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Results: 1 to 20 of 29

1.

The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations.

Cerqueira GC, Arnaud MB, Inglis DO, Skrzypek MS, Binkley G, Simison M, Miyasato SR, Binkley J, Orvis J, Shah P, Wymore F, Sherlock G, Wortman JR.

Nucleic Acids Res. 2014 Jan;42(Database issue):D705-10. doi: 10.1093/nar/gkt1029. Epub 2013 Nov 4.

PMID:
24194595
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A directed approach for the identification of transcripts harbouring the spliced leader sequence and the effect of trans-splicing knockdown in Schistosoma mansoni.

Mourão Mde M, Bitar M, Lobo FP, Peconick AP, Grynberg P, Prosdocimi F, Waisberg M, Cerqueira GC, Macedo AM, Machado CR, Yoshino T, Franco GR.

Mem Inst Oswaldo Cruz. 2013 Sep;108(6):707-17. doi: 10.1590/0074-0276108062013006.

PMID:
24037192
[PubMed - in process]
Free PMC Article
3.

The genome of Anopheles darlingi, the main neotropical malaria vector.

Marinotti O, Cerqueira GC, de Almeida LG, Ferro MI, Loreto EL, Zaha A, Teixeira SM, Wespiser AR, Almeida E Silva A, Schlindwein AD, Pacheco AC, Silva AL, Graveley BR, Walenz BP, Lima Bde A, Ribeiro CA, Nunes-Silva CG, de Carvalho CR, Soares CM, de Menezes CB, Matiolli C, Caffrey D, Araújo DA, de Oliveira DM, Golenbock D, Grisard EC, Fantinatti-Garboggini F, de Carvalho FM, Barcellos FG, Prosdocimi F, May G, Azevedo Junior GM, Guimarães GM, Goldman GH, Padilha IQ, Batista Jda S, Ferro JA, Ribeiro JM, Fietto JL, Dabbas KM, Cerdeira L, Agnez-Lima LF, Brocchi M, de Carvalho MO, Teixeira Mde M, Diniz Maia Mde M, Goldman MH, Cruz Schneider MP, Felipe MS, Hungria M, Nicolás MF, Pereira M, Montes MA, Cantão ME, Vincentz M, Rafael MS, Silverman N, Stoco PH, Souza RC, Vicentini R, Gazzinelli RT, Neves Rde O, Silva R, Astolfi-Filho S, Maciel TE, Urményi TP, Tadei WP, Camargo EP, de Vasconcelos AT.

Nucleic Acids Res. 2013 Aug;41(15):7387-400. doi: 10.1093/nar/gkt484. Epub 2013 Jun 12.

PMID:
23761445
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Comprehensive annotation of secondary metabolite biosynthetic genes and gene clusters of Aspergillus nidulans, A. fumigatus, A. niger and A. oryzae.

Inglis DO, Binkley J, Skrzypek MS, Arnaud MB, Cerqueira GC, Shah P, Wymore F, Wortman JR, Sherlock G.

BMC Microbiol. 2013 Apr 26;13:91. doi: 10.1186/1471-2180-13-91.

PMID:
23617571
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Genomics of Loa loa, a Wolbachia-free filarial parasite of humans.

Desjardins CA, Cerqueira GC, Goldberg JM, Dunning Hotopp JC, Haas BJ, Zucker J, Ribeiro JM, Saif S, Levin JZ, Fan L, Zeng Q, Russ C, Wortman JR, Fink DL, Birren BW, Nutman TB.

Nat Genet. 2013 May;45(5):495-500. doi: 10.1038/ng.2585. Epub 2013 Mar 24.

PMID:
23525074
[PubMed - indexed for MEDLINE]
6.

Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia.

