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Results: 1 to 20 of 185

1.

Modulating the thermostability of Endoglucanase I from Trichoderma reesei using computational approaches.

Bayram Akcapinar G, Venturini A, Martelli PL, Casadio R, Sezerman UO.

Protein Eng Des Sel. 2015 Mar 16. pii: gzv012. [Epub ahead of print]

PMID:
25784767
2.

Computer-based prediction of mitochondria-targeting peptides.

Martelli PL, Savojardo C, Fariselli P, Tasco G, Casadio R.

Methods Mol Biol. 2015;1264:305-20. doi: 10.1007/978-1-4939-2257-4_27.

PMID:
25631024
3.

A high-density, SNP-based consensus map of tetraploid wheat as a bridge to integrate durum and bread wheat genomics and breeding.

Maccaferri M, Ricci A, Salvi S, Milner SG, Noli E, Martelli PL, Casadio R, Akhunov E, Scalabrin S, Vendramin V, Ammar K, Blanco A, Desiderio F, Distelfeld A, Dubcovsky J, Fahima T, Faris J, Korol A, Massi A, Mastrangelo AM, Morgante M, Pozniak C, N'Diaye A, Xu S, Tuberosa R.

Plant Biotechnol J. 2014 Nov 26. doi: 10.1111/pbi.12288. [Epub ahead of print]

PMID:
25424506
4.

TPpred2: improving the prediction of mitochondrial targeting peptide cleavage sites by exploiting sequence motifs.

Savojardo C, Martelli PL, Fariselli P, Casadio R.

Bioinformatics. 2014 Oct 15;30(20):2973-4. doi: 10.1093/bioinformatics/btu411. Epub 2014 Jun 27.

PMID:
24974200
5.

Characteristics of the somatic hypermutation in the Camelus dromedarius T cell receptor gamma (TRG) and delta (TRD) variable domains.

Ciccarese S, Vaccarelli G, Lefranc MP, Tasco G, Consiglio A, Casadio R, Linguiti G, Antonacci R.

Dev Comp Immunol. 2014 Oct;46(2):300-13. doi: 10.1016/j.dci.2014.05.001. Epub 2014 May 13.

PMID:
24836674
6.

Searching for signatures of cold adaptations in modern and archaic humans: hints from the brown adipose tissue genes.

Sazzini M, Schiavo G, De Fanti S, Martelli PL, Casadio R, Luiselli D.

Heredity (Edinb). 2014 Sep;113(3):259-67. doi: 10.1038/hdy.2014.24. Epub 2014 Mar 26.

PMID:
24667833
7.

High-throughput SNP discovery in the rabbit (Oryctolagus cuniculus) genome by next-generation semiconductor-based sequencing.

Bertolini F, Schiavo G, Scotti E, Ribani A, Martelli PL, Casadio R, Fontanesi L.

Anim Genet. 2014 Apr;45(2):304-7. doi: 10.1111/age.12121. Epub 2014 Jan 21.

PMID:
24444082
8.

Frataxin mRNA isoforms in FRDA patients and normal subjects: effect of tocotrienol supplementation.

Abruzzo PM, Marini M, Bolotta A, Malisardi G, Manfredini S, Ghezzo A, Pini A, Tasco G, Casadio R.

Biomed Res Int. 2013;2013:276808. doi: 10.1155/2013/276808. Epub 2013 Sep 23.

9.

SUS-BAR: a database of pig proteins with statistically validated structural and functional annotation.

Piovesan D, Profiti G, Martelli PL, Fariselli P, Fontanesi L, Casadio R.

Database (Oxford). 2013 Sep 23;2013:bat065. doi: 10.1093/database/bat065. Print 2013.

10.

BCov: a method for predicting β-sheet topology using sparse inverse covariance estimation and integer programming.

Savojardo C, Fariselli P, Martelli PL, Casadio R.

Bioinformatics. 2013 Dec 15;29(24):3151-7. doi: 10.1093/bioinformatics/btt555. Epub 2013 Sep 23.

11.

Mapping and annotating obesity-related genes in pig and human genomes.

Martelli PL, Fontanesi L, Piovesan D, Fariselli P, Casadio R.

Protein Pept Lett. 2014;21(8):840-6.

PMID:
23855670
12.

WS-SNPs&GO: a web server for predicting the deleterious effect of human protein variants using functional annotation.

Capriotti E, Calabrese R, Fariselli P, Martelli PL, Altman RB, Casadio R.

BMC Genomics. 2013;14 Suppl 3:S6. doi: 10.1186/1471-2164-14-S3-S6. Epub 2013 May 28.

