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Analysis of transcripts differentially expressed between fruited and deflowered 'Gala' adult trees: a contribution to biennial bearing understanding in apple.

Guitton B, Kelner JJ, Celton JM, Sabau X, Renou JP, Chagné D, Costes E.

BMC Plant Biol. 2016 Feb 29;16:55. doi: 10.1186/s12870-016-0739-y.


Genome mapping of postzygotic hybrid necrosis in an interspecific pear population.

Montanari S, Brewer L, Lamberts R, Velasco R, Malnoy M, Perchepied L, Guérif P, Durel CE, Bus VG, Gardiner SE, Chagné D.

Hortic Res. 2016 Jan 6;3:15064. doi: 10.1038/hortres.2015.64. eCollection 2016.


Two quantitative trait loci, Dw1 and Dw2, are primarily responsible for rootstock-induced dwarfing in apple.

Foster TM, Celton JM, Chagné D, Tustin DS, Gardiner SE.

Hortic Res. 2015 Feb 11;2:15001. doi: 10.1038/hortres.2015.1. eCollection 2015.


Genome-Enabled Estimates of Additive and Nonadditive Genetic Variances and Prediction of Apple Phenotypes Across Environments.

Kumar S, Molloy C, Muñoz P, Daetwyler H, Chagné D, Volz R.

G3 (Bethesda). 2015 Oct 23;5(12):2711-8. doi: 10.1534/g3.115.021105.


The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh.

Boocock J, Chagné D, Merriman TR, Black MA.

BMC Genomics. 2015 Oct 23;16:848. doi: 10.1186/s12864-015-2096-x.


Genetic control of pear rootstock-induced dwarfing and precocity is linked to a chromosomal region syntenic to the apple Dw1 loci.

Knäbel M, Friend AP, Palmer JW, Diack R, Wiedow C, Alspach P, Deng C, Gardiner SE, Tustin DS, Schaffer R, Foster T, Chagné D.

BMC Plant Biol. 2015 Sep 22;15:230. doi: 10.1186/s12870-015-0620-4.


A microRNA allele that emerged prior to apple domestication may underlie fruit size evolution.

Yao JL, Xu J, Cornille A, Tomes S, Karunairetnam S, Luo Z, Bassett H, Whitworth C, Rees-George J, Ranatunga C, Snirc A, Crowhurst R, de Silva N, Warren B, Deng C, Kumar S, Chagné D, Bus VG, Volz RK, Rikkerink EH, Gardiner SE, Giraud T, MacDiarmid R, Gleave AP.

Plant J. 2015 Oct;84(2):417-27. doi: 10.1111/tpj.13021.


Staying green postharvest: how three mutations in the Arabidopsis chlorophyll b reductase gene NYC1 delay degreening by distinct mechanisms.

Jibran R, Sullivan KL, Crowhurst R, Erridge ZA, Chagné D, McLachlan AR, Brummell DA, Dijkwel PP, Hunter DA.

J Exp Bot. 2015 Nov;66(21):6849-62. doi: 10.1093/jxb/erv390. Epub 2015 Aug 10.


The O-methyltransferase gene MdoOMT1 is required for biosynthesis of methylated phenylpropenes in ripe apple fruit.

Yauk YK, Chagné D, Tomes S, Matich AJ, Wang MY, Chen X, Maddumage R, Hunt MB, Rowan DD, Atkinson RG.

Plant J. 2015 Jun;82(6):937-50. doi: 10.1111/tpj.12861. Epub 2015 May 20.


Scab resistance in 'Geneva' apple is conditioned by a resistance gene cluster with complex genetic control.

Bastiaanse H, Bassett HC, Kirk C, Gardiner SE, Deng C, Groenworld R, Chagné D, Bus VG.

Mol Plant Pathol. 2016 Feb;17(2):159-72. doi: 10.1111/mpp.12269. Epub 2015 Jun 7.


Methods for the design, implementation, and analysis of illumina infinium™ SNP assays in plants.

Chagné D, Bianco L, Lawley C, Micheletti D, Jacobs JM.