Takala-Harrison S, Clark TG, Jacob CG, Cummings MP, Miotto O, Dondorp AM, Fukuda MM, Nosten F, Noedl H, Imwong M, Bethell D, Se Y, Lon C, Tyner SD, Saunders DL, Socheat D, Ariey F, Phyo AP, Starzengruber P, Fuehrer HP, Swoboda P, Stepniewska K, Flegg J, Arze C, Cerqueira GC, Silva JC, Ricklefs SM, Porcella SF, Stephens RM, Adams M, Kenefic LJ, Campino S, Auburn S, MacInnis B, Kwiatkowski DP, Su XZ, White NJ, Ringwald P, Plowe CV.

Proc Natl Acad Sci U S A. 2013 Jan 2;110(1):240-5. doi: 10.1073/pnas.1211205110. Epub 2012 Dec 17.

PMID:
23248304
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Transcript expression analysis of putative Trypanosoma brucei GPI-anchored surface proteins during development in the tsetse and mammalian hosts.

Savage AF, Cerqueira GC, Regmi S, Wu Y, El Sayed NM, Aksoy S.

PLoS Negl Trop Dis. 2012;6(6):e1708. doi: 10.1371/journal.pntd.0001708. Epub 2012 Jun 19.

PMID:
22724039
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

DIVERGENOME: a bioinformatics platform to assist population genetics and genetic epidemiology studies.

Magalhães WC, Rodrigues MR, Silva D, Soares-Souza G, Iannini ML, Cerqueira GC, Faria-Campos AC, Tarazona-Santos E.

Genet Epidemiol. 2012 May;36(4):360-7. doi: 10.1002/gepi.21629. Epub 2012 Apr 16.

PMID:
22508222
[PubMed - indexed for MEDLINE]
9.

Plasmodium falciparum merozoite surface protein 1 blocks the proinflammatory protein S100P.

Waisberg M, Cerqueira GC, Yager SB, Francischetti IM, Lu J, Gera N, Srinivasan P, Miura K, Rada B, Lukszo J, Barbian KD, Leto TL, Porcella SF, Narum DL, El-Sayed N, Miller LH, Pierce SK.

Proc Natl Acad Sci U S A. 2012 Apr 3;109(14):5429-34. doi: 10.1073/pnas.1202689109. Epub 2012 Mar 19.

PMID:
22431641
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011.

Grad YH, Lipsitch M, Feldgarden M, Arachchi HM, Cerqueira GC, Fitzgerald M, Godfrey P, Haas BJ, Murphy CI, Russ C, Sykes S, Walker BJ, Wortman JR, Young S, Zeng Q, Abouelleil A, Bochicchio J, Chauvin S, Desmet T, Gujja S, McCowan C, Montmayeur A, Steelman S, Frimodt-Møller J, Petersen AM, Struve C, Krogfelt KA, Bingen E, Weill FX, Lander ES, Nusbaum C, Birren BW, Hung DT, Hanage WP.

Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):3065-70. doi: 10.1073/pnas.1121491109. Epub 2012 Feb 6. Erratum in: Proc Natl Acad Sci U S A. 2012 Apr 3;109(14):5547.

PMID:
22315421
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.

Arnaud MB, Cerqueira GC, Inglis DO, Skrzypek MS, Binkley J, Chibucos MC, Crabtree J, Howarth C, Orvis J, Shah P, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G, Wortman JR.

Nucleic Acids Res. 2012 Jan;40(Database issue):D653-9. doi: 10.1093/nar/gkr875. Epub 2011 Nov 12.

PMID:
22080559
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

New resources for functional analysis of omics data for the genus Aspergillus.

Nitsche BM, Crabtree J, Cerqueira GC, Meyer V, Ram AF, Wortman JR.

BMC Genomics. 2011 Oct 5;12:486. doi: 10.1186/1471-2164-12-486.

PMID:
21974739
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Identification of Schistosoma mansoni microRNAs.

Simões MC, Lee J, Djikeng A, Cerqueira GC, Zerlotini A, da Silva-Pereira RA, Dalby AR, LoVerde P, El-Sayed NM, Oliveira G.

