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Results: 1 to 20 of 182

1.

TPpred2: improving the prediction of mitochondrial targeting peptide cleavage sites by exploiting sequence motifs.

Savojardo C, Martelli PL, Fariselli P, Casadio R.

Bioinformatics. 2014 Jun 27. pii: btu411. [Epub ahead of print]

PMID:
24974200
[PubMed - as supplied by publisher]
2.

Characteristics of the somatic hypermutation in the Camelus dromedarius T cell receptor gamma (TRG) and delta (TRD) variable domains.

Ciccarese S, Vaccarelli G, Lefranc MP, Tasco G, Consiglio A, Casadio R, Linguiti G, Antonacci R.

Dev Comp Immunol. 2014 Oct;46(2):300-13. doi: 10.1016/j.dci.2014.05.001. Epub 2014 May 13.

PMID:
24836674
[PubMed - in process]
3.

Searching for signatures of cold adaptations in modern and archaic humans: hints from the brown adipose tissue genes.

Sazzini M, Schiavo G, De Fanti S, Martelli PL, Casadio R, Luiselli D.

Heredity (Edinb). 2014 Mar 26. doi: 10.1038/hdy.2014.24. [Epub ahead of print]

PMID:
24667833
[PubMed - as supplied by publisher]
4.

High-throughput SNP discovery in the rabbit (Oryctolagus cuniculus) genome by next-generation semiconductor-based sequencing.

Bertolini F, Schiavo G, Scotti E, Ribani A, Martelli PL, Casadio R, Fontanesi L.

Anim Genet. 2014 Apr;45(2):304-7. doi: 10.1111/age.12121. Epub 2014 Jan 21.

PMID:
24444082
[PubMed - in process]
5.

Frataxin mRNA isoforms in FRDA patients and normal subjects: effect of tocotrienol supplementation.

Abruzzo PM, Marini M, Bolotta A, Malisardi G, Manfredini S, Ghezzo A, Pini A, Tasco G, Casadio R.

Biomed Res Int. 2013;2013:276808. doi: 10.1155/2013/276808. Epub 2013 Sep 23.

PMID:
24175286
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

SUS-BAR: a database of pig proteins with statistically validated structural and functional annotation.

Piovesan D, Profiti G, Martelli PL, Fariselli P, Fontanesi L, Casadio R.

Database (Oxford). 2013 Sep 23;2013:bat065. doi: 10.1093/database/bat065. Print 2013.

PMID:
24065691
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

BCov: a method for predicting β-sheet topology using sparse inverse covariance estimation and integer programming.

Savojardo C, Fariselli P, Martelli PL, Casadio R.

Bioinformatics. 2013 Dec 15;29(24):3151-7. doi: 10.1093/bioinformatics/btt555. Epub 2013 Sep 23.

PMID:
24064422
[PubMed - indexed for MEDLINE]
8.

Mapping and annotating obesity-related genes in pig and human genomes.

Martelli PL, Fontanesi L, Piovesan D, Fariselli P, Casadio R.

Protein Pept Lett. 2014;21(8):840-6.

PMID:
23855670
[PubMed - in process]
9.

WS-SNPs&GO: a web server for predicting the deleterious effect of human protein variants using functional annotation.

Capriotti E, Calabrese R, Fariselli P, Martelli PL, Altman RB, Casadio R.

BMC Genomics. 2013;14 Suppl 3:S6. doi: 10.1186/1471-2164-14-S3-S6. Epub 2013 May 28.

PMID:
23819482
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

MIMO: an efficient tool for molecular interaction maps overlap.

Di Lena P, Wu G, Martelli PL, Casadio R, Nardini C.

BMC Bioinformatics. 2013 May 15;14:159. doi: 10.1186/1471-2105-14-159.

PMID:
23672344
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Analysis of all subunits, SDHA, SDHB, SDHC, SDHD, of the succinate dehydrogenase complex in KIT/PDGFRA wild-type GIST.

Pantaleo MA, Astolfi A, Urbini M, Nannini M, Paterini P, Indio V, Saponara M, Formica S, Ceccarelli C, Casadio R, Rossi G, Bertolini F, Santini D, Pirini MG, Fiorentino M, Basso U, Biasco G; GIST Study Group.

Eur J Hum Genet. 2014 Jan;22(1):32-9. doi: 10.1038/ejhg.2013.80. Epub 2013 Apr 24.

PMID:
23612575
[PubMed - in process]
12.

How to inherit statistically validated annotation within BAR+ protein clusters.

Piovesan D, Martelli PL, Fariselli P, Profiti G, Zauli A, Rossi I, Casadio R.

BMC Bioinformatics. 2013;14 Suppl 3:S4. doi: 10.1186/1471-2105-14-S3-S4. Epub 2013 Feb 28.

PMID:
23514411
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The prediction of organelle-targeting peptides in eukaryotic proteins with Grammatical-Restrained Hidden Conditional Random Fields.

