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Results: 1 to 20 of 41

1.

Incipient speciation with biased gene flow between two lineages of the Western Diamondback Rattlesnake (Crotalus atrox).

Schield DR, Card DC, Adams RH, Jezkova T, Reyes-Velasco J, Proctor FN, Spencer CL, Herrmann HW, Mackessy SP, Castoe TA.

Mol Phylogenet Evol. 2014 Dec 19;83C:213-223. doi: 10.1016/j.ympev.2014.12.006. [Epub ahead of print]

PMID:
25534232
[PubMed - as supplied by publisher]
2.

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.

Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, Hickey G, Vandewege MW, St John JA, Capella-Gutiérrez S, Castoe TA, Kern C, Fujita MK, Opazo JC, Jurka J, Kojima KK, Caballero J, Hubley RM, Smit AF, Platt RN, Lavoie CA, Ramakodi MP, Finger JW Jr, Suh A, Isberg SR, Miles L, Chong AY, Jaratlerdsiri W, Gongora J, Moran C, Iriarte A, McCormack J, Burgess SC, Edwards SV, Lyons E, Williams C, Breen M, Howard JT, Gresham CR, Peterson DG, Schmitz J, Pollock DD, Haussler D, Triplett EW, Zhang G, Irie N, Jarvis ED, Brochu CA, Schmidt CJ, McCarthy FM, Faircloth BC, Hoffmann FG, Glenn TC, Gabaldón T, Paten B, Ray DA.

Science. 2014 Dec 12;346(6215):1254449. doi: 10.1126/science.1254449. Epub 2014 Dec 11.

PMID:
25504731
[PubMed - indexed for MEDLINE]
3.

Genetic consequences of postglacial range expansion in two codistributed rodents (genus Dipodomys) depend on ecology and genetic locus.

Jezkova T, Riddle BR, Card DC, Schield DR, Eckstut ME, Castoe TA.

Mol Ecol. 2015 Jan;24(1):83-97. doi: 10.1111/mec.13012. Epub 2014 Dec 13.

PMID:
25413968
[PubMed - in process]
4.

Expression of venom gene homologs in diverse python tissues suggests a new model for the evolution of snake venom.

Reyes-Velasco J, Card DC, Andrew AL, Shaney KJ, Adams RH, Schield DR, Casewell NR, Mackessy SP, Castoe TA.

Mol Biol Evol. 2015 Jan;32(1):173-83. doi: 10.1093/molbev/msu294. Epub 2014 Oct 21.

PMID:
25338510
[PubMed - in process]
5.

Two low coverage bird genomes and a comparison of reference-guided versus de novo genome assemblies.

Card DC, Schield DR, Reyes-Velasco J, Fujita MK, Andrew AL, Oyler-McCance SJ, Fike JA, Tomback DF, Ruggiero RP, Castoe TA.

PLoS One. 2014 Sep 5;9(9):e106649. doi: 10.1371/journal.pone.0106649. eCollection 2014.

PMID:
25192061
[PubMed - in process]
Free PMC Article
6.

Endogenous hepadnaviruses, bornaviruses and circoviruses in snakes.

Gilbert C, Meik JM, Dashevsky D, Card DC, Castoe TA, Schaack S.

Proc Biol Sci. 2014 Sep 22;281(1791):20141122. doi: 10.1098/rspb.2014.1122.

PMID:
25080342
[PubMed - in process]
7.

The Burmese python genome reveals the molecular basis for extreme adaptation in snakes.

Castoe TA, de Koning AP, Hall KT, Card DC, Schield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, Polanco D, Dobry J, Vandewege MW, Li Q, Schott RK, Kapusta A, Minx P, Feschotte C, Uetz P, Ray DA, Hoffmann FG, Bogden R, Smith EN, Chang BS, Vonk FJ, Casewell NR, Henkel CV, Richardson MK, Mackessy SP, Bronikowski AM, Yandell M, Warren WC, Secor SM, Pollock DD.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20645-50. doi: 10.1073/pnas.1314475110. Epub 2013 Dec 2. Erratum in: Proc Natl Acad Sci U S A. 2014 Feb 25;111(8):3194. Proc Natl Acad Sci U S A. 2013 Dec 17;110(51). doi:10.1073/pnas.1324133111. Bronikowsi, Anne M [corrected to Bronikowski, Anne M].

PMID:
24297902
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system.

Vonk FJ, Casewell NR, Henkel CV, Heimberg AM, Jansen HJ, McCleary RJ, Kerkkamp HM, Vos RA, Guerreiro I, Calvete JJ, Wüster W, Woods AE, Logan JM, Harrison RA, Castoe TA, de Koning AP, Pollock DD, Yandell M, Calderon D, Renjifo C, Currier RB, Salgado D, Pla D, Sanz L, Hyder AS, Ribeiro JM, Arntzen JW, van den Thillart GE, Boetzer M, Pirovano W, Dirks RP, Spaink HP, Duboule D, McGlinn E, Kini RM, Richardson MK.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20651-6. doi: 10.1073/pnas.1314702110. Epub 2013 Dec 2.

PMID:
24297900
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Chinese alligator genome illustrates molecular adaptations.

Castoe TA, Pollock DD.

Cell Res. 2013 Nov;23(11):1254-5. doi: 10.1038/cr.2013.134. Epub 2013 Sep 24.

PMID:
24060849
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Phylogenetic relationships of the enigmatic longtailed rattlesnakes (Crotalus ericsmithi, C. lannomi, and C. stejnegeri).