13.

MIMO: an efficient tool for molecular interaction maps overlap.

Di Lena P, Wu G, Martelli PL, Casadio R, Nardini C.

BMC Bioinformatics. 2013 May 15;14:159. doi: 10.1186/1471-2105-14-159.

14.

Analysis of all subunits, SDHA, SDHB, SDHC, SDHD, of the succinate dehydrogenase complex in KIT/PDGFRA wild-type GIST.

Pantaleo MA, Astolfi A, Urbini M, Nannini M, Paterini P, Indio V, Saponara M, Formica S, Ceccarelli C, Casadio R, Rossi G, Bertolini F, Santini D, Pirini MG, Fiorentino M, Basso U, Biasco G; GIST Study Group.

Eur J Hum Genet. 2014 Jan;22(1):32-9. doi: 10.1038/ejhg.2013.80. Epub 2013 Apr 24.

15.

How to inherit statistically validated annotation within BAR+ protein clusters.

Piovesan D, Martelli PL, Fariselli P, Profiti G, Zauli A, Rossi I, Casadio R.

BMC Bioinformatics. 2013;14 Suppl 3:S4. doi: 10.1186/1471-2105-14-S3-S4. Epub 2013 Feb 28.

16.

The prediction of organelle-targeting peptides in eukaryotic proteins with Grammatical-Restrained Hidden Conditional Random Fields.

Indio V, Martelli PL, Savojardo C, Fariselli P, Casadio R.

Bioinformatics. 2013 Apr 15;29(8):981-8. doi: 10.1093/bioinformatics/btt089. Epub 2013 Feb 21.

17.

CBFA2T3-GLIS2 fusion transcript is a novel common feature in pediatric, cytogenetically normal AML, not restricted to FAB M7 subtype.

Masetti R, Pigazzi M, Togni M, Astolfi A, Indio V, Manara E, Casadio R, Pession A, Basso G, Locatelli F.

Blood. 2013 Apr 25;121(17):3469-72. doi: 10.1182/blood-2012-11-469825. Epub 2013 Feb 13.

18.

Prediction of disulfide connectivity in proteins with machine-learning methods and correlated mutations.

Savojardo C, Fariselli P, Martelli PL, Casadio R.

BMC Bioinformatics. 2013;14 Suppl 1:S10. doi: 10.1186/1471-2105-14-S1-S10. Epub 2013 Jan 14.

19.

A large-scale evaluation of computational protein function prediction.

Radivojac P, Clark WT, Oron TR, Schnoes AM, Wittkop T, Sokolov A, Graim K, Funk C, Verspoor K, Ben-Hur A, Pandey G, Yunes JM, Talwalkar AS, Repo S, Souza ML, Piovesan D, Casadio R, Wang Z, Cheng J, Fang H, Gough J, Koskinen P, Törönen P, Nokso-Koivisto J, Holm L, Cozzetto D, Buchan DW, Bryson K, Jones DT, Limaye B, Inamdar H, Datta A, Manjari SK, Joshi R, Chitale M, Kihara D, Lisewski AM, Erdin S, Venner E, Lichtarge O, Rentzsch R, Yang H, Romero AE, Bhat P, Paccanaro A, Hamp T, Kaßner R, Seemayer S, Vicedo E, Schaefer C, Achten D, Auer F, Boehm A, Braun T, Hecht M, Heron M, Hönigschmid P, Hopf TA, Kaufmann S, Kiening M, Krompass D, Landerer C, Mahlich Y, Roos M, Björne J, Salakoski T, Wong A, Shatkay H, Gatzmann F, Sommer I, Wass MN, Sternberg MJ, Škunca N, Supek F, Bošnjak M, Panov P, Džeroski S, Šmuc T, Kourmpetis YA, van Dijk AD, ter Braak CJ, Zhou Y, Gong Q, Dong X, Tian W, Falda M, Fontana P, Lavezzo E, Di Camillo B, Toppo S, Lan L, Djuric N, Guo Y, Vucetic S, Bairoch A, Linial M, Babbitt PC, Brenner SE, Orengo C, Rost B, Mooney SD, Friedberg I.

Nat Methods. 2013 Mar;10(3):221-7. doi: 10.1038/nmeth.2340. Epub 2013 Jan 27.

20.

BETAWARE: a machine-learning tool to detect and predict transmembrane beta-barrel proteins in prokaryotes.

Savojardo C, Fariselli P, Casadio R.

Bioinformatics. 2013 Feb 15;29(4):504-5. doi: 10.1093/bioinformatics/bts728. Epub 2013 Jan 6.

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