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Results: 1 to 20 of 24

1.

Harnessing natural sequence variation to dissect posttranscriptional regulatory networks in yeast.

Fazlollahi M, Lee E, Muroff I, Lu XJ, Gomez-Alcala P, Causton HC, Bussemaker HJ.

G3 (Bethesda). 2014 Jun 17;4(8):1539-53. doi: 10.1534/g3.114.012039.

PMID:
24938291
[PubMed - in process]
Free PMC Article
2.

Exploring the use of internal and externalcontrols for assessing microarray technical performance.

Lippa KA, Duewer DL, Salit ML, Game L, Causton HC.

BMC Res Notes. 2010 Dec 28;3:349. doi: 10.1186/1756-0500-3-349.

PMID:
21189145
[PubMed]
Free PMC Article
3.

An integrated approach to uncover drivers of cancer.

Akavia UD, Litvin O, Kim J, Sanchez-Garcia F, Kotliar D, Causton HC, Pochanard P, Mozes E, Garraway LA, Pe'er D.

Cell. 2010 Dec 10;143(6):1005-17. doi: 10.1016/j.cell.2010.11.013. Epub 2010 Dec 2.

PMID:
21129771
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Harnessing gene expression to identify the genetic basis of drug resistance.

Chen BJ, Causton HC, Mancenido D, Goddard NL, Perlstein EO, Pe'er D.

Mol Syst Biol. 2009;5:310. doi: 10.1038/msb.2009.69. Epub 2009 Oct 13.

PMID:
19888205
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Modularity and interactions in the genetics of gene expression.

Litvin O, Causton HC, Chen BJ, Pe'er D.

Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6441-6. doi: 10.1073/pnas.0810208106. Epub 2009 Feb 17.

PMID:
19223586
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE).

Deutsch EW, Ball CA, Berman JJ, Bova GS, Brazma A, Bumgarner RE, Campbell D, Causton HC, Christiansen JH, Daian F, Dauga D, Davidson DR, Gimenez G, Goo YA, Grimmond S, Henrich T, Herrmann BG, Johnson MH, Korb M, Mills JC, Oudes AJ, Parkinson HE, Pascal LE, Pollet N, Quackenbush J, Ramialison M, Ringwald M, Salgado D, Sansone SA, Sherlock G, Stoeckert CJ Jr, Swedlow J, Taylor RC, Walashek L, Warford A, Wilkinson DG, Zhou Y, Zon LI, Liu AY, True LD.

Nat Biotechnol. 2008 Mar;26(3):305-12. doi: 10.1038/nbt1391.

PMID:
18327244
[PubMed - indexed for MEDLINE]
7.

A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.

Rayner TF, Rocca-Serra P, Spellman PT, Causton HC, Farne A, Holloway E, Irizarry RA, Liu J, Maier DS, Miller M, Petersen K, Quackenbush J, Sherlock G, Stoeckert CJ Jr, White J, Whetzel PL, Wymore F, Parkinson H, Sarkans U, Ball CA, Brazma A.

BMC Bioinformatics. 2006 Nov 6;7:489.

PMID:
17087822
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Development of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE).

Deutsch EW, Ball CA, Bova GS, Brazma A, Bumgarner RE, Campbell D, Causton HC, Christiansen J, Davidson D, Eichner LJ, Goo YA, Grimmond S, Henrich T, Johnson MH, Korb M, Mills JC, Oudes A, Parkinson HE, Pascal LE, Quackenbush J, Ramialison M, Ringwald M, Sansone SA, Sherlock G, Stoeckert CJ Jr, Swedlow J, Taylor RC, Walashek L, Zhou Y, Liu AY, True LD.

OMICS. 2006 Summer;10(2):205-8. Review.

PMID:
16901227
[PubMed - indexed for MEDLINE]
9.

Development of FuGO: an ontology for functional genomics investigations.

