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Items: 14

1.

Identification of significantly mutated regions across cancer types highlights a rich landscape of functional molecular alterations.

Araya CL, Cenik C, Reuter JA, Kiss G, Pande VS, Snyder MP, Greenleaf WJ.

Nat Genet. 2016 Feb;48(2):117-25. doi: 10.1038/ng.3471. Epub 2015 Dec 21.

PMID:
26691984
2.

Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans.

Cenik C, Cenik ES, Byeon GW, Grubert F, Candille SI, Spacek D, Alsallakh B, Tilgner H, Araya CL, Tang H, Ricci E, Snyder MP.

Genome Res. 2015 Nov;25(11):1610-21. doi: 10.1101/gr.193342.115. Epub 2015 Aug 21.

3.

An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments.

Heyer EE, Ozadam H, Ricci EP, Cenik C, Moore MJ.

Nucleic Acids Res. 2015 Jan;43(1):e2. doi: 10.1093/nar/gku1235. Epub 2014 Dec 12.

4.

Staufen1 senses overall transcript secondary structure to regulate translation.

Ricci EP, Kucukural A, Cenik C, Mercier BC, Singh G, Heyer EE, Ashar-Patel A, Peng L, Moore MJ.

Nat Struct Mol Biol. 2014 Jan;21(1):26-35. doi: 10.1038/nsmb.2739. Epub 2013 Dec 15.

5.

ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq.

Kucukural A, Özadam H, Singh G, Moore MJ, Cenik C.

Bioinformatics. 2013 Oct 1;29(19):2485-6. doi: 10.1093/bioinformatics/btt428. Epub 2013 Aug 8.

6.

RanBP2/Nup358 potentiates the translation of a subset of mRNAs encoding secretory proteins.

Mahadevan K, Zhang H, Akef A, Cui XA, Gueroussov S, Cenik C, Roth FP, Palazzo AF.

PLoS Biol. 2013;11(4):e1001545. doi: 10.1371/journal.pbio.1001545. Epub 2013 Apr 23.

7.

Introns in UTRs: why we should stop ignoring them.

Bicknell AA, Cenik C, Chua HN, Roth FP, Moore MJ.

Bioessays. 2012 Dec;34(12):1025-34. doi: 10.1002/bies.201200073. Epub 2012 Oct 26.

PMID:
23108796
8.

The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus.

Singh G, Kucukural A, Cenik C, Leszyk JD, Shaffer SA, Weng Z, Moore MJ.

Cell. 2012 Nov 9;151(4):750-64. doi: 10.1016/j.cell.2012.10.007. Epub 2012 Oct 18. Erratum in: Cell. 2012 Nov 9;151(4):915-6.

9.

Genome analysis reveals interplay between 5'UTR introns and nuclear mRNA export for secretory and mitochondrial genes.

Cenik C, Chua HN, Zhang H, Tarnawsky SP, Akef A, Derti A, Tasan M, Moore MJ, Palazzo AF, Roth FP.

PLoS Genet. 2011 Apr;7(4):e1001366. doi: 10.1371/journal.pgen.1001366. Epub 2011 Apr 14.

10.

Identification of neuronal RNA targets of TDP-43-containing ribonucleoprotein complexes.

Sephton CF, Cenik C, Kucukural A, Dammer EB, Cenik B, Han Y, Dewey CM, Roth FP, Herz J, Peng J, Moore MJ, Yu G.

J Biol Chem. 2011 Jan 14;286(2):1204-15. doi: 10.1074/jbc.M110.190884. Epub 2010 Nov 4.

11.

Pacific salmon and the coalescent effective population size.

Cenik C, Wakeley J.

PLoS One. 2010 Sep 27;5(9):e13019. doi: 10.1371/journal.pone.0013019.

12.

Absence of evidence for MHC-dependent mate selection within HapMap populations.

Derti A, Cenik C, Kraft P, Roth FP.

PLoS Genet. 2010 Apr 29;6(4):e1000925. doi: 10.1371/journal.pgen.1000925.

13.

Genome-wide functional analysis of human 5' untranslated region introns.

Cenik C, Derti A, Mellor JC, Berriz GF, Roth FP.

Genome Biol. 2010;11(3):R29. doi: 10.1186/gb-2010-11-3-r29. Epub 2010 Mar 11.

14.

Next generation software for functional trend analysis.

Berriz GF, Beaver JE, Cenik C, Tasan M, Roth FP.

Bioinformatics. 2009 Nov 15;25(22):3043-4. doi: 10.1093/bioinformatics/btp498. Epub 2009 Aug 28.

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