BMC Genomics. 2011 Jan 19;12:47. doi: 10.1186/1471-2164-12-47.

PMID:
21247453
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genome-wide analysis reveals novel genes essential for heme homeostasis in Caenorhabditis elegans.

Severance S, Rajagopal A, Rao AU, Cerqueira GC, Mitreva M, El-Sayed NM, Krause M, Hamza I.

PLoS Genet. 2010 Jul 29;6(7):e1001044. doi: 10.1371/journal.pgen.1001044.

PMID:
20686661
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The genome of the blood fluke Schistosoma mansoni.

Berriman M, Haas BJ, LoVerde PT, Wilson RA, Dillon GP, Cerqueira GC, Mashiyama ST, Al-Lazikani B, Andrade LF, Ashton PD, Aslett MA, Bartholomeu DC, Blandin G, Caffrey CR, Coghlan A, Coulson R, Day TA, Delcher A, DeMarco R, Djikeng A, Eyre T, Gamble JA, Ghedin E, Gu Y, Hertz-Fowler C, Hirai H, Hirai Y, Houston R, Ivens A, Johnston DA, Lacerda D, Macedo CD, McVeigh P, Ning Z, Oliveira G, Overington JP, Parkhill J, Pertea M, Pierce RJ, Protasio AV, Quail MA, Rajandream MA, Rogers J, Sajid M, Salzberg SL, Stanke M, Tivey AR, White O, Williams DL, Wortman J, Wu W, Zamanian M, Zerlotini A, Fraser-Liggett CM, Barrell BG, El-Sayed NM.

Nature. 2009 Jul 16;460(7253):352-8. doi: 10.1038/nature08160.

PMID:
19606141
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Genomic organization and expression profile of the mucin-associated surface protein (masp) family of the human pathogen Trypanosoma cruzi.

Bartholomeu DC, Cerqueira GC, Leão AC, daRocha WD, Pais FS, Macedo C, Djikeng A, Teixeira SM, El-Sayed NM.

Nucleic Acids Res. 2009 Jun;37(10):3407-17. doi: 10.1093/nar/gkp172. Epub 2009 Mar 31.

PMID:
19336417
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Schistosoma mansoni: Microarray analysis of gene expression induced by host sex.

Waisberg M, Lobo FP, Cerqueira GC, Passos LK, Carvalho OS, El-Sayed NM, Franco GR.

Exp Parasitol. 2008 Dec;120(4):357-63. doi: 10.1016/j.exppara.2008.09.005. Epub 2008 Sep 12.

PMID:
18822286
[PubMed - indexed for MEDLINE]
18.

Sequences involved in mRNA processing in Trypanosoma cruzi.

Campos PC, Bartholomeu DC, DaRocha WD, Cerqueira GC, Teixeira SM.

Int J Parasitol. 2008 Oct;38(12):1383-9. doi: 10.1016/j.ijpara.2008.07.001. Epub 2008 Jul 24.

PMID:
18700146
[PubMed - indexed for MEDLINE]
19.

Genomic organization and transcription analysis of the 195-bp satellite DNA in Trypanosoma cruzi.

Martins C, Baptista CS, Ienne S, Cerqueira GC, Bartholomeu DC, Zingales B.

Mol Biochem Parasitol. 2008 Jul;160(1):60-4. doi: 10.1016/j.molbiopara.2008.03.004. Epub 2008 Mar 20.

PMID:
18440654
[PubMed - indexed for MEDLINE]
20.

Sequence diversity and evolution of multigene families in Trypanosoma cruzi.

Cerqueira GC, Bartholomeu DC, DaRocha WD, Hou L, Freitas-Silva DM, Machado CR, El-Sayed NM, Teixeira SM.

Mol Biochem Parasitol. 2008 Jan;157(1):65-72. Epub 2007 Oct 6.

PMID:
18023889
[PubMed - indexed for MEDLINE]

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