Whetzel PL, Brinkman RR, Causton HC, Fan L, Field D, Fostel J, Fragoso G, Gray T, Heiskanen M, Hernandez-Boussard T, Morrison N, Parkinson H, Rocca-Serra P, Sansone SA, Schober D, Smith B, Stevens R, Stoeckert CJ Jr, Taylor C, White J, Wood A; FuGO Working Group.

OMICS. 2006 Summer;10(2):199-204. Review.

PMID:
16901226
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The MGED Ontology: a resource for semantics-based description of microarray experiments.

Whetzel PL, Parkinson H, Causton HC, Fan L, Fostel J, Fragoso G, Game L, Heiskanen M, Morrison N, Rocca-Serra P, Sansone SA, Taylor C, White J, Stoeckert CJ Jr.

Bioinformatics. 2006 Apr 1;22(7):866-73. Epub 2006 Jan 21.

PMID:
16428806
[PubMed - indexed for MEDLINE]
Free Article
11.

MiMiR: a comprehensive solution for storage, annotation and exchange of microarray data.

Navarange M, Game L, Fowler D, Wadekar V, Banks H, Cooley N, Rahman F, Hinshelwood J, Broderick P, Causton HC.

BMC Bioinformatics. 2005 Nov 9;6:268.

PMID:
16280078
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

BGX: a fully Bayesian integrated approach to the analysis of Affymetrix GeneChip data.

Hein AM, Richardson S, Causton HC, Ambler GK, Green PJ.

Biostatistics. 2005 Jul;6(3):349-73. Epub 2005 Apr 14.

PMID:
15831583
[PubMed - indexed for MEDLINE]
Free Article
13.

MGED comes of age.

Causton HC, Game L.

Genome Biol. 2003;4(12):351. Epub 2003 Nov 13.

PMID:
14659013
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Changes in gene expression induced by H(2)O(2) in cardiac myocytes.

Kemp TJ, Causton HC, Clerk A.

Biochem Biophys Res Commun. 2003 Jul 25;307(2):416-21.

PMID:
12859973
[PubMed - indexed for MEDLINE]
15.

Systematic analysis of essential yeast TAFs in genome-wide transcription and preinitiation complex assembly.

Shen WC, Bhaumik SR, Causton HC, Simon I, Zhu X, Jennings EG, Wang TH, Young RA, Green MR.

EMBO J. 2003 Jul 1;22(13):3395-402.

PMID:
12840001
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Microarray databases: standards and ontologies.

Stoeckert CJ Jr, Causton HC, Ball CA.

Nat Genet. 2002 Dec;32 Suppl:469-73. Review.

PMID:
12454640
[PubMed - indexed for MEDLINE]
17.

The underlying principles of scientific publication.

Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, Ringwald M, Spellman P, Stoeckert CJ Jr, Stewart JE, Taylor R, Brazma A, Quackenbush J; Microarray Gene Expression Data.

Bioinformatics. 2002 Nov;18(11):1409. Review. No abstract available.

PMID:
12424109
[PubMed - indexed for MEDLINE]
Free Article
18.

Standards for microarray data.

Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, Causton HC, Cavalieri D, Gaasterland T, Hingamp P, Holstege F, Ringwald M, Spellman P, Stoeckert CJ Jr, Stewart JE, Taylor R, Brazma A, Quackenbush J; Microarray Gene Expression Data (MGED) Society.

Science. 2002 Oct 18;298(5593):539. No abstract available.

PMID:
12387284
[PubMed - indexed for MEDLINE]
19.

Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.

Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FC, Kim IF, Markowitz V, Matese JC, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S, Stewart J, Taylor R, Vilo J, Vingron M.

Nat Genet. 2001 Dec;29(4):365-71.

PMID:
11726920
[PubMed - indexed for MEDLINE]
20.

Remodeling of yeast genome expression in response to environmental changes.

Causton HC, Ren B, Koh SS, Harbison CT, Kanin E, Jennings EG, Lee TI, True HL, Lander ES, Young RA.

Mol Biol Cell. 2001 Feb;12(2):323-37.

PMID:
11179418
[PubMed - indexed for MEDLINE]
Free PMC Article

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