prot.24510. Epub 2014 Feb 12.

PMID:
24420718
[PubMed - in process]
4.

Structural characterization of the bacteriophage T7 tail machinery.

Cuervo A, Pulido-Cid M, Chagoyen M, Arranz R, González-García VA, Garcia-Doval C, Castón JR, Valpuesta JM, van Raaij MJ, Martín-Benito J, Carrascosa JL.

J Biol Chem. 2013 Sep 6;288(36):26290-9. doi: 10.1074/jbc.M113.491209. Epub 2013 Jul 24.

PMID:
23884409
[PubMed - indexed for MEDLINE]
5.

Tools for the functional interpretation of metabolomic experiments.

Chagoyen M, Pazos F.

Brief Bioinform. 2013 Nov;14(6):737-44. doi: 10.1093/bib/bbs055. Epub 2012 Oct 14.

PMID:
23063930
[PubMed - indexed for MEDLINE]
6.

Nuclear but not cytosolic phosphoinositide 3-kinase beta has an essential function in cell survival.

Kumar A, Redondo-Muñoz J, Perez-García V, Cortes I, Chagoyen M, Carrera AC.

Mol Cell Biol. 2011 May;31(10):2122-33. doi: 10.1128/MCB.01313-10. Epub 2011 Mar 7.

PMID:
21383062
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

MBRole: enrichment analysis of metabolomic data.

Chagoyen M, Pazos F.

Bioinformatics. 2011 Mar 1;27(5):730-1. doi: 10.1093/bioinformatics/btr001. Epub 2011 Jan 5.

PMID:
21208985
[PubMed - indexed for MEDLINE]
Free Article
8.

Genetic polymorphisms among C57BL/6 mouse inbred strains.

Zurita E, Chagoyen M, Cantero M, Alonso R, González-Neira A, López-Jiménez A, López-Moreno JA, Landel CP, Benítez J, Pazos F, Montoliu L.

Transgenic Res. 2011 Jun;20(3):481-9. doi: 10.1007/s11248-010-9403-8. Epub 2010 May 27.

PMID:
20506040
[PubMed - indexed for MEDLINE]
9.

Quantifying the biological significance of gene ontology biological processes--implications for the analysis of systems-wide data.

Chagoyen M, Pazos F.

Bioinformatics. 2010 Feb 1;26(3):378-84. doi: 10.1093/bioinformatics/btp663. Epub 2009 Dec 4.

PMID:
19965879
[PubMed - indexed for MEDLINE]
Free Article
10.

SENT: semantic features in text.

Vazquez M, Carmona-Saez P, Nogales-Cadenas R, Chagoyen M, Tirado F, Carazo JM, Pascual-Montano A.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W153-9. doi: 10.1093/nar/gkp392. Epub 2009 May 20.

PMID:
19458159
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Assessment of protein set coherence using functional annotations.

Chagoyen M, Carazo JM, Pascual-Montano A.

BMC Bioinformatics. 2008 Oct 20;9:444. doi: 10.1186/1471-2105-9-444.

PMID:
18937846
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists.

Carmona-Saez P, Chagoyen M, Tirado F, Carazo JM, Pascual-Montano A.

Genome Biol. 2007;8(1):R3.

PMID:
17204154
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

bioNMF: a versatile tool for non-negative matrix factorization in biology.

Pascual-Montano A, Carmona-Saez P, Chagoyen M, Tirado F, Carazo JM, Pascual-Marqui RD.

BMC Bioinformatics. 2006 Jul 28;7:366.

PMID:
16875499
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A literature-based similarity metric for biological processes.

Chagoyen M, Carmona-Saez P, Gil C, Carazo JM, Pascual-Montano A.

BMC Bioinformatics. 2006 Jul 26;7:363.

PMID:
16872502
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Integrated analysis of gene expression by Association Rules Discovery.

Carmona-Saez P, Chagoyen M, Rodriguez A, Trelles O, Carazo JM, Pascual-Montano A.

BMC Bioinformatics. 2006 Feb 7;7:54.

PMID:
16464256
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Discovering semantic features in the literature: a foundation for building functional associations.

Chagoyen M, Carmona-Saez P, Shatkay H, Carazo JM, Pascual-Montano A.

BMC Bioinformatics. 2006 Jan 26;7:41.

PMID:
16438716
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Common conventions for interchange and archiving of three-dimensional electron microscopy information in structural biology.

Heymann JB, Chagoyen M, Belnap DM.

J Struct Biol. 2005 Aug;151(2):196-207. Erratum in: J Struct Biol. 2006 Mar;153(3):312.

PMID:
16043364
[PubMed - indexed for MEDLINE]
18.

Designing and executing scientific workflows with a programmable integrator.

Chagoyen M, Kurul ME, De-Alarcón PA, Carazo JM, Gupta A.

Bioinformatics. 2004 Sep 1;20(13):2092-100. Epub 2004 Apr 1.

PMID:
15059834
[PubMed - indexed for MEDLINE]
Free Article
19.

EMDep: a web-based system for the deposition and validation of high-resolution electron microscopy macromolecular structural information.

Henrick K, Newman R, Tagari M, Chagoyen M.

J Struct Biol. 2003 Oct-Nov;144(1-2):228-37.

PMID:
14643225
[PubMed - indexed for MEDLINE]
20.

FEMME database: topologic and geometric information of macromolecules.

Jiménez-Lozano N, Chagoyen M, Cuenca-Alba J, Carazo JM.

J Struct Biol. 2003 Oct-Nov;144(1-2):104-13.

PMID:
14643213
[PubMed - indexed for MEDLINE]

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