Indio V, Martelli PL, Savojardo C, Fariselli P, Casadio R.

Bioinformatics. 2013 Apr 15;29(8):981-8. doi: 10.1093/bioinformatics/btt089. Epub 2013 Feb 21.

PMID:
23428638
[PubMed - indexed for MEDLINE]
Free Article
14.

CBFA2T3-GLIS2 fusion transcript is a novel common feature in pediatric, cytogenetically normal AML, not restricted to FAB M7 subtype.

Masetti R, Pigazzi M, Togni M, Astolfi A, Indio V, Manara E, Casadio R, Pession A, Basso G, Locatelli F.

Blood. 2013 Apr 25;121(17):3469-72. doi: 10.1182/blood-2012-11-469825. Epub 2013 Feb 13.

PMID:
23407549
[PubMed - indexed for MEDLINE]
Free Article
15.

Prediction of disulfide connectivity in proteins with machine-learning methods and correlated mutations.

Savojardo C, Fariselli P, Martelli PL, Casadio R.

BMC Bioinformatics. 2013;14 Suppl 1:S10. doi: 10.1186/1471-2105-14-S1-S10. Epub 2013 Jan 14.

PMID:
23368835
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A large-scale evaluation of computational protein function prediction.

Radivojac P, Clark WT, Oron TR, Schnoes AM, Wittkop T, Sokolov A, Graim K, Funk C, Verspoor K, Ben-Hur A, Pandey G, Yunes JM, Talwalkar AS, Repo S, Souza ML, Piovesan D, Casadio R, Wang Z, Cheng J, Fang H, Gough J, Koskinen P, Törönen P, Nokso-Koivisto J, Holm L, Cozzetto D, Buchan DW, Bryson K, Jones DT, Limaye B, Inamdar H, Datta A, Manjari SK, Joshi R, Chitale M, Kihara D, Lisewski AM, Erdin S, Venner E, Lichtarge O, Rentzsch R, Yang H, Romero AE, Bhat P, Paccanaro A, Hamp T, Kaßner R, Seemayer S, Vicedo E, Schaefer C, Achten D, Auer F, Boehm A, Braun T, Hecht M, Heron M, Hönigschmid P, Hopf TA, Kaufmann S, Kiening M, Krompass D, Landerer C, Mahlich Y, Roos M, Björne J, Salakoski T, Wong A, Shatkay H, Gatzmann F, Sommer I, Wass MN, Sternberg MJ, Škunca N, Supek F, Bošnjak M, Panov P, Džeroski S, Šmuc T, Kourmpetis YA, van Dijk AD, ter Braak CJ, Zhou Y, Gong Q, Dong X, Tian W, Falda M, Fontana P, Lavezzo E, Di Camillo B, Toppo S, Lan L, Djuric N, Guo Y, Vucetic S, Bairoch A, Linial M, Babbitt PC, Brenner SE, Orengo C, Rost B, Mooney SD, Friedberg I.

Nat Methods. 2013 Mar;10(3):221-7. doi: 10.1038/nmeth.2340. Epub 2013 Jan 27.

PMID:
23353650
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

BETAWARE: a machine-learning tool to detect and predict transmembrane beta-barrel proteins in prokaryotes.

Savojardo C, Fariselli P, Casadio R.

Bioinformatics. 2013 Feb 15;29(4):504-5. doi: 10.1093/bioinformatics/bts728. Epub 2013 Jan 6.

PMID:
23297037
[PubMed - indexed for MEDLINE]
Free Article
18.

Expression of IGF-1 receptor in KIT/PDGF receptor-α wild-type gastrointestinal stromal tumors with succinate dehydrogenase complex dysfunction.

Nannini M, Astolfi A, Paterini P, Urbini M, Santini D, Catena F, Indio V, Casadio R, Pinna AD, Biasco G, Pantaleo MA.

Future Oncol. 2013 Jan;9(1):121-6. doi: 10.2217/fon.12.170.

PMID:
23252569
[PubMed - indexed for MEDLINE]
19.

Haplotype of single nucleotide polymorphisms in exon 6 of the MZF-1 gene and Alzheimer's disease.

Porcellini E, Carbone I, Martelli PL, Ianni M, Casadio R, Pession A, Licastro F.

J Alzheimers Dis. 2013;34(2):439-47. doi: 10.3233/JAD-121546.

PMID:
23241556
[PubMed - indexed for MEDLINE]
20.

A genome wide association study for backfat thickness in Italian Large White pigs highlights new regions affecting fat deposition including neuronal genes.

Fontanesi L, Schiavo G, Galimberti G, Calò DG, Scotti E, Martelli PL, Buttazzoni L, Casadio R, Russo V.

BMC Genomics. 2012 Nov 15;13:583. doi: 10.1186/1471-2164-13-583.

PMID:
23153328
[PubMed - indexed for MEDLINE]
Free PMC Article

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