Reyes-Velasco J, Meik JM, Smith EN, Castoe TA.

Mol Phylogenet Evol. 2013 Dec;69(3):524-34. doi: 10.1016/j.ympev.2013.07.025. Epub 2013 Aug 2.

PMID:
23916566
[PubMed - indexed for MEDLINE]
11.

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, Bruneau BG, Buck LT, Capel B, Castoe TA, Czerwinski M, Delehaunty KD, Edwards SV, Fronick CC, Fujita MK, Fulton L, Graves TA, Green RE, Haerty W, Hariharan R, Hernandez O, Hillier LW, Holloway AK, Janes D, Janzen FJ, Kandoth C, Kong L, de Koning AP, Li Y, Literman R, McGaugh SE, Mork L, O'Laughlin M, Paitz RT, Pollock DD, Ponting CP, Radhakrishnan S, Raney BJ, Richman JM, St John J, Schwartz T, Sethuraman A, Spinks PQ, Storey KB, Thane N, Vinar T, Zimmerman LM, Warren WC, Mardis ER, Wilson RK.

Genome Biol. 2013 Mar 28;14(3):R28. doi: 10.1186/gb-2013-14-3-r28.

PMID:
23537068
[PubMed - in process]
Free PMC Article
12.

Report from the first snake genomics and integrative biology meeting.

Castoe TA, Braun EL, Bronikowski AM, Cox CL, Rabosky AR, Jason de Koning AP, Dobry J, Fujita MK, Giorgianni MW, Hargreaves A, Henkel CV, Mackessy SP, O'Meally D, Rokyta DR, Secor SM, Streicher JW, Wray KP, Yokoyama KD, Pollock DD.

Stand Genomic Sci. 2012 Oct 10;7(1):150-2. doi: 10.4056/sigs.3106480. Epub 2012 Sep 24.

PMID:
23451292
[PubMed]
Free PMC Article
13.

Comparative phylogeographic analyses illustrate the complex evolutionary history of threatened cloud forests of northern Mesoamerica.

Ornelas JF, Sosa V, Soltis DE, Daza JM, González C, Soltis PS, Gutiérrez-Rodríguez C, de los Monteros AE, Castoe TA, Bell C, Ruiz-Sanchez E.

PLoS One. 2013;8(2):e56283. doi: 10.1371/journal.pone.0056283. Epub 2013 Feb 7.

PMID:
23409165
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Phylogenetics, likelihood, evolution and complexity.

de Koning AP, Gu W, Castoe TA, Pollock DD.

Bioinformatics. 2012 Nov 15;28(22):2989-90. doi: 10.1093/bioinformatics/bts555. Epub 2012 Sep 12.

PMID:
22976081
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Phylogenetic relationships among Staphylococcus species and refinement of cluster groups based on multilocus data.

Lamers RP, Muthukrishnan G, Castoe TA, Tafur S, Cole AM, Parkinson CL.

BMC Evol Biol. 2012 Sep 6;12:171. doi: 10.1186/1471-2148-12-171.

PMID:
22950675
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Thousands of microsatellite loci from the venomous coralsnake Micrurus fulvius and variability of select loci across populations and related species.

Castoe TA, Streicher JW, Meik JM, Ingrasci MJ, Poole AW, de Koning AP, Campbell JA, Parkinson CL, Smith EN, Pollock DD.

Mol Ecol Resour. 2012 Nov;12(6):1105-13. doi: 10.1111/1755-0998.12000. Epub 2012 Sep 1.

PMID:
22938699
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Transcriptome sequencing of black grouse (Tetrao tetrix) for immune gene discovery and microsatellite development.

Wang B, Ekblom R, Castoe TA, Jones EP, Kozma R, Bongcam-Rudloff E, Pollock DD, Höglund J.

Open Biol. 2012 Apr;2(4):120054. doi: 10.1098/rsob.120054.

PMID:
22724064
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Rapid microsatellite identification from Illumina paired-end genomic sequencing in two birds and a snake.

Castoe TA, Poole AW, de Koning AP, Jones KL, Tomback DF, Oyler-McCance SJ, Fike JA, Lance SL, Streicher JW, Smith EN, Pollock DD.

PLoS One. 2012;7(2):e30953. doi: 10.1371/journal.pone.0030953. Epub 2012 Feb 14.

PMID:
22348032
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes.

St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, Drew JC, Edwards SV, Faircloth BC, Fujita MK, Greenwold MJ, Hoffmann FG, Howard JM, Iguchi T, Janes DE, Khan SY, Kohno S, de Koning AJ, Lance SL, McCarthy FM, McCormack JE, Merchant ME, Peterson DG, Pollock DD, Pourmand N, Raney BJ, Roessler KA, Sanford JR, Sawyer RH, Schmidt CJ, Triplett EW, Tuberville TD, Venegas-Anaya M, Howard JT, Jarvis ED, Guillette LJ Jr, Glenn TC, Green RE, Ray DA.

Genome Biol. 2012 Jan 31;13(1):415. doi: 10.1186/gb-2012-13-1-415.

PMID:
22293439
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders.

Sun C, Shepard DB, Chong RA, López Arriaza J, Hall K, Castoe TA, Feschotte C, Pollock DD, Mueller RL.

Genome Biol Evol. 2012;4(2):168-83. doi: 10.1093/gbe/evr139. Epub 2011 Dec 26.

PMID:
22200636
[PubMed - indexed for MEDLINE]
Free PMC Article
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