Methods Mol Biol. 2015;1245:281-98. doi: 10.1007/978-1-4939-1966-6_21.


Application of the high-resolution melting technique for gene mapping and SNP detection in plants.

Chagné D.

Methods Mol Biol. 2015;1245:151-9. doi: 10.1007/978-1-4939-1966-6_11.


Development and validation of a 20K single nucleotide polymorphism (SNP) whole genome genotyping array for apple (Malus × domestica Borkh).

Bianco L, Cestaro A, Sargent DJ, Banchi E, Derdak S, Di Guardo M, Salvi S, Jansen J, Viola R, Gut I, Laurens F, Chagné D, Velasco R, van de Weg E, Troggio M.

PLoS One. 2014 Oct 10;9(10):e110377. doi: 10.1371/journal.pone.0110377. eCollection 2014.


Genetic, metabolite and developmental determinism of fruit friction discolouration in pear.

Saeed M, Brewer L, Johnston J, McGhie TK, Gardiner SE, Heyes JA, Chagné D.

BMC Plant Biol. 2014 Sep 16;14:241. doi: 10.1186/s12870-014-0241-3.


The draft genome sequence of European pear (Pyrus communis L. 'Bartlett').

Chagné D, Crowhurst RN, Pindo M, Thrimawithana A, Deng C, Ireland H, Fiers M, Dzierzon H, Cestaro A, Fontana P, Bianco L, Lu A, Storey R, Knäbel M, Saeed M, Montanari S, Kim YK, Nicolini D, Larger S, Stefani E, Allan AC, Bowen J, Harvey I, Johnston J, Malnoy M, Troggio M, Perchepied L, Sawyer G, Wiedow C, Won K, Viola R, Hellens RP, Brewer L, Bus VG, Schaffer RJ, Gardiner SE, Velasco R.

PLoS One. 2014 Apr 3;9(4):e92644. doi: 10.1371/journal.pone.0092644. eCollection 2014.


The AAT1 locus is critical for the biosynthesis of esters contributing to 'ripe apple' flavour in 'Royal Gala' and 'Granny Smith' apples.

Souleyre EJ, Chagné D, Chen X, Tomes S, Turner RM, Wang MY, Maddumage R, Hunt MB, Winz RA, Wiedow C, Hamiaux C, Gardiner SE, Rowan DD, Atkinson RG.

Plant J. 2014 Jun;78(6):903-15. doi: 10.1111/tpj.12518. Epub 2014 May 23.


Genetic and environmental control of fruit maturation, dry matter and firmness in apple (Malus × domestica Borkh.).

Chagné D, Dayatilake D, Diack R, Oliver M, Ireland H, Watson A, Gardiner SE, Johnston JW, Schaffer RJ, Tustin S.

Hortic Res. 2014 Sep 17;1:14046. doi: 10.1038/hortres.2014.46. eCollection 2014.


Identification of Pyrus single nucleotide polymorphisms (SNPs) and evaluation for genetic mapping in European pear and interspecific Pyrus hybrids.

Montanari S, Saeed M, Knäbel M, Kim Y, Troggio M, Malnoy M, Velasco R, Fontana P, Won K, Durel CE, Perchepied L, Schaffer R, Wiedow C, Bus V, Brewer L, Gardiner SE, Crowhurst RN, Chagné D.

PLoS One. 2013 Oct 14;8(10):e77022. doi: 10.1371/journal.pone.0077022. eCollection 2013.


Novel genomic approaches unravel genetic architecture of complex traits in apple.

Kumar S, Garrick DJ, Bink MC, Whitworth C, Chagné D, Volz RK.

BMC Genomics. 2013 Jun 12;14:393. doi: 10.1186/1471-2164-14-393.


QTL involved in the modification of cyanidin compounds in black and red raspberry fruit.

Bushakra JM, Krieger C, Deng D, Stephens MJ, Allan AC, Storey R, Symonds VV, Stevenson D, McGhie T, Chagné D, Buck EJ, Gardiner SE.

Theor Appl Genet. 2013 Mar;126(3):847-65. doi: 10.1007/s00122-012-2022-4. Epub 2012 Dec 9.

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